More than 300 homologs were found in PanDaTox collection
for query gene Rleg_3301 on replicon NC_012850
Organism: Rhizobium leguminosarum bv. trifolii WSM1325



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012850  Rleg_3301  transcriptional regulator, Crp/Fnr family  100 
 
 
227 aa  464  9.999999999999999e-131  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.306356 
 
 
-
 
NC_011989  Avi_3466  regulator of Biofilm formation Fnr Family  54.19 
 
 
235 aa  244  9e-64  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_4954  transcriptional regulator, Crp/Fnr family  41.2 
 
 
223 aa  174  9.999999999999999e-43  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  hitchhiker  0.00163752  normal 
 
 
-
 
NC_011368  Rleg2_5024  cyclic nucleotide-binding protein  40.93 
 
 
221 aa  170  2e-41  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.923745  normal 
 
 
-
 
NC_009636  Smed_2376  CRP/FNR family transcriptional regulator  42.2 
 
 
226 aa  155  6e-37  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.253524 
 
 
-
 
NC_009621  Smed_5927  cyclic nucleotide-binding protein  39.91 
 
 
226 aa  142  4e-33  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.514964 
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  31.43 
 
 
227 aa  103  2e-21  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1522  cyclic nucleotide-binding  29.6 
 
 
241 aa  101  1e-20  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.500349  normal  0.967279 
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  29.44 
 
 
227 aa  100  1e-20  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_007925  RPC_1012  Crp/FNR family transcriptional regulator  29.6 
 
 
241 aa  98.2  8e-20  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.88102  normal  0.736744 
 
 
-
 
NC_007404  Tbd_0079  Crp/FNR family transcriptional regulator  29.46 
 
 
225 aa  97.8  1e-19  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.849443  normal  0.162256 
 
 
-
 
NC_009952  Dshi_3189  transcriptional regulator  30.21 
 
 
236 aa  97.8  1e-19  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0740  transcriptional regulator, Crp/Fnr family  30.04 
 
 
255 aa  97.4  1e-19  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  28.04 
 
 
236 aa  94.4  1e-18  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  28.71 
 
 
248 aa  93.2  3e-18  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_007643  Rru_A2636  Crp/FNR family transcriptional regulator  31.88 
 
 
234 aa  90.1  2e-17  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4660  transcriptional regulator, Crp/Fnr family  32.49 
 
 
225 aa  89.4  4e-17  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_3583  transcriptional regulator, Crp/Fnr family  32.49 
 
 
225 aa  89.4  4e-17  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_3444  cyclic nucleotide-binding  31.53 
 
 
250 aa  87.4  1e-16  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_2478  CRP/FNR family transcriptional regulator  27.49 
 
 
249 aa  88.2  1e-16  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.651433 
 
 
-
 
NC_009953  Sare_4620  Crp/FNR family transcriptional regulator  34.41 
 
 
237 aa  87.8  1e-16  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.128051 
 
 
-
 
NC_008576  Mmc1_0460  Crp/FNR family transcriptional regulator  30.17 
 
 
232 aa  87  2e-16  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.884408 
 
 
-
 
NC_009092  Shew_3331  Crp/FNR family transcriptional regulator  33.15 
 
 
258 aa  86.7  3e-16  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  29.3 
 
 
229 aa  86.7  3e-16  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_013510  Tcur_0407  transcriptional regulator, Crp/Fnr family  27.91 
 
 
243 aa  86.7  3e-16  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  28.84 
 
 
226 aa  86.3  4e-16  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_008347  Mmar10_2709  transcriptional activator FtrB  29.59 
 
 
232 aa  85.9  4e-16  Maricaulis maris MCS10  Bacteria  normal  normal  0.0829617 
 
 
-
 
NC_011761  AFE_0857  transcriptional regulator, Crp/Fnr family  32.43 
 
 
229 aa  85.9  5e-16  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0981  transcriptional regulator, Crp/Fnr family  32.43 
 
 
246 aa  85.5  6e-16  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0154476 
 
 
-
 
NC_011662  Tmz1t_1286  transcriptional regulator, Crp/Fnr family  29.38 
 
 
227 aa  85.5  7e-16  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  27.57 
 
 
227 aa  85.1  7e-16  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  28.77 
 
 
227 aa  85.1  8e-16  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  30.1 
 
 
231 aa  84.7  9e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_010571  Oter_0906  Crp/FNR family transcriptional regulator  28.11 
 
 
238 aa  84.3  0.000000000000001  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  28.77 
 
 
227 aa  84.3  0.000000000000001  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  29.41 
 
