More than 300 homologs were found in PanDaTox collection
for query gene TRQ2_1644 on replicon NC_010483
Organism: Thermotoga sp. RQ2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010483  TRQ2_1644  Crp/FNR family transcriptional regulator  100 
 
 
200 aa  397  9.999999999999999e-111  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_1578  CRP/FNR family transcriptional regulator  71.36 
 
 
201 aa  299  2e-80  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_1162  Crp/FNR family transcriptional regulator  39.01 
 
 
220 aa  138  6e-32  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_0756  CRP/FNR family transcriptional regulator  35.39 
 
 
220 aa  129  3e-29  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_1303  CRP/FNR family transcriptional regulator  36.51 
 
 
229 aa  125  3e-28  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_3951  putative transcriptional regulator, Crp/Fnr family  30.9 
 
 
220 aa  107  2e-22  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_002950  PG1053  transcriptional regulator, putative  32.2 
 
 
228 aa  91.3  1e-17  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.0216294 
 
 
-
 
NC_012034  Athe_1171  cyclic nucleotide-binding protein  25.7 
 
 
226 aa  75.1  0.0000000000007  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00521884  n/a   
 
 
-
 
NC_013132  Cpin_0678  transcriptional regulator, Crp/Fnr family  26.04 
 
 
236 aa  73.9  0.000000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236133  normal 
 
 
-
 
NC_008261  CPF_2845  cyclic nucleotide-binding domain-containing protein  25.95 
 
 
226 aa  73.6  0.000000000002  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2531  cyclic nucleotide-binding domain-containing protein  26.49 
 
 
226 aa  73.2  0.000000000002  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  28.27 
 
 
227 aa  73.6  0.000000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  27.27 
 
 
229 aa  72  0.000000000005  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  28.11 
 
 
227 aa  72  0.000000000006  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_011772  BCG9842_B4894  transcriptional regulator, Crp family  24.5 
 
 
229 aa  70.9  0.00000000001  Bacillus cereus G9842  Bacteria  normal  0.0770605  normal  0.372037 
 
 
-
 
NC_011725  BCB4264_A0424  transcriptional regulator, Crp family  23.98 
 
 
229 aa  70.5  0.00000000002  Bacillus cereus B4264  Bacteria  hitchhiker  0.00556747  n/a   
 
 
-
 
NC_012917  PC1_2472  transcriptional regulator, Crp/Fnr family  24.73 
 
 
238 aa  70.1  0.00000000002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.3707  n/a   
 
 
-
 
NC_009674  Bcer98_0352  CRP/FNR family transcriptional regulator  25 
 
 
229 aa  69.3  0.00000000004  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0477  Crp family transcriptional regulator  24 
 
 
229 aa  68.9  0.00000000005  Bacillus cereus ATCC 10987  Bacteria  normal  0.0933534  n/a   
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  25.28 
 
 
248 aa  68.9  0.00000000005  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_005957  BT9727_0345  Crp family transcriptional regulator  24 
 
 
229 aa  68.6  0.00000000006  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.254354  n/a   
 
 
-
 
NC_008576  Mmc1_0460  Crp/FNR family transcriptional regulator  23.76 
 
 
232 aa  68.2  0.00000000008  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.884408 
 
 
-
 
NC_011773  BCAH820_0411  transcriptional regulator, Crp family  24 
 
 
229 aa  67.8  0.00000000009  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000553573 
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  25.52 
 
 
352 aa  67.8  0.0000000001  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_011898  Ccel_1360  transcriptional regulator, Crp/Fnr family  23.4 
 
 
235 aa  67.4  0.0000000001  Clostridium cellulolyticum H10  Bacteria  normal  0.990851  n/a   
 
 
-
 
NC_011883  Ddes_1827  transcriptional regulator, Crp/Fnr family  26.78 
 
 
229 aa  67.4  0.0000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  22.35 
 
 
229 aa  67  0.0000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_009719  Plav_0827  CRP/FNR family transcriptional regulator  25.39 
 
 
234 aa  65.9  0.0000000004  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.0664388  normal  0.45478 
 
 
-
 
NC_013421  Pecwa_2778  transcriptional regulator, Crp/Fnr family  24.19 
 
 
238 aa  65.9  0.0000000004  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0529131  n/a   
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  29.29 
 
 
222 aa  65.5  0.0000000005  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_3341  Crp/FNR family transcriptional regulator  24.61 
 
 
221 aa  65.1  0.0000000007  Acidovorax sp. JS42  Bacteria  normal  normal  0.0836398 
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  24.31 
 
