More than 300 homologs were found in PanDaTox collection
for query gene PC1_2472 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012917  PC1_2472  transcriptional regulator, Crp/Fnr family  100 
 
 
238 aa  496  1e-140  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.3707  n/a   
 
 
-
 
NC_013421  Pecwa_2778  transcriptional regulator, Crp/Fnr family  96.22 
 
 
238 aa  478  1e-134  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0529131  n/a   
 
 
-
 
NC_008782  Ajs_3341  Crp/FNR family transcriptional regulator  39.81 
 
 
221 aa  144  1e-33  Acidovorax sp. JS42  Bacteria  normal  normal  0.0836398 
 
 
-
 
NC_011992  Dtpsy_2689  transcriptional regulator, Crp/Fnr family  38.33 
 
 
246 aa  143  2e-33  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  35.9 
 
 
254 aa  127  1.0000000000000001e-28  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  32.13 
 
 
227 aa  110  1.0000000000000001e-23  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  32.8 
 
 
231 aa  103  2e-21  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  33.5 
 
 
229 aa  100  2e-20  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  30 
 
 
227 aa  99.4  4e-20  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  30.23 
 
 
228 aa  99.8  4e-20  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  30.64 
 
 
236 aa  99  6e-20  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  29.41 
 
 
226 aa  96.3  4e-19  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_007498  Pcar_1491  Crp/FNR family transcriptional regulator  32.26 
 
 
224 aa  94.7  1e-18  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000413534  n/a   
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  31.75 
 
 
241 aa  94.4  2e-18  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  33.51 
 
 
248 aa  93.2  3e-18  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  29.91 
 
 
229 aa  92.8  4e-18  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  29.65 
 
 
230 aa  92.4  5e-18  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_008576  Mmc1_1531  Crp/FNR family transcriptional regulator  26.15 
 
 
239 aa  92  8e-18  Magnetococcus sp. MC-1  Bacteria  normal  0.169257  normal 
 
 
-
 
NC_011898  Ccel_1678  transcriptional regulator, Crp/Fnr family  26.29 
 
 
234 aa  91.3  1e-17  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  29.91 
 
 
227 aa  90.5  2e-17  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  28.63 
 
 
227 aa  90.1  3e-17  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011761  AFE_0857  transcriptional regulator, Crp/Fnr family  28.79 
 
 
229 aa  89.4  4e-17  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0981  transcriptional regulator, Crp/Fnr family  28.79 
 
 
246 aa  89.4  5e-17  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0154476 
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  30.61 
 
 
229 aa  88.6  8e-17  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  29.73 
 
 
229 aa  87.4  2e-16  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  32.07 
 
 
228 aa  87  2e-16  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  28.57 
 
 
352 aa  86.7  3e-16  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_008340  Mlg_0319  Crp/FNR family transcriptional regulator  30.37 
 
 
262 aa  86.3  4e-16  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  28.96 
 
 
222 aa  84.7  0.000000000000001  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  25.91 
 
 
225 aa  84.7  0.000000000000001  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0460  Crp/FNR family transcriptional regulator  28.06 
 
 
232 aa  84.7  0.000000000000001  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.884408 
 
 
-
 
NC_007404  Tbd_0079  Crp/FNR family transcriptional regulator  27.39 
 
 
225 aa  84  0.000000000000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.849443  normal  0.162256 
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  23.76 
 
 
236 aa  84.3  0.000000000000002  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_009952  Dshi_3189  transcriptional regulator  25 
 
 
236 aa  83.2  0.000000000000004  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  23.76 
 
 
236 aa  83.2  0.000000000000004  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  30.24 
 
 
234 aa  82.8  0.000000000000005  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  24.86 
 
 
232 aa  81.6  0.000000000000009  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_011831  Cagg_1798  transcriptional regulator, Crp/Fnr family  24.88 
 
 
224 aa  81.6  0.00000000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.112724  normal  0.701218 
 
 
-
 
NC_011004  Rpal_0740  transcriptional regulator, Crp/Fnr family  23.87 
 
 
255 aa  80.1  0.00000000000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_1297  Crp/FNR family transcriptional regulator  26.32 
 
 
222 aa  80.1  0.00000000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  25.13 
 
 
239 aa  78.6  0.00000000000007  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_009656  PSPA7_3788  transcriptional regulator Anr  26.15 
 
 
244 aa  77.8  0.0000000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  0.620164  n/a   
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  25.25 
 
 
227 aa  78.2  0.0000000000001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_44490  transcriptional regulator Anr  26.15 
 
 
244 aa  77.8  0.0000000000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.793348 
 
