More than 300 homologs were found in PanDaTox collection
for query gene Dshi_3191 on replicon NC_009952
Organism: Dinoroseobacter shibae DFL 12



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009952  Dshi_3191  transcriptional regulator Dnr  100 
 
 
227 aa  457  9.999999999999999e-129  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_3189  transcriptional regulator  43.05 
 
 
236 aa  184  1.0000000000000001e-45  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_1012  Crp/FNR family transcriptional regulator  37.05 
 
 
241 aa  146  2.0000000000000003e-34  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.88102  normal  0.736744 
 
 
-
 
NC_007958  RPD_1522  cyclic nucleotide-binding  37.05 
 
 
241 aa  145  4.0000000000000006e-34  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.500349  normal  0.967279 
 
 
-
 
NC_011004  Rpal_0740  transcriptional regulator, Crp/Fnr family  36.61 
 
 
255 aa  145  7.0000000000000006e-34  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_2478  CRP/FNR family transcriptional regulator  36.84 
 
 
249 aa  140  9.999999999999999e-33  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.651433 
 
 
-
 
NC_013510  Tcur_0407  transcriptional regulator, Crp/Fnr family  33.01 
 
 
243 aa  114  1.0000000000000001e-24  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_1658  transcriptional regulator, Crp/Fnr family  26.9 
 
 
222 aa  97.8  1e-19  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.365354  n/a   
 
 
-
 
NC_011206  Lferr_1356  transcriptional regulator, Crp/Fnr family  26.9 
 
 
222 aa  97.8  1e-19  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_0857  transcriptional regulator, Crp/Fnr family  28.64 
 
 
229 aa  95.5  6e-19  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0981  transcriptional regulator, Crp/Fnr family  28.64 
 
 
246 aa  95.1  7e-19  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0154476 
 
 
-
 
NC_009092  Shew_3331  Crp/FNR family transcriptional regulator  27.27 
 
 
258 aa  94  2e-18  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2685  cAMP-binding protein  27.15 
 
 
272 aa  93.6  2e-18  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0628  transcriptional regulator Dnr  30.85 
 
 
227 aa  93.2  3e-18  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_06870  transcriptional regulator Dnr  30.85 
 
 
227 aa  92.8  4e-18  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.156456  normal 
 
 
-
 
NC_011989  Avi_3466  regulator of Biofilm formation Fnr Family  30.69 
 
 
235 aa  92  6e-18  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_4014  transcriptional regulator, Crp/Fnr family  30.3 
 
 
233 aa  91.3  1e-17  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1286  transcriptional regulator, Crp/Fnr family  26.82 
 
 
227 aa  90.9  1e-17  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0060  Crp/FNR family transcriptional regulator  29.82 
 
 
234 aa  90.1  2e-17  Rhodoferax ferrireducens T118  Bacteria  normal  0.237094  n/a   
 
 
-
 
NC_009636  Smed_2376  CRP/FNR family transcriptional regulator  29.91 
 
 
226 aa  90.5  2e-17  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.253524 
 
 
-
 
NC_007643  Rru_A2635  Crp/FNR family transcriptional regulator  33.91 
 
 
252 aa  89.4  5e-17  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.545323  n/a   
 
 
-
 
NC_009953  Sare_4620  Crp/FNR family transcriptional regulator  29.91 
 
 
237 aa  89  5e-17  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.128051 
 
 
-
 
NC_008836  BMA10229_A2895  cyclic nucleotide-binding domain-containing protein  30.62 
 
 
230 aa  89  6e-17  Burkholderia mallei NCTC 10229  Bacteria  normal  0.869141  n/a   
 
 
-
 
NC_009076  BURPS1106A_2752  cyclic nucleotide-binding protein  30.62 
 
 
230 aa  89  6e-17  Burkholderia pseudomallei 1106a  Bacteria  normal  0.339389  n/a   
 
 
-
 
NC_009080  BMA10247_1706  cyclic nucleotide-binding protein  30.62 
 
 
230 aa  89  6e-17  Burkholderia mallei NCTC 10247  Bacteria  normal  0.450772  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2392  cyclic nucleotide-binding domain-containing protein  30.62 
 
 
230 aa  89  6e-17  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0460  Crp/FNR family transcriptional regulator  27.09 
 
 
232 aa  89  6e-17  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.884408 
 
 
-
 
NC_011662  Tmz1t_2606  transcriptional regulator, Crp/Fnr family  29.08 
 
 
253 aa  88.6  7e-17  Thauera sp. MZ1T  Bacteria  normal  0.193309  n/a   
 
 
-
 
NC_006348  BMA0619  cyclic nucleotide-binding domain-containing protein  30.62 
 
 
229 aa  88.6  7e-17  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2817  cyclic nucleotide-binding domain-containing protein  30.62 
 
 
229 aa  88.6  7e-17  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_2695  cyclic nucleotide-binding protein  30.62 
 
 
229 aa  88.6  7e-17  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1801  cyclic nucleotide-binding domain-containing protein  29.67 
 
 
229 aa  86.7  3e-16  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  28.89 
 
