More than 300 homologs were found in PanDaTox collection
for query gene Tbd_2593 on replicon NC_007404
Organism: Thiobacillus denitrificans ATCC 25259



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  100 
 
 
254 aa  511  1e-144  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  34.72 
 
 
226 aa  138  1e-31  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_008782  Ajs_3341  Crp/FNR family transcriptional regulator  43.2 
 
 
221 aa  136  3.0000000000000003e-31  Acidovorax sp. JS42  Bacteria  normal  normal  0.0836398 
 
 
-
 
NC_011992  Dtpsy_2689  transcriptional regulator, Crp/Fnr family  42.72 
 
 
246 aa  135  6.0000000000000005e-31  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  35.89 
 
 
248 aa  133  1.9999999999999998e-30  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_007498  Pcar_1491  Crp/FNR family transcriptional regulator  35.47 
 
 
224 aa  132  3.9999999999999996e-30  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000413534  n/a   
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  35.91 
 
 
227 aa  129  4.0000000000000003e-29  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_011206  Lferr_0981  transcriptional regulator, Crp/Fnr family  36.06 
 
 
246 aa  127  2.0000000000000002e-28  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0154476 
 
 
-
 
NC_012917  PC1_2472  transcriptional regulator, Crp/Fnr family  35.9 
 
 
238 aa  127  2.0000000000000002e-28  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.3707  n/a   
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  36.02 
 
 
228 aa  127  2.0000000000000002e-28  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_011761  AFE_0857  transcriptional regulator, Crp/Fnr family  36.06 
 
 
229 aa  126  3e-28  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  37.04 
 
 
222 aa  125  4.0000000000000003e-28  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  34.56 
 
 
241 aa  125  5e-28  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  33.18 
 
 
229 aa  124  1e-27  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A1691  CRP/FNR family transcriptional regulator  35.21 
 
 
232 aa  124  2e-27  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00272653  normal  0.637065 
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  32.71 
 
 
227 aa  123  2e-27  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  32.55 
 
 
228 aa  123  3e-27  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_013421  Pecwa_2778  transcriptional regulator, Crp/Fnr family  36.93 
 
 
238 aa  122  5e-27  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0529131  n/a   
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  34.36 
 
 
236 aa  121  9e-27  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  31.58 
 
 
219 aa  121  9.999999999999999e-27  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  33.03 
 
 
229 aa  121  9.999999999999999e-27  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  32.57 
 
 
230 aa  120  1.9999999999999998e-26  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  32.71 
 
 
231 aa  120  3e-26  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  34.11 
 
 
229 aa  119  3.9999999999999996e-26  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_008576  Mmc1_0460  Crp/FNR family transcriptional regulator  34.87 
 
 
232 aa  119  4.9999999999999996e-26  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.884408 
 
 
-
 
NC_010571  Oter_0906  Crp/FNR family transcriptional regulator  35.85 
 
 
238 aa  116  3e-25  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_3583  transcriptional regulator, Crp/Fnr family  33.91 
 
 
225 aa  115  7.999999999999999e-25  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4660  transcriptional regulator, Crp/Fnr family  33.91 
 
 
225 aa  115  7.999999999999999e-25  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_0079  Crp/FNR family transcriptional regulator  33.95 
 
 
225 aa  115  1.0000000000000001e-24  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.849443  normal  0.162256 
 
 
-
 
NC_009656  PSPA7_0628  transcriptional regulator Dnr  34.11 
 
 
227 aa  114  2.0000000000000002e-24  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_1658  transcriptional regulator, Crp/Fnr family  37 
 
 
222 aa  114  2.0000000000000002e-24  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.365354  n/a   
 
 
-
 
NC_011206  Lferr_1356  transcriptional regulator, Crp/Fnr family  37 
 
 
222 aa  114  2.0000000000000002e-24  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_06870  transcriptional regulator Dnr  34.11 
 
 
227 aa  113  3e-24  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.156456  normal 
 
 
-
 
NC_007298  Daro_3198  Crp/FNR family transcriptional regulator  30.7 
 
 
231 aa  112  4.0000000000000004e-24  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3331  Crp/FNR family transcriptional regulator  33 
 
 
258 aa  112  4.0000000000000004e-24  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  32.14 
 
 
229 aa  113  4.0000000000000004e-24  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  33.33 
 
 
227 aa  112  5e-24  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_1286  transcriptional regulator, Crp/Fnr family  31.02 
 
 
227 aa  112  8.000000000000001e-24  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RS02297  transcription regulator protein  34.76 
 
 
225 aa  111  1.0000000000000001e-23  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.419231 
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  30.73 
 
 
227 aa  111  1.0000000000000001e-23  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  35.91 
 
 
249 aa  110  2.0000000000000002e-23  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  30.41 
 
 
227 aa  110  2.0000000000000002e-23  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_007651  BTH_I1801  cyclic nucleotide-binding domain-containing protein  30.62 
 
 
229 aa  107  1e-22  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2392  cyclic nucleotide-binding domain-containing protein  30.62 
 
 
230 aa  107  1e-22  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_2752  cyclic nucleotide-binding protein  30.62 
 
