More than 300 homologs were found in PanDaTox collection
for query gene Oter_2867 on replicon NC_010571
Organism: Opitutus terrae PB90-1



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010571  Oter_2867  Crp/FNR family transcriptional regulator  100 
 
 
241 aa  483  1e-135  Opitutus terrae PB90-1  Bacteria  normal  0.343371  normal  0.792405 
 
 
-
 
NC_010571  Oter_0906  Crp/FNR family transcriptional regulator  49.33 
 
 
238 aa  202  3e-51  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  40.72 
 
 
228 aa  136  3.0000000000000003e-31  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  35.29 
 
 
231 aa  132  3.9999999999999996e-30  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  35.43 
 
 
227 aa  129  5.0000000000000004e-29  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  35.07 
 
 
229 aa  128  6e-29  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  33.18 
 
 
229 aa  128  7.000000000000001e-29  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  36.68 
 
 
228 aa  128  9.000000000000001e-29  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  38.43 
 
 
248 aa  127  2.0000000000000002e-28  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  37.27 
 
 
227 aa  127  2.0000000000000002e-28  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  37.67 
 
 
226 aa  124  1e-27  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  36.74 
 
 
229 aa  124  1e-27  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  33.64 
 
 
236 aa  121  9.999999999999999e-27  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  33.64 
 
 
227 aa  120  9.999999999999999e-27  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011662  Tmz1t_1286  transcriptional regulator, Crp/Fnr family  33.18 
 
 
227 aa  120  3e-26  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  33.18 
 
 
227 aa  119  3e-26  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_011761  AFE_0857  transcriptional regulator, Crp/Fnr family  35.27 
 
 
229 aa  119  6e-26  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0981  transcriptional regulator, Crp/Fnr family  35.27 
 
 
246 aa  119  6e-26  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0154476 
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  32.27 
 
 
241 aa  117  1.9999999999999998e-25  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  32.73 
 
 
229 aa  117  1.9999999999999998e-25  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  31.7 
 
 
230 aa  115  6e-25  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_008825  Mpe_A1691  CRP/FNR family transcriptional regulator  33.33 
 
 
232 aa  114  1.0000000000000001e-24  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00272653  normal  0.637065 
 
 
-
 
NC_007298  Daro_3198  Crp/FNR family transcriptional regulator  32.26 
 
 
231 aa  111  8.000000000000001e-24  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_1491  Crp/FNR family transcriptional regulator  31.43 
 
 
224 aa  111  1.0000000000000001e-23  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000413534  n/a   
 
 
-
 
NC_009953  Sare_4620  Crp/FNR family transcriptional regulator  33.48 
 
 
237 aa  109  4.0000000000000004e-23  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.128051 
 
 
-
 
NC_007298  Daro_1669  Crp/FNR family transcriptional regulator  29.36 
 
 
233 aa  106  3e-22  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0407  transcriptional regulator, Crp/Fnr family  34.8 
 
 
243 aa  105  8e-22  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  30.94 
 
 
227 aa  102  5e-21  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_2606  transcriptional regulator, Crp/Fnr family  30.17 
 
 
253 aa  101  9e-21  Thauera sp. MZ1T  Bacteria  normal  0.193309  n/a   
 
 
-
 
NC_011206  Lferr_1356  transcriptional regulator, Crp/Fnr family  31.34 
 
 
222 aa  100  2e-20  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_1658  transcriptional regulator, Crp/Fnr family  31.34 
 
 
222 aa  100  2e-20  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.365354  n/a   
 
 
-
 
NC_006348  BMA0619  cyclic nucleotide-binding domain-containing protein  31.75 
 
 
229 aa  100  3e-20  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_2752  cyclic nucleotide-binding protein  31.75 
 
 
230 aa  100  3e-20  Burkholderia pseudomallei 1106a  Bacteria  normal  0.339389  n/a   
 
 
-
 
NC_007434  BURPS1710b_2817  cyclic nucleotide-binding domain-containing protein  31.75 
 
 
229 aa  100  3e-20  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1706  cyclic nucleotide-binding protein  31.75 
 
 
230 aa  100  3e-20  Burkholderia mallei NCTC 10247  Bacteria  normal  0.450772  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2392  cyclic nucleotide-binding domain-containing protein  31.75 
 
 
230 aa  100  3e-20  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2895  cyclic nucleotide-binding domain-containing protein  31.75 
 
