| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1040 |
|---|
| Symbol | |
|---|
| ID | 6183685 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 903383 |
|---|
| End bp | 904099 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 641671652 |
|---|
| Product | cyclic nucleotide-binding protein |
|---|
| Protein accession | YP_001797829 |
|---|
| Protein GI | 171463716 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 63 |
|---|
| Fosmid unclonability p-value | 0.464794 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACTA TCGAAATTAA GAATGCATGG CGTGATAATA GCGATTGCAA TGCATGCTCT
ATTCGTAGTT CTGCATTATT TGCAGAATTG AATGAAGAAG ATTTTTCCAA GATTCATTCG
CCCATTGATG ATATGAGATT TGAGGCTAAT GCCAGTCTTT ATACCCAAGG CGATGTAGCG
GAATACCTGT ATACCCTACG CGAAGGGTAC ATCAAGTTGT TACATATCAA TTCTGACGGC
TCAAATAGAA TAGTGCGCTT AGTGATGCCG GGTGATTTAT TTGGTATGGA GGCATTACTT
GGTCAAACCT ACTCCCATTC GGCTGCTGCC TTGTCTAATG TGCATCTCTG TCGGATTCCT
AAGGCCATTA TTTCTAGCTT GGGGGAAGAA TCGCCACGCT TGCATAGGCA GATAGTCAAA
AAGTGGGGTG AGGCTTTAGC TCAATCAGAG TCTTGGTTTT CTGAGATCAA TACTGGGAGA
ATTAAAATAC GCTTGGCTAG ATTCTTCCTG CGTGTTGCTA GGGTTTCTGG CGATATGGCA
GTTGCACCGC TTTTTAAGAG GGAGGATATG GGCTTAATGA TGGATGTGAA GTTTGAAACT
ATCAGTAGAG CGCTTTCATC AATGTCTGAG CAGGGATTAA TTTCGAATAT CAGCAGATTG
AGTATTCAAA TACCGAGCGT GAATGGTTTG AGGAAGTTTT CACAGTCTGG CTCTTAA
|
|---|
| Protein sequence | MKTIEIKNAW RDNSDCNACS IRSSALFAEL NEEDFSKIHS PIDDMRFEAN ASLYTQGDVA
EYLYTLREGY IKLLHINSDG SNRIVRLVMP GDLFGMEALL GQTYSHSAAA LSNVHLCRIP
KAIISSLGEE SPRLHRQIVK KWGEALAQSE SWFSEINTGR IKIRLARFFL RVARVSGDMA
VAPLFKREDM GLMMDVKFET ISRALSSMSE QGLISNISRL SIQIPSVNGL RKFSQSGS
|
|---|
| |