More than 300 homologs were found in PanDaTox collection
for query gene Noca_1660 on replicon NC_008699
Organism: Nocardioides sp. JS614



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008699  Noca_1660  Crp/FNR family transcriptional regulator  100 
 
 
261 aa  514  1.0000000000000001e-145  Nocardioides sp. JS614  Bacteria  normal  0.74426  n/a   
 
 
-
 
NC_014151  Cfla_0719  transcriptional regulator, Crp/Fnr family  52.02 
 
 
257 aa  242  5e-63  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000204419 
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  46.91 
 
 
249 aa  219  3.9999999999999997e-56  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_013172  Bfae_24470  cAMP-binding protein  42.23 
 
 
261 aa  189  4e-47  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  37.27 
 
 
231 aa  141  9e-33  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_009485  BBta_6822  Crp/FNR family transcriptional regulator  38.65 
 
 
239 aa  137  1e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  39.27 
 
 
236 aa  136  3.0000000000000003e-31  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1465  Crp/FNR family transcriptional regulator  40.27 
 
 
236 aa  136  3.0000000000000003e-31  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.342125  normal  0.439299 
 
 
-
 
NC_011666  Msil_1523  transcriptional regulator, Crp/Fnr family  36.36 
 
 
231 aa  135  5e-31  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  38.16 
 
 
240 aa  135  9.999999999999999e-31  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_009668  Oant_3114  CRP/FNR family transcriptional regulator  35.21 
 
 
232 aa  133  3e-30  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  35.21 
 
 
231 aa  132  7.999999999999999e-30  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  35.21 
 
 
231 aa  132  7.999999999999999e-30  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_011126  HY04AAS1_0644  transcriptional regulator, Crp/Fnr family  31.72 
 
 
243 aa  129  4.0000000000000003e-29  Hydrogenobaculum sp. Y04AAS1  Bacteria  unclonable  0.0000000000000386152  n/a   
 
 
-
 
NC_007778  RPB_3150  Crp/FNR family transcriptional regulator  35.11 
 
 
252 aa  129  5.0000000000000004e-29  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  35.91 
 
 
236 aa  129  5.0000000000000004e-29  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_009668  Oant_4381  CRP/FNR family transcriptional regulator  36.68 
 
 
231 aa  129  6e-29  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_1010  CRP/FNR family transcriptional regulator  34.62 
 
 
257 aa  129  6e-29  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0281  transcriptional regulator NnrR  33.83 
 
 
232 aa  127  2.0000000000000002e-28  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0257  transcriptional regulator NnrR  33.83 
 
 
232 aa  127  2.0000000000000002e-28  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3066  cyclic nucleotide-binding  35.68 
 
 
240 aa  126  3e-28  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2246  Crp/FNR family transcriptional regulator  34.78 
 
 
233 aa  125  6e-28  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_0327  Crp/FNR family transcriptional regulator  34.48 
 
 
233 aa  125  9e-28  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.539351  n/a   
 
 
-
 
NC_009049  Rsph17029_1972  CRP/FNR family transcriptional regulator  34.48 
 
 
233 aa  125  9e-28  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_011887  Mnod_8112  transcriptional regulator, Crp/Fnr family  37.38 
 
 
229 aa  123  4e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  29.22 
 
 
239 aa  122  7e-27  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_008242  Meso_4277  Crp/FNR family transcriptional regulator  34.67 
 
 
234 aa  122  8e-27  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  30.7 
 
 
227 aa  120  3e-26  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  27.69 
 
 
236 aa  119  3e-26  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_013526  Tter_2020  transcriptional regulator, Crp/Fnr family  34.32 
 
 
239 aa  118  9.999999999999999e-26  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.0424227  n/a   
 
 
-
 
NC_007964  Nham_2812  Crp/FNR family transcriptional regulator  33.65 
 
 
243 aa  118  9.999999999999999e-26  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0968  CRP/FNR family transcriptional regulator  32.89 
 
 
233 aa  118  9.999999999999999e-26  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  31.46 
 
 
225 aa  116  3e-25  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_007406  Nwi_2417  cyclic nucleotide-binding protein  35.07 
 
 
250 aa  116  3.9999999999999997e-25  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.034588  normal  0.0382931 
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  26.53 
 
 
236 aa  116  3.9999999999999997e-25  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_011004  Rpal_0837  transcriptional regulator, Crp/Fnr family  33.18 
 
 
234 aa  115  1.0000000000000001e-24  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2941  Crp/FNR family transcriptional regulator  32.58 
 
 
235 aa  114  2.0000000000000002e-24  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  27.49 
 
 
232 aa  110  2.0000000000000002e-23  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_008340  Mlg_1070  Crp/FNR family transcriptional regulator  35.41 
 
 
235 aa  108  7.000000000000001e-23  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.105875  normal 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  28.92 
 
 
226 aa  108  7.000000000000001e-23  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1678  transcriptional regulator, Crp/Fnr family  30.35 
 
 
234 aa  108  1e-22  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  31.36 
 
 
226 aa  107  2e-22  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  26.51 
 
 
236 aa  107  2e-22  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  27.85 
 
 
226 aa  106  3e-22  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  26.51 
 
 
236 aa  106  4e-22  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  27.75 
 
 
219 aa  106  5e-22  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0394  transcriptional regulator, Crp/Fnr family  30.73 
 
