More than 300 homologs were found in PanDaTox collection
for query gene BBta_6723 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_6723  putative cyclic-AMP receptor-like protein  100 
 
 
235 aa  481  1e-135  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.823634  normal 
 
 
-
 
NC_007925  RPC_4410  Crp/FNR family transcriptional regulator  53.24 
 
 
225 aa  226  2e-58  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.994375  normal  0.444525 
 
 
-
 
NC_007964  Nham_2535  cyclic nucleotide-binding domain-containing protein  52.36 
 
 
228 aa  219  3e-56  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4909  transcriptional regulator, Crp/Fnr family  53.05 
 
 
221 aa  215  4e-55  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.385812  n/a   
 
 
-
 
NC_007958  RPD_1742  cyclic nucleotide-binding  48.67 
 
 
251 aa  214  9.999999999999999e-55  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_0065  Crp/FNR family transcriptional regulator  47.81 
 
 
258 aa  198  5e-50  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0605636  normal 
 
 
-
 
NC_007778  RPB_3749  Crp/FNR family transcriptional regulator  51.39 
 
 
228 aa  198  7e-50  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.9168  normal 
 
 
-
 
NC_007778  RPB_4231  Crp/FNR family transcriptional regulator  52.56 
 
 
220 aa  197  7.999999999999999e-50  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.572136 
 
 
-
 
NC_007958  RPD_4082  cyclic nucleotide-binding  52.36 
 
 
220 aa  197  9e-50  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1632  Crp/FNR family transcriptional regulator  48.33 
 
 
250 aa  196  3e-49  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1723  cyclic nucleotide-binding  51.39 
 
 
228 aa  192  3e-48  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.637067  normal 
 
 
-
 
NC_011004  Rpal_4383  transcriptional regulator, Crp/Fnr family  50.7 
 
 
221 aa  189  4e-47  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.140178  n/a   
 
 
-
 
NC_013131  Caci_2591  transcriptional regulator, Crp/Fnr family  33.9 
 
 
221 aa  97.1  2e-19  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.44001  normal 
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  27.01 
 
 
352 aa  90.1  3e-17  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_013132  Cpin_5556  transcriptional regulator, Crp/Fnr family  29.89 
 
 
352 aa  89.4  5e-17  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.487576  normal  0.0420739 
 
 
-
 
NC_013730  Slin_1271  transcriptional regulator, Crp/Fnr family  27.66 
 
 
350 aa  88.6  7e-17  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  27.85 
 
 
242 aa  88.6  8e-17  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  26.77 
 
 
224 aa  88.2  9e-17  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  28.02 
 
 
225 aa  87.8  1e-16  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  28.02 
 
 
225 aa  87.4  2e-16  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  27.92 
 
 
220 aa  87  2e-16  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_013037  Dfer_5316  transcriptional regulator, Crp/Fnr family  26.8 
 
 
354 aa  86.7  3e-16  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.100222 
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  27.47 
 
 
225 aa  85.9  5e-16  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_3553  transcriptional regulator, Crp/Fnr family  28.72 
 
 
348 aa  85.5  6e-16  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.528491 
 
 
-
 
NC_008148  Rxyl_2796  Crp/FNR family transcriptional regulator  25.48 
 
 
250 aa  85.1  8e-16  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  25.84 
 
 
243 aa  84.7  0.000000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_008255  CHU_1132  transcriptional regulator  26.32 
 
 
355 aa  84.7  0.000000000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.99008 
 
 
-
 
NC_009767  Rcas_0291  Crp/FNR family transcriptional regulator  30.9 
 
 
227 aa  84.3  0.000000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.277011  normal 
 
 
-
 
NC_013440  Hoch_2081  transcriptional regulator, Crp/Fnr family  28.08 
 
 
229 aa  84.3  0.000000000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.264181  normal 
 
 
-
 
NC_011004  Rpal_4520  transcriptional regulator, Crp/Fnr family  25.73 
 
 
236 aa  82.4  0.000000000000005  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  28.42 
 
 
224 aa  82.4  0.000000000000005  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_1523  transcriptional regulator, Crp/Fnr family  28.72 
 
 
231 aa  82  0.000000000000007  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  25.13 
 
