More than 300 homologs were found in PanDaTox collection
for query gene Reut_B5062 on replicon NC_007348
Organism: Ralstonia eutropha JMP134



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007348  Reut_B5062  cyclic nucleotide-binding  100 
 
 
254 aa  504  9.999999999999999e-143  Ralstonia eutropha JMP134  Bacteria  normal  0.319018  n/a   
 
 
-
 
NC_013510  Tcur_0407  transcriptional regulator, Crp/Fnr family  38.91 
 
 
243 aa  135  6.0000000000000005e-31  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A1691  CRP/FNR family transcriptional regulator  37.05 
 
 
232 aa  134  1.9999999999999998e-30  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00272653  normal  0.637065 
 
 
-
 
NC_003296  RS02297  transcription regulator protein  35.81 
 
 
225 aa  132  3.9999999999999996e-30  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.419231 
 
 
-
 
NC_007298  Daro_1036  cyclic nucleotide-binding  36.15 
 
 
245 aa  131  1.0000000000000001e-29  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1785  transcriptional regulator, Crp/Fnr family  34.88 
 
 
225 aa  129  5.0000000000000004e-29  Ralstonia pickettii 12D  Bacteria  normal  0.0232074  normal  0.813169 
 
 
-
 
NC_010678  Rpic_4660  transcriptional regulator, Crp/Fnr family  34.42 
 
 
225 aa  129  5.0000000000000004e-29  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_3583  transcriptional regulator, Crp/Fnr family  34.42 
 
 
225 aa  129  5.0000000000000004e-29  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_2109  transcriptional regulator, Crp/Fnr family  34.42 
 
 
225 aa  127  2.0000000000000002e-28  Ralstonia pickettii 12J  Bacteria  normal  0.170093  normal 
 
 
-
 
NC_011662  Tmz1t_1286  transcriptional regulator, Crp/Fnr family  33.03 
 
 
227 aa  124  1e-27  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0060  Crp/FNR family transcriptional regulator  32.02 
 
 
234 aa  122  8e-27  Rhodoferax ferrireducens T118  Bacteria  normal  0.237094  n/a   
 
 
-
 
NC_011662  Tmz1t_2606  transcriptional regulator, Crp/Fnr family  33.48 
 
 
253 aa  118  7.999999999999999e-26  Thauera sp. MZ1T  Bacteria  normal  0.193309  n/a   
 
 
-
 
NC_007298  Daro_3198  Crp/FNR family transcriptional regulator  32.27 
 
 
231 aa  118  9.999999999999999e-26  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009076  BURPS1106A_2752  cyclic nucleotide-binding protein  33.18 
 
 
230 aa  115  5e-25  Burkholderia pseudomallei 1106a  Bacteria  normal  0.339389  n/a   
 
 
-
 
NC_008836  BMA10229_A2895  cyclic nucleotide-binding domain-containing protein  33.18 
 
 
230 aa  115  5e-25  Burkholderia mallei NCTC 10229  Bacteria  normal  0.869141  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2392  cyclic nucleotide-binding domain-containing protein  33.18 
 
 
230 aa  115  5e-25  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1706  cyclic nucleotide-binding protein  33.18 
 
 
230 aa  115  5e-25  Burkholderia mallei NCTC 10247  Bacteria  normal  0.450772  n/a   
 
 
-
 
NC_006348  BMA0619  cyclic nucleotide-binding domain-containing protein  33.18 
 
 
229 aa  115  6e-25  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2817  cyclic nucleotide-binding domain-containing protein  33.18 
 
 
229 aa  115  6e-25  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_2695  cyclic nucleotide-binding protein  33.18 
 
 
229 aa  115  6e-25  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1801  cyclic nucleotide-binding domain-containing protein  32.72 
 
 
229 aa  115  8.999999999999998e-25  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_4620  Crp/FNR family transcriptional regulator  34.67 
 
 
237 aa  112  8.000000000000001e-24  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.128051 
 
 
-
 
NC_007298  Daro_1669  Crp/FNR family transcriptional regulator  33.96 
 
 
233 aa  107  1e-22  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_0079  Crp/FNR family transcriptional regulator  33.5 
 
 
225 aa  107  2e-22  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.849443  normal  0.162256 
 
 
-
 
NC_010524  Lcho_1454  Crp/FNR family transcriptional regulator  28.57 
 
 
252 aa  103  4e-21  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  33.18 
 
 
226 aa  102  4e-21  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_008782  Ajs_1904  CRP/FNR family transcriptional regulator  27.8 
 
 
254 aa  102  7e-21  Acidovorax sp. JS42  Bacteria  normal  0.0603838  normal  0.510939 
 