 
241 aa  85.1  9e-16  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0079  Crp/FNR family transcriptional regulator  26.11 
 
 
225 aa  84.7  0.000000000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.849443  normal  0.162256 
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  33.51 
 
 
228 aa  84.7  0.000000000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_008825  Mpe_A1691  CRP/FNR family transcriptional regulator  29.3 
 
 
232 aa  84.3  0.000000000000001  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00272653  normal  0.637065 
 
 
-
 
NC_010511  M446_6132  Crp/FNR family transcriptional regulator  31.6 
 
 
245 aa  84  0.000000000000002  Methylobacterium sp. 4-46  Bacteria  normal  0.0884478  normal 
 
 
-
 
NC_008576  Mmc1_1531  Crp/FNR family transcriptional regulator  28.09 
 
 
239 aa  84  0.000000000000002  Magnetococcus sp. MC-1  Bacteria  normal  0.169257  normal 
 
 
-
 
NC_007298  Daro_3198  Crp/FNR family transcriptional regulator  25 
 
 
231 aa  83.2  0.000000000000003  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5062  cyclic nucleotide-binding  29.15 
 
 
254 aa  82.8  0.000000000000004  Ralstonia eutropha JMP134  Bacteria  normal  0.319018  n/a   
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  28.63 
 
 
230 aa  82.8  0.000000000000004  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_007643  Rru_A2636  Crp/FNR family transcriptional regulator  30.46 
 
 
234 aa  82.8  0.000000000000004  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011126  HY04AAS1_0349  transcriptional regulator, Crp/Fnr family  24.88 
 
 
219 aa  82.8  0.000000000000004  Hydrogenobaculum sp. Y04AAS1  Bacteria  hitchhiker  0.000181532  n/a   
 
 
-
 
NC_007954  Sden_3444  cyclic nucleotide-binding  26.67 
 
 
250 aa  82.4  0.000000000000005  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  29.08 
 
 
248 aa  81.3  0.00000000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  29.84 
 
 
229 aa  80.9  0.00000000000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  29.38 
 
 
229 aa  80.1  0.00000000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_1709  transcriptional regulator, Crp/Fnr family  27.12 
 
 
254 aa  80.1  0.00000000000002  Acidovorax ebreus TPSY  Bacteria  normal  0.0525745  n/a   
 
 
-
 
NC_008782  Ajs_1904  CRP/FNR family transcriptional regulator  27.12 
 
 
254 aa  80.1  0.00000000000002  Acidovorax sp. JS42  Bacteria  normal  0.0603838  normal  0.510939 
 
 
-
 
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  27.23 
 
 
254 aa  78.6  0.00000000000007  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_009621  Smed_5927  cyclic nucleotide-binding protein  25.65 
 
 
226 aa  78.6  0.00000000000008  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.514964 
 
 
-
 
NC_012850  Rleg_3301  transcriptional regulator, Crp/Fnr family  24.53 
 
 
227 aa  78.2  0.00000000000009  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.306356 
 
 
-
 
NC_007575  Suden_1312  CRP/FNR family transcriptional regulator  23.23 
 
 
209 aa  78.2  0.00000000000009  Sulfurimonas denitrificans DSM 1251  Bacteria  decreased coverage  0.000433355  n/a   
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  25.6 
 
 
227 aa  78.2  0.00000000000009  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_008740  Maqu_3081  CRP/FNR family transcriptional regulator  27.62 
 
 
249 aa  78.2  0.00000000000009  Marinobacter aquaeolei VT8  Bacteria  normal  0.0390484  n/a   
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  25.6 
 
 
227 aa  78.2  0.00000000000009  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  23.39 
 
 
225 aa  77.8  0.0000000000001  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  27.27 
 
 
229 aa  77.4  0.0000000000001  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_010571  Oter_0906  Crp/FNR family transcriptional regulator  25.62 
 
 
238 aa  77.4  0.0000000000002  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0301  transcriptional activator FtrB  28.51 
 
 
236 aa  77  0.0000000000002  Brucella suis 1330  Bacteria  normal  0.025844  n/a   
 
 
-
 
NC_009504  BOV_A0277  transcriptional activator FtrB  28.51 
 
 
236 aa  77  0.0000000000002  Brucella ovis ATCC 25840  Bacteria  normal  0.739319  n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  27.75 
 
 
231 aa  76.6  0.0000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_012848  Rleg_4954  transcriptional regulator, Crp/Fnr family  28.37 
 
 
223 aa  76.6  0.0000000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  hitchhiker  0.00163752  normal 
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  29.68 
 
 
227 aa  75.9  0.0000000000005  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  25.11 
 
 
227 aa  75.9  0.0000000000005  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_011894  Mnod_0422  transcriptional regulator, Crp/Fnr family  34.87 
 
 
246 aa  75.9  0.0000000000005  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_2867  Crp/FNR family transcriptional regulator  26.6 
 
 
241 aa  75.5  0.0000000000006  Opitutus terrae PB90-1  Bacteria  normal  0.343371  normal  0.792405 
 
