More than 300 homologs were found in PanDaTox collection
for query gene Smed_5927 on replicon NC_009621
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009621  Smed_5927  cyclic nucleotide-binding protein  100 
 
 
226 aa  462  1e-129  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.514964 
 
 
-
 
NC_009636  Smed_2376  CRP/FNR family transcriptional regulator  61.23 
 
 
226 aa  276  2e-73  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.253524 
 
 
-
 
NC_011989  Avi_3466  regulator of Biofilm formation Fnr Family  43.81 
 
 
235 aa  189  2.9999999999999997e-47  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3301  transcriptional regulator, Crp/Fnr family  40.37 
 
 
227 aa  148  6e-35  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.306356 
 
 
-
 
NC_011368  Rleg2_5024  cyclic nucleotide-binding protein  41.55 
 
 
221 aa  141  9.999999999999999e-33  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.923745  normal 
 
 
-
 
NC_012848  Rleg_4954  transcriptional regulator, Crp/Fnr family  38.18 
 
 
223 aa  119  3.9999999999999996e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  hitchhiker  0.00163752  normal 
 
 
-
 
NC_008686  Pden_2478  CRP/FNR family transcriptional regulator  31.77 
 
 
249 aa  94  2e-18  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.651433 
 
 
-
 
NC_009952  Dshi_3189  transcriptional regulator  30.37 
 
 
236 aa  93.6  2e-18  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1522  cyclic nucleotide-binding  27.78 
 
 
241 aa  91.3  1e-17  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.500349  normal  0.967279 
 
 
-
 
NC_008576  Mmc1_0460  Crp/FNR family transcriptional regulator  30.37 
 
 
232 aa  90.9  2e-17  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.884408 
 
 
-
 
NC_007404  Tbd_0079  Crp/FNR family transcriptional regulator  27.11 
 
 
225 aa  90.1  3e-17  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.849443  normal  0.162256 
 
 
-
 
NC_011004  Rpal_0740  transcriptional regulator, Crp/Fnr family  28.7 
 
 
255 aa  89.4  4e-17  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_0407  transcriptional regulator, Crp/Fnr family  30.67 
 
 
243 aa  87.4  2e-16  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  28.44 
 
 
227 aa  86.7  3e-16  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_0857  transcriptional regulator, Crp/Fnr family  28.57 
 
 
229 aa  85.9  4e-16  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0981  transcriptional regulator, Crp/Fnr family  28.57 
 
 
246 aa  85.9  5e-16  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0154476 
 
 
-
 
NC_007925  RPC_1012  Crp/FNR family transcriptional regulator  26.91 
 
 
241 aa  85.9  5e-16  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.88102  normal  0.736744 
 
 
-
 
NC_008347  Mmar10_2709  transcriptional activator FtrB  29.78 
 
 
232 aa  84  0.000000000000002  Maricaulis maris MCS10  Bacteria  normal  normal  0.0829617 
 
 
-
 
NC_009952  Dshi_3191  transcriptional regulator Dnr  25.99 
 
 
227 aa  81.3  0.00000000000001  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_3081  CRP/FNR family transcriptional regulator  26.9 
 
 
249 aa  80.1  0.00000000000003  Marinobacter aquaeolei VT8  Bacteria  normal  0.0390484  n/a   
 
 
-
 
NC_011206  Lferr_1356  transcriptional regulator, Crp/Fnr family  30.81 
 
 
222 aa  78.2  0.00000000000009  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_1658  transcriptional regulator, Crp/Fnr family  30.81 
 
 
222 aa  78.2  0.00000000000009  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.365354  n/a   
 
 
-
 
NC_010571  Oter_2867  Crp/FNR family transcriptional regulator  26.13 
 
 
241 aa  77.8  0.0000000000001  Opitutus terrae PB90-1  Bacteria  normal  0.343371  normal  0.792405 
 
 
-
 
NC_007643  Rru_A2636  Crp/FNR family transcriptional regulator  30.05 
 
 
234 aa  76.6  0.0000000000003  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1660  Crp/FNR family transcriptional regulator  28.5 
 
 
261 aa  76.3  0.0000000000004  Nocardioides sp. JS614  Bacteria  normal  0.74426  n/a   
 
 
-
 
NC_003296  RS02297  transcription regulator protein  30.81 
 
 
225 aa  75.9  0.0000000000005  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.419231 
 
 
-
 
NC_012857  Rpic12D_3583  transcriptional regulator, Crp/Fnr family  27.49 
 
 
225 aa  75.9  0.0000000000005  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4660  transcriptional regulator, Crp/Fnr family  27.49 
 
 
225 aa  75.9  0.0000000000005  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007575  Suden_1312  CRP/FNR family transcriptional regulator  25 
 