 
237 aa  105  1e-21  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_009507  Swit_5204  CRP/FNR family transcriptional regulator  31.53 
 
 
261 aa  103  3e-21  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.26828 
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  30 
 
 
225 aa  102  9e-21  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  26.05 
 
 
225 aa  101  1e-20  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  30.3 
 
 
352 aa  101  1e-20  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  31.68 
 
 
225 aa  101  1e-20  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1619  cyclic nucleotide-binding  34.35 
 
 
235 aa  100  2e-20  Nocardioides sp. JS614  Bacteria  normal  0.146026  n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  31.92 
 
 
231 aa  100  3e-20  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  31.84 
 
 
225 aa  99.8  4e-20  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1641  cyclic nucleotide-binding  29.52 
 
 
267 aa  99.8  4e-20  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_0106  Crp/FNR family transcriptional regulator  32.84 
 
 
254 aa  99.8  5e-20  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  28.83 
 
 
227 aa  99.4  6e-20  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_013721  HMPREF0424_0303  cyclic nucleotide-binding domain protein  29.56 
 
 
236 aa  99  7e-20  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.232206 
 
 
-
 
NC_011831  Cagg_1798  transcriptional regulator, Crp/Fnr family  32.68 
 
 
224 aa  98.2  1e-19  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.112724  normal  0.701218 
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  30.56 
 
 
234 aa  97.8  1e-19  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_013595  Sros_8981  putative transcriptional regulator, Crp/Fnr family  33.65 
 
 
222 aa  97.8  1e-19  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  31.65 
 
 
226 aa  97.4  2e-19  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0981  transcriptional regulator, Crp/Fnr family  31.36 
 
 
246 aa  97.1  2e-19  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0154476 
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  25.45 
 
 
243 aa  97.8  2e-19  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_013037  Dfer_5316  transcriptional regulator, Crp/Fnr family  29.7 
 
 
354 aa  97.8  2e-19  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.100222 
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  29.31 
 
 
236 aa  97.1  3e-19  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  30.77 
 
 
228 aa  97.1  3e-19  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_011761  AFE_0857  transcriptional regulator, Crp/Fnr family  31.36 
 
 
229 aa  96.7  4e-19  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  28.38 
 
 
227 aa  96.7  4e-19  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  30.59 
 
 
248 aa  95.9  6e-19  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  30.41 
 
 
224 aa  95.9  6e-19  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  29.63 
 
 
231 aa  95.1  9e-19  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_008148  Rxyl_1234  Crp/FNR family transcriptional regulator  32.82 
 
 
232 aa  95.1  1e-18  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  26.54 
 
 
225 aa  95.1  1e-18  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  30 
 
 
251 aa  94  2e-18  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  29.03 
 
 
225 aa  94  2e-18  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  27.03 
 
 
241 aa  93.6  3e-18  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  30.99 
 
 
225 aa  93.6  3e-18  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_013730  Slin_3553  transcriptional regulator, Crp/Fnr family  31.67 
 
 
348 aa  93.6  3e-18  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.528491 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  30.14 
 
 
225 aa  93.6  3e-18  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  30 
 
 
229 aa  93.2  4e-18  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  29.82 
 
 
227 aa  92.8  4e-18  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  29.68 
 
 
225 aa  93.2  4e-18  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  28.93 
 
 
228 aa  93.2  4e-18  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  29.59 
 
 
228 aa  92.4  6e-18  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  28.44 
 
 
229 aa  92.4  6e-18  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  29.81 
 
 
220 aa  92.4  7e-18  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_008262  CPR_1062  Crp/FNR family transcriptional regulator  26.64 
 
 
236 aa  92  8e-18  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  27.91 
 
 
227 aa  92  9e-18  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_008025  Dgeo_1275  Crp/FNR family transcriptional regulator  33.18 
 
 
230 aa  92  9e-18  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.651323 
 
 
-
 
NC_011830  Dhaf_3071  transcriptional regulator, Crp/Fnr family  25.87 
 
 
224 aa  91.7  1e-17  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00222127  n/a   
 
 
-
 
NC_013216  Dtox_2750  transcriptional regulator, Crp/Fnr family  26.48 
 
 
222 aa  91.7  1e-17  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.0000000354449  normal  0.602467 
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  30.2 
 
 
226 aa  91.7  1e-17  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  26.99 
 
 
228 aa  91.7  1e-17  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  25.37 
 
 
231 aa  91.3  2e-17  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  27.85 
 
 
227 aa  90.5  2e-17  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_008609  Ppro_2444  Crp/FNR family transcriptional regulator  26.17 
 
 
238 aa  90.9  2e-17  Pelobacter propionicus DSM 2379  Bacteria  decreased coverage  0.000577484  n/a   
 
 
-
 
NC_012560  Avin_22000  transcriptional regulator, Crp/Fnr family  28.64 
 
 
235 aa  91.3  2e-17  Azotobacter vinelandii DJ  Bacteria  normal  0.457493  n/a   
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  29.33 
 
 
225 aa  91.3  2e-17  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
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