 
-
 
NC_009953  Sare_4620  Crp/FNR family transcriptional regulator  28.21 
 
 
237 aa  76.6  0.0000000000003  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.128051 
 
 
-
 
NC_007974  Rmet_4521  Crp/Fnr family transcriptional regulator  26.46 
 
 
257 aa  76.6  0.0000000000003  Cupriavidus metallidurans CH34  Bacteria  normal  0.0161618  normal  0.0108643 
 
 
-
 
NC_008528  OEOE_0355  Crp-like transcriptional regulator  28.11 
 
 
221 aa  76.6  0.0000000000003  Oenococcus oeni PSU-1  Bacteria  normal  0.128458  n/a   
 
 
-
 
NC_010571  Oter_0906  Crp/FNR family transcriptional regulator  27.62 
 
 
238 aa  76.3  0.0000000000004  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2615  CRP/FNR family transcriptional regulator  25.47 
 
 
244 aa  75.5  0.0000000000006  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00240538  normal  0.855877 
 
 
-
 
NC_008228  Patl_2699  Crp/FNR family transcriptional regulator  27.94 
 
 
232 aa  75.1  0.0000000000008  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.276502  n/a   
 
 
-
 
NC_008261  CPF_2845  cyclic nucleotide-binding domain-containing protein  23.66 
 
 
226 aa  74.3  0.000000000001  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0465  transcriptional regulator, Crp/Fnr family  26.34 
 
 
223 aa  74.3  0.000000000001  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00000000196856  n/a   
 
 
-
 
NC_009075  BURPS668_A0051  cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases  25.7 
 
 
251 aa  73.9  0.000000000002  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1184  Crp/FNR family transcriptional regulator  25.7 
 
 
251 aa  74.3  0.000000000002  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2233  CRP/FNR family transcriptional regulator  22.84 
 
 
253 aa  73.6  0.000000000002  Marinomonas sp. MWYL1  Bacteria  normal  0.0375344  normal  0.791743 
 
 
-
 
NC_006349  BMAA0031  Crp/FNR family transcriptional regulator  25.7 
 
 
251 aa  74.3  0.000000000002  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0037  Crp/FNR family transcriptional regulator  25.7 
 
 
251 aa  73.9  0.000000000002  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0037  Crp/FNR family transcriptional regulator  25.7 
 
 
251 aa  74.3  0.000000000002  Burkholderia mallei NCTC 10247  Bacteria  normal  0.284481  n/a   
 
 
-
 
NC_010557  BamMC406_6195  Crp/FNR family transcriptional regulator  24.77 
 
 
257 aa  73.9  0.000000000002  Burkholderia ambifaria MC40-6  Bacteria  normal  0.107166  normal  0.295507 
 
 
-
 
NC_007650  BTH_II0035  Crp/FNR family transcriptional regulator  25.7 
 
 
251 aa  73.9  0.000000000002  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  22.56 
 
 
236 aa  73.9  0.000000000002  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  22.56 
 
 
236 aa  73.9  0.000000000002  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_008262  CPR_2531  cyclic nucleotide-binding domain-containing protein  23.66 
 
 
226 aa  73.6  0.000000000002  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1464  Crp/FNR family transcriptional regulator  25.7 
 
 
251 aa  74.3  0.000000000002  Burkholderia mallei NCTC 10229  Bacteria  normal  0.855917  n/a   
 
 
-
 
NC_010515  Bcenmc03_4486  Crp/FNR family transcriptional regulator  24.77 
 
 
248 aa  74.3  0.000000000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_3191  transcriptional regulator Dnr  26.6 
 
 
227 aa  73.6  0.000000000003  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_2867  Crp/FNR family transcriptional regulator  26.42 
 
 
241 aa  72.8  0.000000000004  Opitutus terrae PB90-1  Bacteria  normal  0.343371  normal  0.792405 
 
 
-
 
NC_007511  Bcep18194_B3138  Crp/FNR family transcriptional regulator  24.64 
 
 
248 aa  72.8  0.000000000004  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_5297  Crp/FNR family transcriptional regulator  25.12 
 
 
248 aa  72.8  0.000000000004  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007435  BURPS1710b_A1540  Crp/FNR family transcriptional regulator  25.7 
 
 
630 aa  72.8  0.000000000005  Burkholderia pseudomallei 1710b  Bacteria  normal  0.18142  n/a   
 
 
-
 
NC_009511  Swit_2706  Crp/FNR family transcriptional regulator  27.6 
 
 
228 aa  72.4  0.000000000007  Sphingomonas wittichii RW1  Bacteria  normal  0.154877  normal 
 