 
230 aa  100  3e-20  Burkholderia mallei NCTC 10229  Bacteria  normal  0.869141  n/a   
 
 
-
 
NC_008576  Mmc1_1531  Crp/FNR family transcriptional regulator  28.96 
 
 
239 aa  100  3e-20  Magnetococcus sp. MC-1  Bacteria  normal  0.169257  normal 
 
 
-
 
NC_009074  BURPS668_2695  cyclic nucleotide-binding protein  31.75 
 
 
229 aa  100  3e-20  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1801  cyclic nucleotide-binding domain-containing protein  31.28 
 
 
229 aa  98.6  8e-20  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  31.19 
 
 
222 aa  98.6  8e-20  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_0079  Crp/FNR family transcriptional regulator  30.84 
 
 
225 aa  98.2  1e-19  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.849443  normal  0.162256 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  30.91 
 
 
225 aa  98.2  1e-19  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_007908  Rfer_0060  Crp/FNR family transcriptional regulator  30.8 
 
 
234 aa  97.8  1e-19  Rhodoferax ferrireducens T118  Bacteria  normal  0.237094  n/a   
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  31.82 
 
 
226 aa  96.7  3e-19  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  28.02 
 
 
239 aa  95.5  7e-19  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_008576  Mmc1_0460  Crp/FNR family transcriptional regulator  30.7 
 
 
232 aa  95.1  8e-19  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.884408 
 
 
-
 
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  28.57 
 
 
254 aa  94  2e-18  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_011992  Dtpsy_1709  transcriptional regulator, Crp/Fnr family  28.63 
 
 
254 aa  94  2e-18  Acidovorax ebreus TPSY  Bacteria  normal  0.0525745  n/a   
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  27.4 
 
 
226 aa  94  2e-18  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1904  CRP/FNR family transcriptional regulator  28.63 
 
 
254 aa  94  2e-18  Acidovorax sp. JS42  Bacteria  normal  0.0603838  normal  0.510939 
 
 
-
 
NC_010524  Lcho_1454  Crp/FNR family transcriptional regulator  29 
 
 
252 aa  94.4  2e-18  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009952  Dshi_3189  transcriptional regulator  28.89 
 
 
236 aa  93.2  3e-18  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1619  cyclic nucleotide-binding  32.05 
 
 
235 aa  93.6  3e-18  Nocardioides sp. JS614  Bacteria  normal  0.146026  n/a   
 
 
-
 
NC_008686  Pden_2478  CRP/FNR family transcriptional regulator  30.18 
 
 
249 aa  92.8  5e-18  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.651433 
 
 
-
 
NC_009656  PSPA7_0628  transcriptional regulator Dnr  32.11 
 
 
227 aa  91.7  1e-17  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4660  transcriptional regulator, Crp/Fnr family  27.78 
 
 
225 aa  90.9  2e-17  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_3583  transcriptional regulator, Crp/Fnr family  27.78 
 
 
225 aa  90.9  2e-17  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_06870  transcriptional regulator Dnr  31.65 
 
 
227 aa  90.5  2e-17  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.156456  normal 
 
 
-
 
NC_007298  Daro_1036  cyclic nucleotide-binding  28.63 
 
 
245 aa  90.1  3e-17  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_1939  transcriptional regulator, Crp/Fnr family  29.13 
 
 
235 aa  90.1  3e-17  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  24.69 
 
 
243 aa  89  6e-17  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  25.93 
 
 
225 aa  88.6  8e-17  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_1010  CRP/FNR family transcriptional regulator  30.92 
 
 
257 aa  88.6  9e-17  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2685  cAMP-binding protein  27.27 
 
 
272 aa  87  2e-16  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_3466  regulator of Biofilm formation Fnr Family  27.98 
 
 
235 aa  87  3e-16  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0292  CRP/FNR family transcriptional regulator  30.19 
 
 
224 aa  87  3e-16  Roseiflexus sp. RS-1  Bacteria  normal  0.210312  normal  0.0189188 
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  24.88 
 
 
236 aa  85.9  6e-16  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  26.21 
 
 
352 aa  85.1  9e-16  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_007777  Francci3_3629  Crp/FNR family transcriptional regulator  28.26 
 
 
263 aa  84.7  0.000000000000001  Frankia sp. CcI3  Bacteria  normal  normal  0.332638 
 