 
240 aa  64.7  0.0000000008  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_011883  Ddes_0528  transcriptional regulator, Crp/Fnr family  25.79 
 
 
244 aa  64.7  0.0000000008  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  26.82 
 
 
228 aa  64.3  0.000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_014150  Bmur_2465  transcriptional regulator, Crp/Fnr family  24.18 
 
 
218 aa  63.9  0.000000002  Brachyspira murdochii DSM 12563  Bacteria  hitchhiker  2.07605e-19  n/a   
 
 
-
 
NC_008576  Mmc1_1531  Crp/FNR family transcriptional regulator  25.53 
 
 
239 aa  63.2  0.000000002  Magnetococcus sp. MC-1  Bacteria  normal  0.169257  normal 
 
 
-
 
NC_009049  Rsph17029_1972  CRP/FNR family transcriptional regulator  22.45 
 
 
233 aa  62.4  0.000000004  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3114  CRP/FNR family transcriptional regulator  21.62 
 
 
232 aa  62.4  0.000000004  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_0327  Crp/FNR family transcriptional regulator  22.45 
 
 
233 aa  62.4  0.000000004  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.539351  n/a   
 
 
-
 
NC_007498  Pcar_1491  Crp/FNR family transcriptional regulator  27.22 
 
 
224 aa  62.4  0.000000004  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000413534  n/a   
 
 
-
 
NC_011992  Dtpsy_2689  transcriptional regulator, Crp/Fnr family  24.08 
 
 
246 aa  62.4  0.000000004  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0968  CRP/FNR family transcriptional regulator  22.45 
 
 
233 aa  62.4  0.000000004  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_1523  transcriptional regulator, Crp/Fnr family  22.5 
 
 
231 aa  62.4  0.000000004  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  26.92 
 
 
241 aa  62  0.000000005  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  24.26 
 
 
236 aa  62.4  0.000000005  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0906  Crp/FNR family transcriptional regulator  26.97 
 
 
238 aa  62.4  0.000000005  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1465  Crp/FNR family transcriptional regulator  23.46 
 
 
236 aa  62  0.000000006  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.342125  normal  0.439299 
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  25.27 
 
 
229 aa  61.6  0.000000008  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  21.35 
 
 
254 aa  60.8  0.00000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  24.74 
 
 
231 aa  60.8  0.00000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  25.82 
 
 
230 aa  60.5  0.00000001  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  23.65 
 
 
236 aa  60.8  0.00000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_013889  TK90_2357  transcriptional regulator, Crp/Fnr family  22.45 
 
 
212 aa  61.2  0.00000001  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0407  transcriptional regulator, Crp/Fnr family  26.6 
 
 
243 aa  60.1  0.00000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  29.84 
 
 
234 aa  60.5  0.00000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_008700  Sama_2685  cAMP-binding protein  21.39 
 
 
272 aa  60.1  0.00000002  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_4265  transcriptional regulator Anr  23.68 
 
 
244 aa  59.7  0.00000003  Pseudomonas putida KT2440  Bacteria  normal  0.880812  normal 
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  25.58 
 
 
251 aa  59.3  0.00000003  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_009439  Pmen_2615  CRP/FNR family transcriptional regulator  25.13 
 
 
244 aa  59.3  0.00000003  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00240538  normal  0.855877 
 
 
-
 
NC_009512  Pput_1603  CRP/FNR family transcriptional regulator  23.68 
 
 
244 aa  59.7  0.00000003  Pseudomonas putida F1  Bacteria  normal  normal  0.138297 
 
 
-
 
NC_009485  BBta_6822  Crp/FNR family transcriptional regulator  22.28 
 
 
239 aa  59.3  0.00000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_19910  Fnr-like negative transcriptional regulator of CydAB  25.4 
 
 
244 aa  59.3  0.00000004  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_012039  Cla_0689  conserved hypothetical protein, putative transcriptional regulator  24.74 
 
 
200 aa  59.3  0.00000004  Campylobacter lari RM2100  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_3583  Crp/FNR family transcriptional regulator  23.68 
 
 
244 aa  59.3  0.00000004  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3788  transcriptional regulator Anr  24.87 
 
 
244 aa  59.3  0.00000004  Pseudomonas aeruginosa PA7  Bacteria  normal  0.620164  n/a   
 
 
-
 
NC_008463  PA14_44490  transcriptional regulator Anr  24.87 
 
 
244 aa  59.3  0.00000004  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.793348 
 
 
-
 
NC_010322  PputGB1_3830  Crp/FNR family transcriptional regulator  23.68 
 
 
244 aa  58.9  0.00000005  Pseudomonas putida GB-1  Bacteria  normal  normal  0.525453 
 
