More than 300 homologs were found in PanDaTox collection
for query gene Rpal_0740 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_0740  transcriptional regulator, Crp/Fnr family  100 
 
 
255 aa  508  1e-143  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1012  Crp/FNR family transcriptional regulator  89.63 
 
 
241 aa  434  1e-120  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.88102  normal  0.736744 
 
 
-
 
NC_007958  RPD_1522  cyclic nucleotide-binding  87.97 
 
 
241 aa  431  1e-120  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.500349  normal  0.967279 
 
 
-
 
NC_009952  Dshi_3189  transcriptional regulator  43.75 
 
 
236 aa  175  6e-43  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_2478  CRP/FNR family transcriptional regulator  41.28 
 
 
249 aa  163  3e-39  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.651433 
 
 
-
 
NC_009952  Dshi_3191  transcriptional regulator Dnr  36.61 
 
 
227 aa  145  9e-34  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_3466  regulator of Biofilm formation Fnr Family  32.88 
 
 
235 aa  125  6e-28  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_1658  transcriptional regulator, Crp/Fnr family  29.22 
 
 
222 aa  110  1.0000000000000001e-23  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.365354  n/a   
 
 
-
 
NC_011206  Lferr_1356  transcriptional regulator, Crp/Fnr family  29.22 
 
 
222 aa  110  1.0000000000000001e-23  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011206  Lferr_0981  transcriptional regulator, Crp/Fnr family  30.48 
 
 
246 aa  108  8.000000000000001e-23  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0154476 
 
 
-
 
NC_011761  AFE_0857  transcriptional regulator, Crp/Fnr family  30.48 
 
 
229 aa  108  8.000000000000001e-23  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2376  CRP/FNR family transcriptional regulator  29.63 
 
 
226 aa  107  2e-22  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.253524 
 
 
-
 
NC_007404  Tbd_0079  Crp/FNR family transcriptional regulator  28.89 
 
 
225 aa  105  6e-22  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.849443  normal  0.162256 
 
 
-
 
NC_007908  Rfer_0060  Crp/FNR family transcriptional regulator  35.83 
 
 
234 aa  104  1e-21  Rhodoferax ferrireducens T118  Bacteria  normal  0.237094  n/a   
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  28.25 
 
 
236 aa  103  3e-21  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  31.86 
 
 
229 aa  101  1e-20  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  28.37 
 
 
228 aa  101  1e-20  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  29.95 
 
 
228 aa  99.8  4e-20  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_004311  BRA0301  transcriptional activator FtrB  31.1 
 
 
236 aa  99.4  5e-20  Brucella suis 1330  Bacteria  normal  0.025844  n/a   
 
 
-
 
NC_009504  BOV_A0277  transcriptional activator FtrB  31.1 
 
 
236 aa  99.4  5e-20  Brucella ovis ATCC 25840  Bacteria  normal  0.739319  n/a   
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  31.78 
 
 
227 aa  99.4  5e-20  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A1691  CRP/FNR family transcriptional regulator  28.84 
 
 
232 aa  99  6e-20  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00272653  normal  0.637065 
 
 
-
 
NC_008576  Mmc1_0460  Crp/FNR family transcriptional regulator  32.18 
 
 
232 aa  98.6  9e-20  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.884408 
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  30.32 
 
 
230 aa  97.8  1e-19  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  31.48 
 
 
248 aa  98.2  1e-19  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_009953  Sare_4620  Crp/FNR family transcriptional regulator  35.12 
 
 
237 aa  97.8  2e-19  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.128051 
 
 
-
 
NC_013510  Tcur_0407  transcriptional regulator, Crp/Fnr family  28.7 
 
 
243 aa  97.4  2e-19  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3301  transcriptional regulator, Crp/Fnr family  30.04 
 
 
227 aa  97.4  2e-19  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.306356 
 
 
-
 
NC_009668  Oant_2889  transcriptional activator FtrB  30.77 
 
 
239 aa  97.4  2e-19  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.22661  n/a   
 
 
-
 
NC_007298  Daro_1036  cyclic nucleotide-binding  28.7 
 
 
245 aa  97.1  3e-19  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_3198  Crp/FNR family transcriptional regulator  28.11 
 
 
231 aa  95.5  7e-19  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  29.82 
 
 
241 aa  94.4  2e-18  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  28.96 
 
 
229 aa  94  2e-18  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_009656  PSPA7_0628  transcriptional regulator Dnr  26.51 
 
 
227 aa  94  2e-18  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  29.69 
 
 
231 aa  93.2  3e-18  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_011662  Tmz1t_2606  transcriptional regulator, Crp/Fnr family  28.18 
 