 
225 aa  81.3  0.00000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_1294  cyclic nucleotide-binding: regulatory protein, Crp  26.84 
 
 
220 aa  80.5  0.00000000000002  Dechloromonas aromatica RCB  Bacteria  normal  0.957461  normal  0.413121 
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  26.7 
 
 
226 aa  80.9  0.00000000000002  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_007778  RPB_1465  Crp/FNR family transcriptional regulator  30.69 
 
 
236 aa  80.9  0.00000000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.342125  normal  0.439299 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  26.88 
 
 
228 aa  80.5  0.00000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  25.65 
 
 
226 aa  80.1  0.00000000000003  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_008025  Dgeo_0106  Crp/FNR family transcriptional regulator  28.72 
 
 
254 aa  80.1  0.00000000000003  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  29.35 
 
 
225 aa  79.7  0.00000000000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_009921  Franean1_1101  Crp/FNR family transcriptional regulator  26.6 
 
 
246 aa  79.3  0.00000000000004  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_2750  transcriptional regulator, Crp/Fnr family  28.57 
 
 
222 aa  79  0.00000000000006  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.0000000354449  normal  0.602467 
 
 
-
 
NC_007298  Daro_3198  Crp/FNR family transcriptional regulator  25.51 
 
 
231 aa  78.2  0.00000000000009  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  26.24 
 
 
226 aa  77.8  0.0000000000001  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1896  cyclic nucleotide-binding protein  27.43 
 
 
218 aa  77  0.0000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_3629  Crp/FNR family transcriptional regulator  27.87 
 
 
263 aa  77.4  0.0000000000002  Frankia sp. CcI3  Bacteria  normal  normal  0.332638 
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  26.92 
 
 
225 aa  77.4  0.0000000000002  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  26.63 
 
 
228 aa  77  0.0000000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  30.17 
 
 
232 aa  76.3  0.0000000000004  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  25.27 
 
 
225 aa  76.3  0.0000000000004  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  28.09 
 
 
225 aa  75.9  0.0000000000005  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_009523  RoseRS_4027  cyclic nucleotide-binding protein  30.1 
 
 
216 aa  75.9  0.0000000000005  Roseiflexus sp. RS-1  Bacteria  normal  0.357709  normal 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  24.73 
 
 
219 aa  75.5  0.0000000000006  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  24.73 
 
 
225 aa  75.5  0.0000000000007  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  24.73 
 
 
226 aa  75.1  0.0000000000008  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  24.75 
 
 
247 aa  74.3  0.000000000001  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  27.84 
 
 
223 aa  74.7  0.000000000001  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_010725  Mpop_4187  transcriptional regulator, Crp/Fnr family  26.36 
 
 
254 aa  74.7  0.000000000001  Methylobacterium populi BJ001  Bacteria  normal  0.338954  normal 
 
 
-
 
NC_010172  Mext_3348  cyclic nucleotide-binding  26.58 
 
 
254 aa  74.7  0.000000000001  Methylobacterium extorquens PA1  Bacteria  normal  0.181039  normal 
 
 
-
 
NC_011757  Mchl_3673  transcriptional regulator, Crp/Fnr family  26.58 
 
 
254 aa  75.1  0.000000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.43296  normal 
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  26.88 
 
 
226 aa  73.9  0.000000000002  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  26.09 
 
 
228 aa  73.9  0.000000000002  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_7045  transcriptional regulator, Crp/Fnr family  27.27 
 
 
237 aa  74.3  0.000000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  0.601598  normal  0.0108856 
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  23.23 
 
 
251 aa  73.9  0.000000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_010424  Daud_1482  CRP/FNR family transcriptional regulator  28.65 
 
 
235 aa  73.9  0.000000000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000000238682  n/a   
 
 
-
 
NC_011830  Dhaf_0303  transcriptional regulator, Crp/Fnr family  30.41 
 
 
228 aa  74.3  0.000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B0606  Crp/FNR family transcriptional regulator  27.37 
 
 
267 aa  73.9  0.000000000002  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.149995 
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  29.78 
 
 
231 aa  73.6  0.000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_014158  Tpau_3932  transcriptional regulator, Crp/Fnr family  26.78 
 