 
209 aa  75.5  0.0000000000006  Sulfurimonas denitrificans DSM 1251  Bacteria  decreased coverage  0.000433355  n/a   
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  29.32 
 
 
227 aa  75.1  0.0000000000007  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  28.37 
 
 
228 aa  75.5  0.0000000000007  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  30.81 
 
 
248 aa  75.1  0.0000000000008  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_011992  Dtpsy_3443  transcriptional regulator, Crp/Fnr family  28.57 
 
 
229 aa  74.3  0.000000000001  Acidovorax ebreus TPSY  Bacteria  normal  0.12986  n/a   
 
 
-
 
NC_009953  Sare_4620  Crp/FNR family transcriptional regulator  29.06 
 
 
237 aa  74.3  0.000000000001  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.128051 
 
 
-
 
NC_011662  Tmz1t_2638  transcriptional regulator, Crp/Fnr family  27.87 
 
 
222 aa  73.6  0.000000000002  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  26.34 
 
 
236 aa  73.2  0.000000000003  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_008496  LEUM_A06  Crp-like transcriptional regulator  26.09 
 
 
230 aa  72.8  0.000000000004  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_1939  transcriptional regulator, Crp/Fnr family  29.58 
 
 
235 aa  72.4  0.000000000005  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_0319  Crp/FNR family transcriptional regulator  27.81 
 
 
262 aa  72.4  0.000000000005  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  32.45 
 
 
228 aa  72  0.000000000007  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  25.69 
 
 
227 aa  71.2  0.00000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_012856  Rpic12D_1785  transcriptional regulator, Crp/Fnr family  27.49 
 
 
225 aa  70.9  0.00000000002  Ralstonia pickettii 12D  Bacteria  normal  0.0232074  normal  0.813169 
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  28.49 
 
 
229 aa  70.9  0.00000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_009656  PSPA7_0628  transcriptional regulator Dnr  26.27 
 
 
227 aa  70.1  0.00000000002  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1286  transcriptional regulator, Crp/Fnr family  25.24 
 
 
227 aa  70.9  0.00000000002  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  25.5 
 
 
236 aa  69.7  0.00000000003  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_010338  Caul_3861  transcriptional activator FtrB  30.26 
 
 
256 aa  70.1  0.00000000003  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_2109  transcriptional regulator, Crp/Fnr family  27.01 
 
 
225 aa  69.7  0.00000000004  Ralstonia pickettii 12J  Bacteria  normal  0.170093  normal 
 
 
-
 
NC_010505  Mrad2831_2595  Crp/FNR family transcriptional regulator  28.17 
 
 
251 aa  68.9  0.00000000006  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.396823  normal 
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  25.5 
 
 
236 aa  68.9  0.00000000006  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_011894  Mnod_2132  transcriptional regulator, Crp/Fnr family  29.89 
 
 
293 aa  68.9  0.00000000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.263338  n/a   
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  24.2 
 
 
352 aa  68.9  0.00000000007  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_004311  BRA0301  transcriptional activator FtrB  25.45 
 
 
236 aa  68.6  0.00000000008  Brucella suis 1330  Bacteria  normal  0.025844  n/a   
 
 
-
 
NC_009504  BOV_A0277  transcriptional activator FtrB  25.45 
 
 
236 aa  68.6  0.00000000008  Brucella ovis ATCC 25840  Bacteria  normal  0.739319  n/a   
 
 
-
 
NC_008463  PA14_06870  transcriptional regulator Dnr  25.81 
 
 
227 aa  68.2  0.0000000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.156456  normal 
 
 
-
 
NC_013216  Dtox_2750  transcriptional regulator, Crp/Fnr family  30.71 
 
 
222 aa  67  0.0000000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.0000000354449  normal  0.602467 
 
 
-
 
NC_013512  Sdel_0691  cyclic nucleotide-binding protein  25.7 
 
 
212 aa  67.4  0.0000000002  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  27.1 
 
 
224 aa  67  0.0000000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  30.73 
 
 
231 aa  66.6  0.0000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  23.11 
 
 
236 aa  66.2  0.0000000003  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_007575  Suden_1512  cyclic nucleotide-binding domain-containing protein  22.84 
 
 
221 aa  66.2  0.0000000004  Sulfurimonas denitrificans DSM 1251  Bacteria  hitchhiker  0.00000347396  n/a   
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  29.82 
 
 
222 aa  65.9  0.0000000004  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  26.58 
 
 
224 aa  66.2  0.0000000004  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  27.19 
 
 
220 aa  65.5  0.0000000006  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_011898  Ccel_1678  transcriptional regulator, Crp/Fnr family  24.23 
 
 
234 aa  65.5  0.0000000006  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  22.64 
 
