More than 300 homologs were found in PanDaTox collection
for query gene Dshi_3189 on replicon NC_009952
Organism: Dinoroseobacter shibae DFL 12



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009952  Dshi_3189  transcriptional regulator  100 
 
 
236 aa  487  1e-137  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_2478  CRP/FNR family transcriptional regulator  47.89 
 
 
249 aa  200  1.9999999999999998e-50  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.651433 
 
 
-
 
NC_009952  Dshi_3191  transcriptional regulator Dnr  43.05 
 
 
227 aa  184  1.0000000000000001e-45  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0740  transcriptional regulator, Crp/Fnr family  43.75 
 
 
255 aa  175  5e-43  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1012  Crp/FNR family transcriptional regulator  45.95 
 
 
241 aa  173  1.9999999999999998e-42  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.88102  normal  0.736744 
 
 
-
 
NC_007958  RPD_1522  cyclic nucleotide-binding  42.45 
 
 
241 aa  172  2.9999999999999996e-42  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.500349  normal  0.967279 
 
 
-
 
NC_008576  Mmc1_0460  Crp/FNR family transcriptional regulator  31.55 
 
 
232 aa  120  1.9999999999999998e-26  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.884408 
 
 
-
 
NC_011206  Lferr_1356  transcriptional regulator, Crp/Fnr family  32.86 
 
 
222 aa  118  9e-26  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_1658  transcriptional regulator, Crp/Fnr family  32.86 
 
 
222 aa  118  9e-26  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.365354  n/a   
 
 
-
 
NC_007404  Tbd_0079  Crp/FNR family transcriptional regulator  34.2 
 
 
225 aa  115  6.9999999999999995e-25  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.849443  normal  0.162256 
 
 
-
 
NC_011989  Avi_3466  regulator of Biofilm formation Fnr Family  30.1 
 
 
235 aa  114  2.0000000000000002e-24  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2636  Crp/FNR family transcriptional regulator  38.46 
 
 
234 aa  112  4.0000000000000004e-24  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1286  transcriptional regulator, Crp/Fnr family  37.43 
 
 
227 aa  108  8.000000000000001e-23  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  34.73 
 
 
248 aa  106  3e-22  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_008576  Mmc1_1531  Crp/FNR family transcriptional regulator  30.45 
 
 
239 aa  106  4e-22  Magnetococcus sp. MC-1  Bacteria  normal  0.169257  normal 
 
 
-
 
NC_011206  Lferr_0981  transcriptional regulator, Crp/Fnr family  29.52 
 
 
246 aa  104  1e-21  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0154476 
 
 
-
 
NC_009636  Smed_2376  CRP/FNR family transcriptional regulator  28.91 
 
 
226 aa  103  2e-21  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.253524 
 
 
-
 
NC_011761  AFE_0857  transcriptional regulator, Crp/Fnr family  29.52 
 
 
229 aa  104  2e-21  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_0628  transcriptional regulator Dnr  30.96 
 
 
227 aa  102  4e-21  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_2606  transcriptional regulator, Crp/Fnr family  34.86 
 
 
253 aa  102  5e-21  Thauera sp. MZ1T  Bacteria  normal  0.193309  n/a   
 
 
-
 
NC_008463  PA14_06870  transcriptional regulator Dnr  30.96 
 
 
227 aa  102  5e-21  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.156456  normal 
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  29.05 
 
 
228 aa  101  1e-20  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_007908  Rfer_0060  Crp/FNR family transcriptional regulator  31.6 
 
 
234 aa  100  2e-20  Rhodoferax ferrireducens T118  Bacteria  normal  0.237094  n/a   
 
 
-
 
NC_013510  Tcur_0407  transcriptional regulator, Crp/Fnr family  33.52 
 
 
243 aa  99  5e-20  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3301  transcriptional regulator, Crp/Fnr family  30.21 
 
 
227 aa  97.8  1e-19  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.306356 
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  29.89 
 
 
231 aa  97.1  2e-19  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  30.81 
 
 
229 aa  97.4  2e-19  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_009953  Sare_4620  Crp/FNR family transcriptional regulator  31.88 
 
 
237 aa  96.3  3e-19  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.128051 
 
 
-
 
NC_009092  Shew_3331  Crp/FNR family transcriptional regulator  32.12 
 
 
258 aa  96.3  4e-19  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_0906  Crp/FNR family transcriptional regulator  30.37 
 
 
238 aa  94.4  2e-18  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I1801  cyclic nucleotide-binding domain-containing protein  33.51 
 
 
229 aa  94  2e-18  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A1691  CRP/FNR family transcriptional regulator  30.84 
 
 
232 aa  94.4  2e-18  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00272653  normal  0.637065 
 