 
-
 
NC_011830  Dhaf_3071  transcriptional regulator, Crp/Fnr family  29.7 
 
 
224 aa  84.7  0.000000000000001  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00222127  n/a   
 
 
-
 
NC_007643  Rru_A2636  Crp/FNR family transcriptional regulator  32.44 
 
 
234 aa  84  0.000000000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1678  transcriptional regulator, Crp/Fnr family  26.67 
 
 
234 aa  84  0.000000000000002  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  24.88 
 
 
236 aa  83.6  0.000000000000002  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_009436  Ent638_1853  fumarate/nitrate reduction transcriptional regulator  30.77 
 
 
250 aa  83.6  0.000000000000003  Enterobacter sp. 638  Bacteria  normal  normal  0.755428 
 
 
-
 
NC_007005  Psyr_3425  cyclic nucleotide-binding: regulatory protein, Crp  29.44 
 
 
244 aa  83.2  0.000000000000003  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0533041 
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  26.22 
 
 
249 aa  83.6  0.000000000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_003296  RS02297  transcription regulator protein  28.57 
 
 
225 aa  83.2  0.000000000000004  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.419231 
 
 
-
 
NC_011894  Mnod_2132  transcriptional regulator, Crp/Fnr family  32.07 
 
 
293 aa  83.2  0.000000000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.263338  n/a   
 
 
-
 
NC_011094  SeSA_A1785  fumarate/nitrate reduction transcriptional regulator  30.95 
 
 
250 aa  83.2  0.000000000000004  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.377507  normal  0.141635 
 
 
-
 
NC_011205  SeD_A1673  fumarate/nitrate reduction transcriptional regulator  30.95 
 
 
250 aa  83.2  0.000000000000004  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.349784  normal  0.0983377 
 
 
-
 
NC_011083  SeHA_C1845  fumarate/nitrate reduction transcriptional regulator  30.95 
 
 
250 aa  83.2  0.000000000000004  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.918423  normal 
 
 
-
 
NC_011080  SNSL254_A1783  fumarate/nitrate reduction transcriptional regulator  30.95 
 
 
250 aa  83.2  0.000000000000004  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.251439 
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  26.32 
 
 
234 aa  82.8  0.000000000000004  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_011149  SeAg_B1491  fumarate/nitrate reduction transcriptional regulator  30.95 
 
 
250 aa  83.2  0.000000000000004  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0202312  n/a   
 
 
-
 
NC_003910  CPS_1987  fumarate/nitrate reduction transcriptional regulator  30.3 
 
 
239 aa  82.8  0.000000000000005  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  23.94 
 
 
232 aa  82.8  0.000000000000005  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  28.83 
 
 
227 aa  82.8  0.000000000000005  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_0355  Crp-like transcriptional regulator  27.49 
 
 
221 aa  82.4  0.000000000000006  Oenococcus oeni PSU-1  Bacteria  normal  0.128458  n/a   
 
 
-
 
NC_012850  Rleg_3301  transcriptional regulator, Crp/Fnr family  27.32 
 
 
227 aa  82  0.000000000000007  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.306356 
 
 
-
 
NC_009831  Ssed_2219  fumarate/nitrate reduction transcriptional regulator  31.19 
 
 
249 aa  82.4  0.000000000000007  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_1981  fumarate/nitrate reduction transcriptional regulator  30.48 
 
 
250 aa  82  0.000000000000008  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.320226 
 
 
-
 
NC_009457  VC0395_A1045  fumarate/nitrate reduction transcriptional regulator  30.81 
 
 
250 aa  82  0.000000000000009  Vibrio cholerae O395  Bacteria  normal  0.18077  n/a   
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  26.24 
 
 
225 aa  81.6  0.000000000000009  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2311  transcriptional regulator, Crp/Fnr family  30.48 
 
 
250 aa  81.6  0.00000000000001  Escherichia coli DH1  Bacteria  normal  0.144598  n/a   
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  30.48 
 
 
250 aa  81.6  0.00000000000001  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  30.48 
 
 
250 aa  81.6  0.00000000000001  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
NC_009801  EcE24377A_1546  fumarate/nitrate reduction transcriptional regulator  30.48 
 
 
250 aa  81.6  0.00000000000001  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E1575  fumarate/nitrate reduction transcriptional regulator  30.48 
 
 
250 aa  81.6  0.00000000000001  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_1101  Crp/FNR family transcriptional regulator  27.95 
 
 
246 aa  81.3  0.00000000000001  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>