 
236 aa  65.5  0.0000000006  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_010511  M446_6129  Crp/FNR family transcriptional regulator  28.26 
 
 
267 aa  65.5  0.0000000006  Methylobacterium sp. 4-46  Bacteria  normal  0.0255629  normal 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  23.04 
 
 
226 aa  64.7  0.000000001  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0860  Crp/FNR family transcriptional regulator  25.65 
 
 
234 aa  64.7  0.000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.693979  n/a   
 
 
-
 
NC_008309  HS_0878  fumarate/nitrate reduction transcriptional regulator  24.48 
 
 
257 aa  65.1  0.000000001  Haemophilus somnus 129PT  Bacteria  normal  0.0364978  n/a   
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  27.04 
 
 
226 aa  65.1  0.000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_008345  Sfri_2018  fumarate/nitrate reduction transcriptional regulator  25 
 
 
252 aa  65.1  0.000000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.831368  n/a   
 
 
-
 
NC_008576  Mmc1_1531  Crp/FNR family transcriptional regulator  26.56 
 
 
239 aa  64.3  0.000000001  Magnetococcus sp. MC-1  Bacteria  normal  0.169257  normal 
 
 
-
 
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  28.09 
 
 
254 aa  63.9  0.000000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_010730  SYO3AOP1_0465  transcriptional regulator, Crp/Fnr family  24.77 
 
 
223 aa  63.9  0.000000002  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00000000196856  n/a   
 
 
-
 
NC_010571  Oter_0906  Crp/FNR family transcriptional regulator  26.46 
 
 
238 aa  63.9  0.000000002  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1987  fumarate/nitrate reduction transcriptional regulator  24.73 
 
 
239 aa  63.2  0.000000003  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  22.05 
 
 
225 aa  63.2  0.000000003  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  30 
 
 
225 aa  63.2  0.000000003  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_009429  Rsph17025_3610  hypothetical protein  26.23 
 
 
231 aa  63.2  0.000000003  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  28.05 
 
 
225 aa  63.5  0.000000003  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_2889  transcriptional activator FtrB  24.89 
 
 
239 aa  62.8  0.000000004  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.22661  n/a   
 
 
-
 
CP001637  EcDH1_2311  transcriptional regulator, Crp/Fnr family  25 
 
 
250 aa  62  0.000000006  Escherichia coli DH1  Bacteria  normal  0.144598  n/a   
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  24.76 
 
 
251 aa  62.4  0.000000006  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  25 
 
 
250 aa  62  0.000000006  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2291  fumarate/nitrate reduction transcriptional regulator  25 
 
 
250 aa  62  0.000000006  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  25 
 
 
250 aa  62  0.000000006  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
NC_009801  EcE24377A_1546  fumarate/nitrate reduction transcriptional regulator  25 
 
 
250 aa  62  0.000000006  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E1575  fumarate/nitrate reduction transcriptional regulator  25 
 
 
250 aa  62  0.000000006  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1802  transcriptional regulator, Crp/Fnr family  23.38 
 
 
238 aa  62  0.000000007  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1843  fumarate/nitrate reduction transcriptional regulator  26.04 
 
 
250 aa  62  0.000000007  Shewanella denitrificans OS217  Bacteria  normal  0.0177159  n/a   
 
 
-
 
NC_011080  SNSL254_A1783  fumarate/nitrate reduction transcriptional regulator  25 
 
 
250 aa  61.6  0.000000008  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.251439 
 
 
-
 
NC_011094  SeSA_A1785  fumarate/nitrate reduction transcriptional regulator  25 
 
 
250 aa  61.6  0.000000008  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.377507  normal  0.141635 
 
 
-
 
NC_011205  SeD_A1673  fumarate/nitrate reduction transcriptional regulator  25 
 
 
250 aa  61.6  0.000000008  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.349784  normal  0.0983377 
 
 
-
 
NC_011083  SeHA_C1845  fumarate/nitrate reduction transcriptional regulator  25 
 
 
250 aa  61.6  0.000000008  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.918423  normal 
 
 
-
 
NC_011149  SeAg_B1491  fumarate/nitrate reduction transcriptional regulator  25 
 
 
250 aa  61.6  0.000000008  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0202312  n/a   
 
 
-
 
NC_008740  Maqu_3550  cAMP-regulatory protein  23.91 
 
 
217 aa  62  0.000000008  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1669  Crp/FNR family transcriptional regulator  22.97 
 
 
233 aa  61.6  0.000000009  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_3444  cyclic nucleotide-binding  23.9 
 
 
250 aa  61.6  0.000000009  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0787  transcriptional regulator, Crp/Fnr family  27.18 
 
 
243 aa  61.6  0.000000009  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
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