 
-
 
NC_006348  BMA0619  cyclic nucleotide-binding domain-containing protein  32.97 
 
 
229 aa  93.2  3e-18  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2817  cyclic nucleotide-binding domain-containing protein  32.97 
 
 
229 aa  93.2  3e-18  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  26.94 
 
 
229 aa  93.2  3e-18  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_3444  cyclic nucleotide-binding  27.78 
 
 
250 aa  93.2  3e-18  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2895  cyclic nucleotide-binding domain-containing protein  32.97 
 
 
230 aa  93.2  3e-18  Burkholderia mallei NCTC 10229  Bacteria  normal  0.869141  n/a   
 
 
-
 
NC_009080  BMA10247_1706  cyclic nucleotide-binding protein  32.97 
 
 
230 aa  93.2  3e-18  Burkholderia mallei NCTC 10247  Bacteria  normal  0.450772  n/a   
 
 
-
 
NC_009074  BURPS668_2695  cyclic nucleotide-binding protein  32.97 
 
 
229 aa  93.2  3e-18  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_2752  cyclic nucleotide-binding protein  32.97 
 
 
230 aa  93.2  3e-18  Burkholderia pseudomallei 1106a  Bacteria  normal  0.339389  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2392  cyclic nucleotide-binding domain-containing protein  32.97 
 
 
230 aa  93.2  3e-18  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_2867  Crp/FNR family transcriptional regulator  28.89 
 
 
241 aa  93.2  3e-18  Opitutus terrae PB90-1  Bacteria  normal  0.343371  normal  0.792405 
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  24.42 
 
 
227 aa  92.4  6e-18  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_011126  HY04AAS1_0349  transcriptional regulator, Crp/Fnr family  26.46 
 
 
219 aa  92.4  6e-18  Hydrogenobaculum sp. Y04AAS1  Bacteria  hitchhiker  0.000181532  n/a   
 
 
-
 
NC_004311  BRA0301  transcriptional activator FtrB  30.05 
 
 
236 aa  92.4  6e-18  Brucella suis 1330  Bacteria  normal  0.025844  n/a   
 
 
-
 
NC_009504  BOV_A0277  transcriptional activator FtrB  30.05 
 
 
236 aa  92.4  6e-18  Brucella ovis ATCC 25840  Bacteria  normal  0.739319  n/a   
 
 
-
 
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  29.94 
 
 
254 aa  92  7e-18  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  27.52 
 
 
230 aa  92  7e-18  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_007498  Pcar_1491  Crp/FNR family transcriptional regulator  26.7 
 
 
224 aa  92  8e-18  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000413534  n/a   
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  30.12 
 
 
228 aa  91.7  8e-18  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_007298  Daro_3198  Crp/FNR family transcriptional regulator  29.32 
 
 
231 aa  91.7  1e-17  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  26.51 
 
 
227 aa  90.9  1e-17  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  26.51 
 
 
227 aa  91.3  1e-17  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_009668  Oant_2889  transcriptional activator FtrB  29.19 
 
 
239 aa  90.5  2e-17  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.22661  n/a   
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  27.18 
 
 
236 aa  89.7  3e-17  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_1709  transcriptional regulator, Crp/Fnr family  28.17 
 
 
254 aa  89  6e-17  Acidovorax ebreus TPSY  Bacteria  normal  0.0525745  n/a   
 
 
-
 
NC_008782  Ajs_1904  CRP/FNR family transcriptional regulator  28.17 
 
 
254 aa  89  6e-17  Acidovorax sp. JS42  Bacteria  normal  0.0603838  normal  0.510939 
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  24.63 
 
 
226 aa  87.8  1e-16  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_007643  Rru_A2635  Crp/FNR family transcriptional regulator  31.12 
 
 
252 aa  87.8  2e-16  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.545323  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0465  transcriptional regulator, Crp/Fnr family  28.64 
 
 
223 aa  87.4  2e-16  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00000000196856  n/a   
 
 
-
 
NC_012857  Rpic12D_3583  transcriptional regulator, Crp/Fnr family  27.14 
 
 
225 aa  87.4  2e-16  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  25.45 
 
 
227 aa  87.4  2e-16  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_010678  Rpic_4660  transcriptional regulator, Crp/Fnr family  27.14 
 
 
225 aa  87.4  2e-16  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  27.72 
 
 
229 aa  86.7  3e-16  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_010524  Lcho_1454  Crp/FNR family transcriptional regulator  29.72 
 
 
252 aa  86.3  4e-16  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009621  Smed_5927  cyclic nucleotide-binding protein  28.64 
 
 
226 aa  86.3  4e-16  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.514964 
 
 
-
 
NC_008347  Mmar10_2709  transcriptional activator FtrB  28.23 
 
 
232 aa  85.5  6e-16  Maricaulis maris MCS10  Bacteria  normal  normal  0.0829617 
 
 
-
 
NC_011898  Ccel_1678  transcriptional regulator, Crp/Fnr family  25 
 
 
234 aa  85.1  8e-16  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  25.12 
 