 
-
 
NC_008262  CPR_1062  Crp/FNR family transcriptional regulator  24.07 
 
 
236 aa  75.5  0.0000000000006  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1669  Crp/FNR family transcriptional regulator  22.79 
 
 
233 aa  75.1  0.0000000000009  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_3443  transcriptional regulator, Crp/Fnr family  26.18 
 
 
229 aa  75.1  0.0000000000009  Acidovorax ebreus TPSY  Bacteria  normal  0.12986  n/a   
 
 
-
 
NC_008261  CPF_1250  Crp/FNR family transcriptional regulator  23.61 
 
 
236 aa  74.7  0.000000000001  Clostridium perfringens ATCC 13124  Bacteria  normal  0.403908  n/a   
 
 
-
 
NC_008347  Mmar10_2709  transcriptional activator FtrB  25.68 
 
 
232 aa  74.7  0.000000000001  Maricaulis maris MCS10  Bacteria  normal  normal  0.0829617 
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  27.08 
 
 
229 aa  74.7  0.000000000001  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
NC_008340  Mlg_0319  Crp/FNR family transcriptional regulator  28.99 
 
 
262 aa  73.6  0.000000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_1036  cyclic nucleotide-binding  25.25 
 
 
245 aa  73.6  0.000000000003  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_2472  transcriptional regulator, Crp/Fnr family  26.6 
 
 
238 aa  73.6  0.000000000003  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.3707  n/a   
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  29.95 
 
 
236 aa  72.8  0.000000000004  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_008531  LEUM_2066  Crp/FNR family transcriptional regulator  28 
 
 
224 aa  71.6  0.000000000008  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  0.0111986  n/a   
 
 
-
 
NC_009485  BBta_6723  putative cyclic-AMP receptor-like protein  24.17 
 
 
235 aa  70.5  0.00000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.823634  normal 
 
 
-
 
NC_010505  Mrad2831_2595  Crp/FNR family transcriptional regulator  30.57 
 
 
251 aa  70.5  0.00000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.396823  normal 
 
 
-
 
NC_013421  Pecwa_2778  transcriptional regulator, Crp/Fnr family  26.11 
 
 
238 aa  70.5  0.00000000002  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0529131  n/a   
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  22.61 
 
 
227 aa  70.1  0.00000000003  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  22.78 
 
 
239 aa  70.1  0.00000000003  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_010172  Mext_1357  cyclic nucleotide-binding  29.8 
 
 
250 aa  69.3  0.00000000004  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.395788 
 
 
-
 
NC_007794  Saro_2581  Crp/FNR family transcriptional regulator  25.22 
 
 
231 aa  69.3  0.00000000005  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.658135  n/a   
 
 
-
 
NC_011831  Cagg_2668  transcriptional regulator, Crp/Fnr family  27.41 
 
 
225 aa  69.3  0.00000000005  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0967754  hitchhiker  0.000000348595 
 
 
-
 
NC_013093  Amir_5783  transcriptional regulator, Crp/Fnr family  30.37 
 
 
212 aa  68.9  0.00000000005  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.00268451  n/a   
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  26.32 
 
 
228 aa  68.9  0.00000000006  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_011831  Cagg_1798  transcriptional regulator, Crp/Fnr family  25.81 
 
 
224 aa  68.6  0.00000000007  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.112724  normal  0.701218 
 
 
-
 
NC_013169  Ksed_20120  cAMP-binding protein  27.19 
 
 
223 aa  68.6  0.00000000008  Kytococcus sedentarius DSM 20547  Bacteria  hitchhiker  0.00290987  normal  0.0142715 
 
 
-
 
NC_011757  Mchl_1557  transcriptional regulator, Crp/Fnr family  29.29 
 
 
250 aa  68.6  0.00000000008  Methylobacterium chloromethanicum CM4  Bacteria  decreased coverage  0.00717235  normal 
 
 
-
 
NC_007498  Pcar_2562  cyclic AMP receptor protein  27.38 
 
 
222 aa  68.2  0.00000000009  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.553837  n/a   
 
 
-
 
NC_003296  RS02297  transcription regulator protein  25.38 
 
 
225 aa  67.8  0.0000000001  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.419231 
 
 
-
 
NC_012857  Rpic12D_3583  transcriptional regulator, Crp/Fnr family  26.6 
 
 
225 aa  67.8  0.0000000001  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4660  transcriptional regulator, Crp/Fnr family  26.6 
 
 
225 aa  67.8  0.0000000001  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_2689  transcriptional regulator, Crp/Fnr family  29.95 
 
 
246 aa  67.8  0.0000000001  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2845  cyclic nucleotide-binding domain-containing protein  23.15 
 
 
226 aa  68.2  0.0000000001  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2531  cyclic nucleotide-binding domain-containing protein  22.67 
 
 
226 aa  67.8  0.0000000001  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1454  Crp/FNR family transcriptional regulator  24.57 
 
 
252 aa  67.8  0.0000000001  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010730  SYO3AOP1_0465  transcriptional regulator, Crp/Fnr family  21.54 
 
 
223 aa  67  0.0000000002  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00000000196856  n/a   
 
 
-
 
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