 
-
 
NC_013411  GYMC61_1592  transcriptional regulator, Crp/Fnr family  25 
 
 
228 aa  58.9  0.00000005  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007948  Bpro_3800  Crp/FNR family transcriptional regulator  24.57 
 
 
225 aa  58.9  0.00000005  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  19.68 
 
 
231 aa  58.9  0.00000005  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_008686  Pden_2478  CRP/FNR family transcriptional regulator  23.63 
 
 
249 aa  58.9  0.00000005  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.651433 
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  25.95 
 
 
229 aa  58.5  0.00000006  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_011206  Lferr_0981  transcriptional regulator, Crp/Fnr family  23.83 
 
 
246 aa  58.2  0.00000007  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0154476 
 
 
-
 
NC_004578  PSPTO_1991  transcriptional activator Anr  24.26 
 
 
244 aa  58.5  0.00000007  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.695719  n/a   
 
 
-
 
NC_007958  RPD_3066  cyclic nucleotide-binding  20.43 
 
 
240 aa  58.5  0.00000007  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_0857  transcriptional regulator, Crp/Fnr family  23.83 
 
 
229 aa  58.2  0.00000008  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_5316  transcriptional regulator, Crp/Fnr family  23.44 
 
 
354 aa  58.2  0.00000009  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.100222 
 
 
-
 
NC_007404  Tbd_0079  Crp/FNR family transcriptional regulator  24.73 
 
 
225 aa  58.2  0.00000009  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.849443  normal  0.162256 
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  26.42 
 
 
226 aa  57.8  0.0000001  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_008340  Mlg_1070  Crp/FNR family transcriptional regulator  25.3 
 
 
235 aa  57.8  0.0000001  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.105875  normal 
 
 
-
 
NC_007005  Psyr_3425  cyclic nucleotide-binding: regulatory protein, Crp  23.76 
 
 
244 aa  57  0.0000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0533041 
 
 
-
 
NC_013216  Dtox_2750  transcriptional regulator, Crp/Fnr family  20.34 
 
 
222 aa  56.6  0.0000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.0000000354449  normal  0.602467 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  24.28 
 
 
226 aa  56.6  0.0000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_010184  BcerKBAB4_1975  Crp/FNR family transcriptional regulator  23.5 
 
 
230 aa  56.2  0.0000003  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4520  transcriptional regulator, Crp/Fnr family  20.74 
 
 
236 aa  56.2  0.0000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_0119  transcriptional regulator, Crp/Fnr family  23.08 
 
 
220 aa  56.2  0.0000003  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.701779  n/a   
 
 
-
 
NC_008261  CPF_1250  Crp/FNR family transcriptional regulator  20.86 
 
 
236 aa  56.2  0.0000003  Clostridium perfringens ATCC 13124  Bacteria  normal  0.403908  n/a   
 
 
-
 
NC_011761  AFE_1658  transcriptional regulator, Crp/Fnr family  25.77 
 
 
222 aa  56.2  0.0000003  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.365354  n/a   
 
 
-
 
NC_011206  Lferr_1356  transcriptional regulator, Crp/Fnr family  25.77 
 
 
222 aa  56.2  0.0000003  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_2797  cAMP-regulatory protein  21.94 
 
 
198 aa  55.8  0.0000004  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.207531  n/a   
 
 
-
 
NC_011206  Lferr_0120  transcriptional regulator, Crp/Fnr family  23.08 
 
 
231 aa  55.8  0.0000004  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_1811  Crp/FNR family transcriptional regulator  24.21 
 
 
244 aa  55.5  0.0000005  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_1062  Crp/FNR family transcriptional regulator  20.86 
 
 
236 aa  55.5  0.0000005  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  25.65 
 
 
236 aa  55.1  0.0000006  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3427  Crp/FNR family transcriptional regulator  27.87 
 
 
223 aa  55.5  0.0000006  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0598833  hitchhiker  0.00496827 
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  22.7 
 
 
243 aa  55.1  0.0000007  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_013132  Cpin_4234  transcriptional regulator, Crp/Fnr family  20.94 
 
 
248 aa  54.7  0.000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3943  cAMP-regulatory protein  21.61 
 
 
214 aa  54.3  0.000001  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013170  Ccur_01090  transcriptional regulator, crp family  25.13 
 
 
224 aa  54.3  0.000001  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3331  Crp/FNR family transcriptional regulator  24.08 
 
 
258 aa  53.9  0.000001  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
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