 
224 aa  73.6  0.000000000003  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.571672  n/a   
 
 
-
 
NC_007952  Bxe_B0027  Crp/FNR family transcriptional regulator  26.32 
 
 
237 aa  73.6  0.000000000003  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8903  transcriptional regulator, Crp/Fnr family  25.77 
 
 
224 aa  73.2  0.000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  29.41 
 
 
236 aa  73.2  0.000000000003  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_009380  Strop_3269  CRP/FNR family transcriptional regulator  25.85 
 
 
230 aa  73.2  0.000000000004  Salinispora tropica CNB-440  Bacteria  normal  0.883713  normal 
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  29.41 
 
 
236 aa  73.2  0.000000000004  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_013132  Cpin_0678  transcriptional regulator, Crp/Fnr family  26.15 
 
 
236 aa  72.4  0.000000000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236133  normal 
 
 
-
 
NC_009441  Fjoh_4447  CRP/FNR family transcriptional regulator  22.34 
 
 
227 aa  72.8  0.000000000005  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  24.76 
 
 
225 aa  72.4  0.000000000006  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_011830  Dhaf_3158  transcriptional regulator, Crp/Fnr family  28.49 
 
 
223 aa  72.4  0.000000000006  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1678  transcriptional regulator, Crp/Fnr family  24.86 
 
 
234 aa  72.4  0.000000000006  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_4818  Crp/FNR family transcriptional regulator  26.78 
 
 
224 aa  72.4  0.000000000006  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_5205  Crp/FNR family transcriptional regulator  26.78 
 
 
224 aa  72.4  0.000000000006  Mycobacterium sp. JLS  Bacteria  normal  0.703662  hitchhiker  0.000819508 
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  25.7 
 
 
225 aa  72.4  0.000000000006  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_4881  putative cyclic-AMP receptor-like protein  27.86 
 
 
281 aa  72.4  0.000000000006  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.353478  normal  0.139273 
 
 
-
 
NC_008705  Mkms_4904  Crp/FNR family transcriptional regulator  26.78 
 
 
224 aa  72.4  0.000000000006  Mycobacterium sp. KMS  Bacteria  normal  normal  0.385516 
 
 
-
 
NC_008726  Mvan_5435  CRP/FNR family transcriptional regulator  26.78 
 
 
224 aa  72  0.000000000007  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.397858 
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  27.55 
 
 
231 aa  72  0.000000000008  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_009953  Sare_3499  Crp/FNR family transcriptional regulator  25.95 
 
 
230 aa  72  0.000000000008  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00506626 
 
 
-
 
NC_011830  Dhaf_1853  transcriptional regulator, Crp/Fnr family  26.59 
 
 
240 aa  71.6  0.000000000009  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_13707  Cpr/FNR family transcriptional regulator  26.23 
 
 
224 aa  71.6  0.000000000009  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0333343 
 
 
-
 
NC_008699  Noca_1641  cyclic nucleotide-binding  28 
 
 
267 aa  71.6  0.000000000009  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4660  transcriptional regulator, Crp/Fnr family  29 
 
 
225 aa  71.2  0.00000000001  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  27.78 
 
 
236 aa  71.2  0.00000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1592  transcriptional regulator, Crp/Fnr family  29.26 
 
 
228 aa  71.6  0.00000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012857  Rpic12D_3583  transcriptional regulator, Crp/Fnr family  29 
 
 
225 aa  71.2  0.00000000001  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  26.02 
 
 
229 aa  70.9  0.00000000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_011831  Cagg_0349  transcriptional regulator, Crp/Fnr family  28.79 
 
 
222 aa  71.2  0.00000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.00000192919 
 
 
-
 
NC_013093  Amir_0253  transcriptional regulator, Crp/Fnr family  25.68 
 
 
224 aa  71.2  0.00000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_3191  transcriptional regulator Dnr  24.17 
 
 
227 aa  70.5  0.00000000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  27.59 
 
 
236 aa  70.9  0.00000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_010524  Lcho_0755  Crp/FNR family transcriptional regulator  26.74 
 
 
222 aa  70.5  0.00000000002  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.2571 
 
 
-
 
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