 
241 aa  85.1  8e-16  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  26.29 
 
 
239 aa  85.1  8e-16  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  27.45 
 
 
232 aa  84.3  0.000000000000001  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_011662  Tmz1t_4014  transcriptional regulator, Crp/Fnr family  29.94 
 
 
233 aa  84  0.000000000000002  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1669  Crp/FNR family transcriptional regulator  27.27 
 
 
233 aa  83.2  0.000000000000003  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_3443  transcriptional regulator, Crp/Fnr family  28.65 
 
 
229 aa  83.2  0.000000000000003  Acidovorax ebreus TPSY  Bacteria  normal  0.12986  n/a   
 
 
-
 
NC_008700  Sama_2685  cAMP-binding protein  28.92 
 
 
272 aa  83.2  0.000000000000003  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  29.78 
 
 
227 aa  82.8  0.000000000000004  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_2472  transcriptional regulator, Crp/Fnr family  25 
 
 
238 aa  83.2  0.000000000000004  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.3707  n/a   
 
 
-
 
NC_012848  Rleg_4954  transcriptional regulator, Crp/Fnr family  26.67 
 
 
223 aa  83.2  0.000000000000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  hitchhiker  0.00163752  normal 
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  27.96 
 
 
262 aa  82  0.000000000000008  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_011729  PCC7424_3735  transcriptional regulator, Crp/Fnr family  32.78 
 
 
210 aa  82  0.000000000000008  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  26.26 
 
 
229 aa  81.6  0.000000000000009  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
NC_007298  Daro_1036  cyclic nucleotide-binding  28.57 
 
 
245 aa  81.3  0.00000000000001  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  30 
 
 
231 aa  80.5  0.00000000000002  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_009767  Rcas_3427  Crp/FNR family transcriptional regulator  26.11 
 
 
223 aa  80.1  0.00000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0598833  hitchhiker  0.00496827 
 
 
-
 
NC_011368  Rleg2_5024  cyclic nucleotide-binding protein  31.32 
 
 
221 aa  79.7  0.00000000000004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.923745  normal 
 
 
-
 
NC_008496  LEUM_A06  Crp-like transcriptional regulator  24.31 
 
 
230 aa  79.3  0.00000000000004  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1465  Crp/FNR family transcriptional regulator  27.84 
 
 
236 aa  79.3  0.00000000000005  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.342125  normal  0.439299 
 
 
-
 
NC_007348  Reut_B5062  cyclic nucleotide-binding  29.8 
 
 
254 aa  79  0.00000000000006  Ralstonia eutropha JMP134  Bacteria  normal  0.319018  n/a   
 
 
-
 
NC_012856  Rpic12D_1785  transcriptional regulator, Crp/Fnr family  27.46 
 
 
225 aa  79  0.00000000000007  Ralstonia pickettii 12D  Bacteria  normal  0.0232074  normal  0.813169 
 
 
-
 
NC_014151  Cfla_0719  transcriptional regulator, Crp/Fnr family  27.43 
 
 
257 aa  79  0.00000000000007  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000204419 
 
 
-
 
NC_011830  Dhaf_3071  transcriptional regulator, Crp/Fnr family  25.35 
 
 
224 aa  78.6  0.00000000000009  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00222127  n/a   
 
 
-
 
NC_011992  Dtpsy_2689  transcriptional regulator, Crp/Fnr family  28.42 
 
 
246 aa  78.2  0.0000000000001  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  25.35 
 
 
243 aa  77.8  0.0000000000001  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  25.35 
 
 
226 aa  78.2  0.0000000000001  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1660  Crp/FNR family transcriptional regulator  29.78 
 
 
261 aa  78.2  0.0000000000001  Nocardioides sp. JS614  Bacteria  normal  0.74426  n/a   
 
 
-
 
NC_008782  Ajs_3341  Crp/FNR family transcriptional regulator  27.89 
 
 
221 aa  77.4  0.0000000000002  Acidovorax sp. JS42  Bacteria  normal  normal  0.0836398 
 
 
-
 
NC_010682  Rpic_2109  transcriptional regulator, Crp/Fnr family  27.46 
 
 
225 aa  77.4  0.0000000000002  Ralstonia pickettii 12J  Bacteria  normal  0.170093  normal 
 
 
-
 
NC_013421  Pecwa_2778  transcriptional regulator, Crp/Fnr family  24.76 
 
 
238 aa  77  0.0000000000002  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0529131  n/a   
 
 
-
 
NC_008025  Dgeo_0106  Crp/FNR family transcriptional regulator  24 
 
 
254 aa  76.6  0.0000000000003  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  23.16 
 
 
225 aa  76.6  0.0000000000003  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>