 
-
 
NC_011992  Dtpsy_1709  transcriptional regulator, Crp/Fnr family  27.8 
 
 
254 aa  102  7e-21  Acidovorax ebreus TPSY  Bacteria  normal  0.0525745  n/a   
 
 
-
 
NC_011206  Lferr_1356  transcriptional regulator, Crp/Fnr family  32.58 
 
 
222 aa  101  1e-20  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_1658  transcriptional regulator, Crp/Fnr family  32.58 
 
 
222 aa  101  1e-20  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.365354  n/a   
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  32.3 
 
 
248 aa  100  2e-20  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  30.09 
 
 
228 aa  100  2e-20  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_008576  Mmc1_0460  Crp/FNR family transcriptional regulator  34.03 
 
 
232 aa  99.4  5e-20  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.884408 
 
 
-
 
NC_011992  Dtpsy_3443  transcriptional regulator, Crp/Fnr family  31.48 
 
 
229 aa  98.2  1e-19  Acidovorax ebreus TPSY  Bacteria  normal  0.12986  n/a   
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  30.67 
 
 
229 aa  95.5  7e-19  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_011206  Lferr_0981  transcriptional regulator, Crp/Fnr family  34.2 
 
 
246 aa  95.1  9e-19  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0154476 
 
 
-
 
NC_011761  AFE_0857  transcriptional regulator, Crp/Fnr family  34.2 
 
 
229 aa  95.1  9e-19  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2685  cAMP-binding protein  30.34 
 
 
272 aa  94.4  2e-18  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  30.23 
 
 
227 aa  92  7e-18  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  30.41 
 
 
254 aa  91.7  1e-17  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  29.15 
 
 
230 aa  91.3  1e-17  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_008576  Mmc1_1531  Crp/FNR family transcriptional regulator  31.96 
 
 
239 aa  89.7  4e-17  Magnetococcus sp. MC-1  Bacteria  normal  0.169257  normal 
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  31.13 
 
 
228 aa  89.4  5e-17  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  27.16 
 
 
227 aa  89.4  5e-17  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007498  Pcar_1491  Crp/FNR family transcriptional regulator  29.33 
 
 
224 aa  88.2  1e-16  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000413534  n/a   
 
 
-
 
NC_010571  Oter_0906  Crp/FNR family transcriptional regulator  30.41 
 
 
238 aa  87.8  1e-16  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  30.04 
 
 
229 aa  88.6  1e-16  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  26.29 
 
 
227 aa  87  2e-16  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  29.96 
 
 
227 aa  87.8  2e-16  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_010730  SYO3AOP1_0465  transcriptional regulator, Crp/Fnr family  26.15 
 
 
223 aa  87  2e-16  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00000000196856  n/a   
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  27.51 
 
 
243 aa  87  2e-16  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  27.27 
 
 
229 aa  85.5  7e-16  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  31.2 
 
 
231 aa  84.3  0.000000000000001  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_2102  CRP/FNR family transcriptional regulator  27.44 
 
 
227 aa  85.1  0.000000000000001  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  31.2 
 
 
231 aa  84.3  0.000000000000001  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  29.41 
 
 
231 aa  85.1  0.000000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  24.54 
 
 
243 aa  85.1  0.000000000000001  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_011126  HY04AAS1_0349  transcriptional regulator, Crp/Fnr family  28.9 
 
 
219 aa  84  0.000000000000002  Hydrogenobaculum sp. Y04AAS1  Bacteria  hitchhiker  0.000181532  n/a   
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  25.71 
 
 
219 aa  83.6  0.000000000000003  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_011662  Tmz1t_2638  transcriptional regulator, Crp/Fnr family  31.02 
 
 
222 aa  83.2  0.000000000000004  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  26.36 
 
 
241 aa  82.8  0.000000000000005  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2562  cyclic AMP receptor protein  30 
 
 
222 aa  82  0.000000000000007  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.553837  n/a   
 
 
-
 
NC_009952  Dshi_3191  transcriptional regulator Dnr  29.15 
 
 
227 aa  82  0.000000000000007  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0628  transcriptional regulator Dnr  30.18 
 
 
227 aa  81.6  0.000000000000009  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_06870  transcriptional regulator Dnr  30.18 
 
 
227 aa  81.6  0.00000000000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.156456  normal 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  29.39 
 
 
225 aa  81.3  0.00000000000001  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3341  Crp/FNR family transcriptional regulator  35.02 
 
 
221 aa  80.5  0.00000000000002  Acidovorax sp. JS42  Bacteria  normal  normal  0.0836398 
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  27.65 
 
 
229 aa  80.5  0.00000000000002  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  26.13 
 
 
236 aa  79.7  0.00000000000004  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_3189  transcriptional regulator  29.23 
 
 
236 aa  79  0.00000000000007  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_1297  Crp/FNR family transcriptional regulator  26.7 
 
 
222 aa  79  0.00000000000007  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  30.36 
 