 
253 aa  93.6  3e-18  Thauera sp. MZ1T  Bacteria  normal  0.193309  n/a   
 
 
-
 
NC_009484  Acry_1580  CRP/FNR family transcriptional regulator  36.1 
 
 
240 aa  92.4  6e-18  Acidiphilium cryptum JF-5  Bacteria  normal  0.391426  n/a   
 
 
-
 
NC_010524  Lcho_1454  Crp/FNR family transcriptional regulator  31.55 
 
 
252 aa  92.4  6e-18  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008463  PA14_06870  transcriptional regulator Dnr  26.05 
 
 
227 aa  92  7e-18  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.156456  normal 
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  27.73 
 
 
226 aa  91.3  1e-17  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  29.09 
 
 
227 aa  90.5  2e-17  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_007954  Sden_3444  cyclic nucleotide-binding  27.14 
 
 
250 aa  90.9  2e-17  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  28.51 
 
 
227 aa  90.5  2e-17  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  25.81 
 
 
227 aa  90.9  2e-17  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_008347  Mmar10_2709  transcriptional activator FtrB  27.14 
 
 
232 aa  90.9  2e-17  Maricaulis maris MCS10  Bacteria  normal  normal  0.0829617 
 
 
-
 
NC_011662  Tmz1t_1286  transcriptional regulator, Crp/Fnr family  33.52 
 
 
227 aa  90.5  2e-17  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0906  Crp/FNR family transcriptional regulator  31.92 
 
 
238 aa  90.1  3e-17  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5024  cyclic nucleotide-binding protein  29.58 
 
 
221 aa  89.4  6e-17  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.923745  normal 
 
 
-
 
NC_008782  Ajs_1904  CRP/FNR family transcriptional regulator  32.18 
 
 
254 aa  89  7e-17  Acidovorax sp. JS42  Bacteria  normal  0.0603838  normal  0.510939 
 
 
-
 
NC_011992  Dtpsy_1709  transcriptional regulator, Crp/Fnr family  32.18 
 
 
254 aa  89  7e-17  Acidovorax ebreus TPSY  Bacteria  normal  0.0525745  n/a   
 
 
-
 
NC_009092  Shew_3331  Crp/FNR family transcriptional regulator  27.14 
 
 
258 aa  87.8  2e-16  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  28.14 
 
 
254 aa  87.8  2e-16  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  27.91 
 
 
229 aa  86.7  3e-16  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_2595  Crp/FNR family transcriptional regulator  31.18 
 
 
251 aa  86.7  3e-16  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.396823  normal 
 
 
-
 
NC_011894  Mnod_2132  transcriptional regulator, Crp/Fnr family  27.85 
 
 
293 aa  86.3  4e-16  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.263338  n/a   
 
 
-
 
NC_008687  Pden_4238  transcriptional activator FtrB  27.19 
 
 
234 aa  84.3  0.000000000000002  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.363885 
 
 
-
 
NC_008700  Sama_2685  cAMP-binding protein  26.98 
 
 
272 aa  84.3  0.000000000000002  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  29.03 
 
 
229 aa  84  0.000000000000002  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  26.7 
 
 
227 aa  83.6  0.000000000000003  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_007643  Rru_A2636  Crp/FNR family transcriptional regulator  29.77 
 
 
234 aa  82.8  0.000000000000005  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_5927  cyclic nucleotide-binding protein  28.7 
 
 
226 aa  82  0.000000000000008  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.514964 
 
 
-
 
NC_011662  Tmz1t_4014  transcriptional regulator, Crp/Fnr family  28.57 
 
 
233 aa  82  0.000000000000008  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2635  Crp/FNR family transcriptional regulator  32.8 
 
 
252 aa  82  0.000000000000009  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.545323  n/a   
 
 
-
 
NC_010511  M446_6129  Crp/FNR family transcriptional regulator  29.49 
 
 
267 aa  81.6  0.00000000000001  Methylobacterium sp. 4-46  Bacteria  normal  0.0255629  normal 
 
 
-
 
NC_008576  Mmc1_1531  Crp/FNR family transcriptional regulator  27.32 
 
 
239 aa  80.9  0.00000000000002  Magnetococcus sp. MC-1  Bacteria  normal  0.169257  normal 
 
 
-
 
NC_012917  PC1_2472  transcriptional regulator, Crp/Fnr family  23.87 
 
 
238 aa  80.1  0.00000000000003  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.3707  n/a   
 
 
-
 
NC_012848  Rleg_4954  transcriptional regulator, Crp/Fnr family  29.77 
 
 
223 aa  78.6  0.0000000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  hitchhiker  0.00163752  normal 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  22.42 
 
 
225 aa  77.4  0.0000000000002  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2778  transcriptional regulator, Crp/Fnr family  24.41 
 
 
238 aa  77.4  0.0000000000002  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0529131  n/a   
 
 
-
 
NC_007651  BTH_I1801  cyclic nucleotide-binding domain-containing protein  26.51 
 
 
229 aa  76.6  0.0000000000003  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1669  Crp/FNR family transcriptional regulator  24.54 
 