 
-
 
NC_007925  RPC_1012  Crp/FNR family transcriptional regulator  22.07 
 
 
241 aa  72  0.000000000007  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.88102  normal  0.736744 
 
 
-
 
NC_013889  TK90_0787  transcriptional regulator, Crp/Fnr family  26.46 
 
 
243 aa  72  0.000000000007  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_5008  Crp/FNR family transcriptional regulator  24.77 
 
 
249 aa  72  0.000000000007  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_1132  transcriptional regulator  22.68 
 
 
355 aa  71.6  0.000000000009  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.99008 
 
 
-
 
NC_002947  PP_4265  transcriptional regulator Anr  24.37 
 
 
244 aa  71.2  0.00000000001  Pseudomonas putida KT2440  Bacteria  normal  0.880812  normal 
 
 
-
 
NC_010322  PputGB1_3830  Crp/FNR family transcriptional regulator  24.37 
 
 
244 aa  71.2  0.00000000001  Pseudomonas putida GB-1  Bacteria  normal  normal  0.525453 
 
 
-
 
NC_010552  BamMC406_3149  Crp/FNR family transcriptional regulator  24.64 
 
 
249 aa  71.2  0.00000000001  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1603  CRP/FNR family transcriptional regulator  24.37 
 
 
244 aa  71.2  0.00000000001  Pseudomonas putida F1  Bacteria  normal  normal  0.138297 
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  26.54 
 
 
262 aa  71.6  0.00000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_010501  PputW619_3583  Crp/FNR family transcriptional regulator  24.37 
 
 
244 aa  71.2  0.00000000001  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1522  cyclic nucleotide-binding  22.52 
 
 
241 aa  71.2  0.00000000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.500349  normal  0.967279 
 
 
-
 
NC_012560  Avin_19910  Fnr-like negative transcriptional regulator of CydAB  24.62 
 
 
244 aa  71.2  0.00000000001  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_5122  Crp/FNR family transcriptional regulator  24.3 
 
 
248 aa  71.2  0.00000000001  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3812  Crp/FNR family transcriptional regulator  24.3 
 
 
257 aa  71.6  0.00000000001  Burkholderia ambifaria AMMD  Bacteria  normal  0.279241  normal  0.577974 
 
 
-
 
NC_008543  Bcen2424_5737  Crp/FNR family transcriptional regulator  24.3 
 
 
248 aa  71.2  0.00000000001  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.188641 
 
 
-
 
NC_013421  Pecwa_2398  fumarate/nitrate reduction transcriptional regulator  23.71 
 
 
248 aa  70.5  0.00000000002  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1555  transcriptional regulator, Crp/Fnr family  23.88 
 
 
230 aa  70.9  0.00000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008699  Noca_1619  cyclic nucleotide-binding  30.34 
 
 
235 aa  70.5  0.00000000002  Nocardioides sp. JS614  Bacteria  normal  0.146026  n/a   
 
 
-
 
NC_008686  Pden_2478  CRP/FNR family transcriptional regulator  26 
 
 
249 aa  70.5  0.00000000002  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.651433 
 
 
-
 
NC_012917  PC1_2105  fumarate/nitrate reduction transcriptional regulator  23.71 
 
 
248 aa  70.5  0.00000000002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0944449  n/a   
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  25.38 
 
 
240 aa  70.5  0.00000000002  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_010552  BamMC406_4280  Crp/FNR family transcriptional regulator  23.83 
 
 
257 aa  70.5  0.00000000002  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.0900166 
 
 
-
 
NC_008262  CPR_1062  Crp/FNR family transcriptional regulator  24.73 
 
 
236 aa  70.9  0.00000000002  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0917  CRP/FNR family transcriptional regulator  29.24 
 
 
254 aa  70.9  0.00000000002  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3081  CRP/FNR family transcriptional regulator  23.45 
 
 
249 aa  70.1  0.00000000003  Marinobacter aquaeolei VT8  Bacteria  normal  0.0390484  n/a   
 
 
-
 
NC_007005  Psyr_3425  cyclic nucleotide-binding: regulatory protein, Crp  23.08 
 
 
244 aa  70.1  0.00000000003  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0533041 
 
 
-
 
NC_010087  Bmul_5904  Crp/FNR family transcriptional regulator  25.52 
 
 
257 aa  70.1  0.00000000003  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.379633  normal  0.222249 
 
 
-
 
NC_007952  Bxe_B0606  Crp/FNR family transcriptional regulator  24.89 
 
 
267 aa  70.1  0.00000000003  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.149995 
 
 
-
 
NC_010483  TRQ2_1644  Crp/FNR family transcriptional regulator  24.73 
 
 
200 aa  70.1  0.00000000003  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
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