 
229 aa  84  0.000000000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  29.95 
 
 
230 aa  84  0.000000000000002  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_008825  Mpe_A1691  CRP/FNR family transcriptional regulator  28.37 
 
 
232 aa  84  0.000000000000002  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00272653  normal  0.637065 
 
 
-
 
NC_008700  Sama_2685  cAMP-binding protein  30.94 
 
 
272 aa  82.8  0.000000000000004  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_3081  CRP/FNR family transcriptional regulator  30.94 
 
 
249 aa  82.4  0.000000000000005  Marinobacter aquaeolei VT8  Bacteria  normal  0.0390484  n/a   
 
 
-
 
NC_003296  RS02297  transcription regulator protein  31.34 
 
 
225 aa  82.4  0.000000000000006  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.419231 
 
 
-
 
NC_010571  Oter_2867  Crp/FNR family transcriptional regulator  27.32 
 
 
241 aa  82  0.000000000000006  Opitutus terrae PB90-1  Bacteria  normal  0.343371  normal  0.792405 
 
 
-
 
NC_007908  Rfer_0060  Crp/FNR family transcriptional regulator  30.5 
 
 
234 aa  82  0.000000000000007  Rhodoferax ferrireducens T118  Bacteria  normal  0.237094  n/a   
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  28.57 
 
 
229 aa  82  0.000000000000007  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  29.95 
 
 
241 aa  81.6  0.000000000000009  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2895  cyclic nucleotide-binding domain-containing protein  29.44 
 
 
230 aa  81.6  0.000000000000009  Burkholderia mallei NCTC 10229  Bacteria  normal  0.869141  n/a   
 
 
-
 
NC_009076  BURPS1106A_2752  cyclic nucleotide-binding protein  29.44 
 
 
230 aa  81.6  0.000000000000009  Burkholderia pseudomallei 1106a  Bacteria  normal  0.339389  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2392  cyclic nucleotide-binding domain-containing protein  29.44 
 
 
230 aa  81.6  0.000000000000009  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1706  cyclic nucleotide-binding protein  29.44 
 
 
230 aa  81.6  0.000000000000009  Burkholderia mallei NCTC 10247  Bacteria  normal  0.450772  n/a   
 
 
-
 
NC_004311  BRA0301  transcriptional activator FtrB  28.09 
 
 
236 aa  80.9  0.00000000000001  Brucella suis 1330  Bacteria  normal  0.025844  n/a   
 
 
-
 
NC_006348  BMA0619  cyclic nucleotide-binding domain-containing protein  29.44 
 
 
229 aa  81.6  0.00000000000001  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_1658  transcriptional regulator, Crp/Fnr family  34.05 
 
 
222 aa  81.3  0.00000000000001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.365354  n/a   
 
 
-
 
NC_011206  Lferr_1356  transcriptional regulator, Crp/Fnr family  34.05 
 
 
222 aa  81.3  0.00000000000001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_007434  BURPS1710b_2817  cyclic nucleotide-binding domain-containing protein  29.44 
 
 
229 aa  81.6  0.00000000000001  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0277  transcriptional activator FtrB  28.09 
 
 
236 aa  80.9  0.00000000000001  Brucella ovis ATCC 25840  Bacteria  normal  0.739319  n/a   
 
 
-
 
NC_009074  BURPS668_2695  cyclic nucleotide-binding protein  29.44 
 
 
229 aa  81.6  0.00000000000001  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1801  cyclic nucleotide-binding domain-containing protein  29.44 
 
 
229 aa  80.9  0.00000000000002  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1785  transcriptional regulator, Crp/Fnr family  30.98 
 
 
225 aa  80.5  0.00000000000002  Ralstonia pickettii 12D  Bacteria  normal  0.0232074  normal  0.813169 
 
 
-
 
NC_010682  Rpic_2109  transcriptional regulator, Crp/Fnr family  30.98 
 
 
225 aa  80.5  0.00000000000002  Ralstonia pickettii 12J  Bacteria  normal  0.170093  normal 
 
 
-
 
NC_007498  Pcar_1491  Crp/FNR family transcriptional regulator  28.71 
 
 
224 aa  79.7  0.00000000000003  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000413534  n/a   
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  30.14 
 
 
228 aa  79.3  0.00000000000005  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  28.36 
 
 
228 aa  78.6  0.00000000000007  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_009952  Dshi_3191  transcriptional regulator Dnr  24.53 
 
 
227 aa  78.2  0.00000000000009  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_2889  transcriptional activator FtrB  27.17 
 