 
233 aa  76.3  0.0000000000004  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1785  transcriptional regulator, Crp/Fnr family  26.22 
 
 
225 aa  76.3  0.0000000000004  Ralstonia pickettii 12D  Bacteria  normal  0.0232074  normal  0.813169 
 
 
-
 
NC_011992  Dtpsy_3443  transcriptional regulator, Crp/Fnr family  25.94 
 
 
229 aa  76.3  0.0000000000004  Acidovorax ebreus TPSY  Bacteria  normal  0.12986  n/a   
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  25 
 
 
236 aa  76.3  0.0000000000004  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_008836  BMA10229_A2895  cyclic nucleotide-binding domain-containing protein  27.31 
 
 
230 aa  76.3  0.0000000000005  Burkholderia mallei NCTC 10229  Bacteria  normal  0.869141  n/a   
 
 
-
 
NC_006348  BMA0619  cyclic nucleotide-binding domain-containing protein  27.31 
 
 
229 aa  76.3  0.0000000000005  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_2752  cyclic nucleotide-binding protein  27.31 
 
 
230 aa  76.3  0.0000000000005  Burkholderia pseudomallei 1106a  Bacteria  normal  0.339389  n/a   
 
 
-
 
NC_007434  BURPS1710b_2817  cyclic nucleotide-binding domain-containing protein  27.31 
 
 
229 aa  76.3  0.0000000000005  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1706  cyclic nucleotide-binding protein  27.31 
 
 
230 aa  76.3  0.0000000000005  Burkholderia mallei NCTC 10247  Bacteria  normal  0.450772  n/a   
 
 
-
 
NC_009074  BURPS668_2695  cyclic nucleotide-binding protein  27.31 
 
 
229 aa  76.3  0.0000000000005  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3081  CRP/FNR family transcriptional regulator  27.01 
 
 
249 aa  75.9  0.0000000000005  Marinobacter aquaeolei VT8  Bacteria  normal  0.0390484  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2392  cyclic nucleotide-binding domain-containing protein  27.31 
 
 
230 aa  76.3  0.0000000000005  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_2638  transcriptional regulator, Crp/Fnr family  30.81 
 
 
222 aa  75.9  0.0000000000006  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_3735  transcriptional regulator, Crp/Fnr family  30.36 
 
 
210 aa  75.9  0.0000000000006  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  24.17 
 
 
232 aa  75.5  0.0000000000008  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_010571  Oter_2867  Crp/FNR family transcriptional regulator  28.65 
 
 
241 aa  75.5  0.0000000000008  Opitutus terrae PB90-1  Bacteria  normal  0.343371  normal  0.792405 
 
 
-
 
NC_003296  RS02297  transcription regulator protein  26.61 
 
 
225 aa  75.1  0.000000000001  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.419231 
 
 
-
 
NC_007498  Pcar_2562  cyclic AMP receptor protein  32.32 
 
 
222 aa  75.1  0.000000000001  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.553837  n/a   
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  25 
 
 
236 aa  75.1  0.000000000001  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_007498  Pcar_1491  Crp/FNR family transcriptional regulator  26.83 
 
 
224 aa  74.3  0.000000000002  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000413534  n/a   
 
 
-
 
NC_013169  Ksed_20120  cAMP-binding protein  28.24 
 
 
223 aa  74.3  0.000000000002  Kytococcus sedentarius DSM 20547  Bacteria  hitchhiker  0.00290987  normal  0.0142715 
 
 
-
 
NC_008496  LEUM_A06  Crp-like transcriptional regulator  23.96 
 
 
230 aa  73.9  0.000000000002  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_0916  transcriptional regulator, Crp/Fnr family  29.68 
 
 
242 aa  73.6  0.000000000003  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_3583  transcriptional regulator, Crp/Fnr family  27.27 
 
 
225 aa  73.2  0.000000000004  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4660  transcriptional regulator, Crp/Fnr family  27.27 
 
 
225 aa  73.2  0.000000000004  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_1678  transcriptional regulator, Crp/Fnr family  22.93 
 
 
234 aa  72.4  0.000000000006  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_2109  transcriptional regulator, Crp/Fnr family  25.33 
 
 
225 aa  72.4  0.000000000007  Ralstonia pickettii 12J  Bacteria  normal  0.170093  normal 
 
 
-
 
NC_007406  Nwi_2417  cyclic nucleotide-binding protein  26.53 
 
 
250 aa  72  0.000000000008  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.034588  normal  0.0382931 
 
 
-
 
NC_007348  Reut_B5062  cyclic nucleotide-binding  26.01 
 
 
254 aa  70.5  0.00000000003  Ralstonia eutropha JMP134  Bacteria  normal  0.319018  n/a   
 
 
-
 
NC_013512  Sdel_0691  cyclic nucleotide-binding protein  27.23 
 
 
212 aa  70.5  0.00000000003  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
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