 
227 aa  79  0.00000000000007  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_3444  cyclic nucleotide-binding  27.31 
 
 
250 aa  78.6  0.00000000000008  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3427  Crp/FNR family transcriptional regulator  29.33 
 
 
223 aa  78.6  0.0000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0598833  hitchhiker  0.00496827 
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  29.65 
 
 
240 aa  77.8  0.0000000000001  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_013946  Mrub_2129  Crp/Fnr family transcriptional regulator  27.27 
 
 
225 aa  77.8  0.0000000000002  Meiothermus ruber DSM 1279  Bacteria  normal  0.185639  normal  0.344505 
 
 
-
 
NC_011992  Dtpsy_2689  transcriptional regulator, Crp/Fnr family  33.64 
 
 
246 aa  77  0.0000000000002  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009715  CCV52592_0436  transcription regulator  26.73 
 
 
214 aa  77  0.0000000000003  Campylobacter curvus 525.92  Bacteria  normal  0.0316636  n/a   
 
 
-
 
NC_009511  Swit_2706  Crp/FNR family transcriptional regulator  28.05 
 
 
228 aa  76.6  0.0000000000004  Sphingomonas wittichii RW1  Bacteria  normal  0.154877  normal 
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  28.76 
 
 
249 aa  76.6  0.0000000000004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_013169  Ksed_20120  cAMP-binding protein  29.39 
 
 
223 aa  76.3  0.0000000000004  Kytococcus sedentarius DSM 20547  Bacteria  hitchhiker  0.00290987  normal  0.0142715 
 
 
-
 
NC_009523  RoseRS_0292  CRP/FNR family transcriptional regulator  28.37 
 
 
224 aa  76.3  0.0000000000005  Roseiflexus sp. RS-1  Bacteria  normal  0.210312  normal  0.0189188 
 
 
-
 
NC_009092  Shew_3331  Crp/FNR family transcriptional regulator  28.37 
 
 
258 aa  76.3  0.0000000000005  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_011883  Ddes_0528  transcriptional regulator, Crp/Fnr family  30.88 
 
 
244 aa  75.9  0.0000000000006  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4483  transcriptional regulator, Crp/Fnr family  31.86 
 
 
243 aa  75.5  0.0000000000007  Ralstonia pickettii 12J  Bacteria  normal  normal  0.183908 
 
 
-
 
NC_008740  Maqu_3081  CRP/FNR family transcriptional regulator  25 
 
 
249 aa  75.9  0.0000000000007  Marinobacter aquaeolei VT8  Bacteria  normal  0.0390484  n/a   
 
 
-
 
NC_011887  Mnod_8112  transcriptional regulator, Crp/Fnr family  28.77 
 
 
229 aa  75.5  0.0000000000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_012857  Rpic12D_4617  transcriptional regulator, Crp/Fnr family  31.86 
 
 
243 aa  75.5  0.0000000000007  Ralstonia pickettii 12D  Bacteria  normal  0.652735  normal 
 
 
-
 
NC_008686  Pden_2478  CRP/FNR family transcriptional regulator  31.07 
 
 
249 aa  75.5  0.0000000000007  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.651433 
 
 
-
 
NC_013512  Sdel_0691  cyclic nucleotide-binding protein  28.57 
 
 
212 aa  75.5  0.0000000000009  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_2867  Crp/FNR family transcriptional regulator  29.95 
 
 
241 aa  75.1  0.0000000000009  Opitutus terrae PB90-1  Bacteria  normal  0.343371  normal  0.792405 
 
 
-
 
NC_009668  Oant_4381  CRP/FNR family transcriptional regulator  29.49 
 
 
231 aa  74.7  0.000000000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009802  CCC13826_1550  protein YieJ  25.11 
 
 
212 aa  74.7  0.000000000001  Campylobacter concisus 13826  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_2884  Crp/FNR family transcriptional regulator  28.18 
 
 
218 aa  73.9  0.000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.161359  n/a   
 
 
-
 
NC_007952  Bxe_B0027  Crp/FNR family transcriptional regulator  30.74 
 
 
237 aa  74.3  0.000000000002  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_0719  transcriptional regulator, Crp/Fnr family  27.56 
 
 
257 aa  73.9  0.000000000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000204419 
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  30.4 
 
 
222 aa  73.6  0.000000000003  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_1012  Crp/FNR family transcriptional regulator  26.99 
 
 
241 aa  73.2  0.000000000003  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.88102  normal  0.736744 
 
 
-
 
NC_007575  Suden_1312  CRP/FNR family transcriptional regulator  24.88 
 
 
209 aa  73.2  0.000000000004  Sulfurimonas denitrificans DSM 1251  Bacteria  decreased coverage  0.000433355  n/a   
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  24.39 
 
 
232 aa  73.2  0.000000000004  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
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