 
239 aa  77  0.0000000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.22661  n/a   
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  28.77 
 
 
228 aa  76.6  0.0000000000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  27.31 
 
 
226 aa  75.9  0.0000000000005  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_010505  Mrad2831_2595  Crp/FNR family transcriptional regulator  25.71 
 
 
251 aa  75.9  0.0000000000005  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.396823  normal 
 
 
-
 
NC_007498  Pcar_2562  cyclic AMP receptor protein  29.71 
 
 
222 aa  75.5  0.0000000000007  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.553837  n/a   
 
 
-
 
NC_012803  Mlut_09560  cAMP-binding protein  31.28 
 
 
231 aa  75.1  0.0000000000008  Micrococcus luteus NCTC 2665  Bacteria  normal  0.348668  n/a   
 
 
-
 
NC_011894  Mnod_2132  transcriptional regulator, Crp/Fnr family  25.76 
 
 
293 aa  75.1  0.0000000000009  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.263338  n/a   
 
 
-
 
NC_008576  Mmc1_1531  Crp/FNR family transcriptional regulator  30.32 
 
 
239 aa  75.1  0.0000000000009  Magnetococcus sp. MC-1  Bacteria  normal  0.169257  normal 
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  28.97 
 
 
224 aa  75.1  0.0000000000009  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  27.98 
 
 
228 aa  74.7  0.000000000001  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  28.64 
 
 
225 aa  74.3  0.000000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  25.48 
 
 
240 aa  74.3  0.000000000001  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_008496  LEUM_A06  Crp-like transcriptional regulator  27.17 
 
 
230 aa  74.3  0.000000000001  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  26.32 
 
 
236 aa  73.9  0.000000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  28.7 
 
 
225 aa  73.9  0.000000000002  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_20120  cAMP-binding protein  26.51 
 
 
223 aa  73.2  0.000000000003  Kytococcus sedentarius DSM 20547  Bacteria  hitchhiker  0.00290987  normal  0.0142715 
 
 
-
 
NC_008025  Dgeo_0106  Crp/FNR family transcriptional regulator  25.93 
 
 
254 aa  73.2  0.000000000003  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  28.64 
 
 
231 aa  73.2  0.000000000003  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  25.96 
 
 
231 aa  72.8  0.000000000004  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  25.47 
 
 
243 aa  72.8  0.000000000004  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  25.96 
 
 
231 aa  72.8  0.000000000004  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  21.17 
 
 
226 aa  72.4  0.000000000005  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1619  cyclic nucleotide-binding  29.47 
 
 
235 aa  72.4  0.000000000006  Nocardioides sp. JS614  Bacteria  normal  0.146026  n/a   
 
 
-
 
NC_009523  RoseRS_0595  CRP/FNR family transcriptional regulator  27.44 
 
 
228 aa  72  0.000000000007  Roseiflexus sp. RS-1  Bacteria  normal  0.130469  unclonable  0.00000708114 
 
 
-
 
NC_009668  Oant_4381  CRP/FNR family transcriptional regulator  25 
 
 
231 aa  72  0.000000000007  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  26.44 
 
 
231 aa  71.6  0.000000000009  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  29.59 
 
 
222 aa  71.2  0.00000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_2606  transcriptional regulator, Crp/Fnr family  31.41 
 
 
253 aa  71.6  0.00000000001  Thauera sp. MZ1T  Bacteria  normal  0.193309  n/a   
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  27.83 
 
 
225 aa  71.2  0.00000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_2638  transcriptional regulator, Crp/Fnr family  30.77 
 
 
222 aa  71.2  0.00000000001  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0528  transcriptional regulator, Crp/Fnr family  28.65 
 
 
244 aa  70.5  0.00000000002  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1669  Crp/FNR family transcriptional regulator  25.86 
 
 
233 aa  70.5  0.00000000002  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  26.82 
 
 
229 aa  70.5  0.00000000002  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
NC_009719  Plav_2039  CRP/FNR family transcriptional regulator  30 
 
 
242 aa  69.7  0.00000000003  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191538  hitchhiker  0.00387918 
 
 
-
 
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  28.31 
 
 
254 aa  70.1  0.00000000003  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_010338  Caul_3861  transcriptional activator FtrB  27.17 
 
 
256 aa  70.1  0.00000000003  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_009505  BOV_0647  nitrogen fixation regulation protein fixk  30.35 
 
 
251 aa  69.7  0.00000000003  Brucella ovis ATCC 25840  Bacteria  normal  0.774151  n/a   
 
 
-
 
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