 
230 aa  107  1e-22  Burkholderia pseudomallei 1106a  Bacteria  normal  0.339389  n/a   
 
 
-
 
NC_009080  BMA10247_1706  cyclic nucleotide-binding protein  30.62 
 
 
230 aa  107  1e-22  Burkholderia mallei NCTC 10247  Bacteria  normal  0.450772  n/a   
 
 
-
 
NC_008576  Mmc1_1531  Crp/FNR family transcriptional regulator  30.84 
 
 
239 aa  107  1e-22  Magnetococcus sp. MC-1  Bacteria  normal  0.169257  normal 
 
 
-
 
NC_008836  BMA10229_A2895  cyclic nucleotide-binding domain-containing protein  30.62 
 
 
230 aa  107  1e-22  Burkholderia mallei NCTC 10229  Bacteria  normal  0.869141  n/a   
 
 
-
 
NC_009074  BURPS668_2695  cyclic nucleotide-binding protein  30.62 
 
 
229 aa  107  2e-22  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0619  cyclic nucleotide-binding domain-containing protein  30.62 
 
 
229 aa  107  2e-22  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2817  cyclic nucleotide-binding domain-containing protein  30.62 
 
 
229 aa  107  2e-22  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_3443  transcriptional regulator, Crp/Fnr family  32.71 
 
 
229 aa  106  4e-22  Acidovorax ebreus TPSY  Bacteria  normal  0.12986  n/a   
 
 
-
 
NC_012856  Rpic12D_1785  transcriptional regulator, Crp/Fnr family  31.47 
 
 
225 aa  106  4e-22  Ralstonia pickettii 12D  Bacteria  normal  0.0232074  normal  0.813169 
 
 
-
 
NC_011662  Tmz1t_2606  transcriptional regulator, Crp/Fnr family  29.57 
 
 
253 aa  106  5e-22  Thauera sp. MZ1T  Bacteria  normal  0.193309  n/a   
 
 
-
 
NC_007908  Rfer_0060  Crp/FNR family transcriptional regulator  30.59 
 
 
234 aa  104  1e-21  Rhodoferax ferrireducens T118  Bacteria  normal  0.237094  n/a   
 
 
-
 
NC_010682  Rpic_2109  transcriptional regulator, Crp/Fnr family  31.16 
 
 
225 aa  103  2e-21  Ralstonia pickettii 12J  Bacteria  normal  0.170093  normal 
 
 
-
 
NC_008700  Sama_2685  cAMP-binding protein  29.82 
 
 
272 aa  103  2e-21  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  26.82 
 
 
226 aa  103  2e-21  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  29.55 
 
 
234 aa  102  4e-21  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_009953  Sare_4620  Crp/FNR family transcriptional regulator  33.18 
 
 
237 aa  102  7e-21  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.128051 
 
 
-
 
NC_013510  Tcur_0407  transcriptional regulator, Crp/Fnr family  30.91 
 
 
243 aa  102  8e-21  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  28.83 
 
 
225 aa  101  1e-20  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_007298  Daro_1669  Crp/FNR family transcriptional regulator  31.1 
 
 
233 aa  100  2e-20  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_3444  cyclic nucleotide-binding  28.17 
 
 
250 aa  100  2e-20  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_1523  transcriptional regulator, Crp/Fnr family  30.84 
 
 
231 aa  99.8  3e-20  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  31.51 
 
 
236 aa  99.8  3e-20  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_007778  RPB_1465  Crp/FNR family transcriptional regulator  32.16 
 
 
236 aa  99.8  4e-20  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.342125  normal  0.439299 
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  25.91 
 
 
231 aa  99.4  5e-20  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_007298  Daro_1036  cyclic nucleotide-binding  29.44 
 
 
245 aa  98.2  1e-19  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2636  Crp/FNR family transcriptional regulator  35.98 
 
 
234 aa  97.8  1e-19  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1454  Crp/FNR family transcriptional regulator  28.7 
 
 
252 aa  97.1  2e-19  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  25.89 
 
 
226 aa  97.4  2e-19  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  31.53 
 
 
225 aa  97.1  2e-19  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  33.18 
 
 
225 aa  97.4  2e-19  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  29.91 
 
 
231 aa  97.1  3e-19  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  29.91 
 
 
231 aa  97.1  3e-19  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  23.61 
 
 
236 aa  96.3  4e-19  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  31.53 
 
 
225 aa  96.3  4e-19  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_2129  Crp/Fnr family transcriptional regulator  30.92 
 
 
225 aa  95.9  5e-19  Meiothermus ruber DSM 1279  Bacteria  normal  0.185639  normal  0.344505 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  23.85 
 
 
225 aa  95.9  5e-19  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  30.43 
 
 
240 aa  95.9  5e-19  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  23.61 
 
 
236 aa  95.9  6e-19  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_011992  Dtpsy_1709  transcriptional regulator, Crp/Fnr family  27.43 
 
 
254 aa  94.7  1e-18  Acidovorax ebreus TPSY  Bacteria  normal  0.0525745  n/a   
 
 
-
 
NC_008782  Ajs_1904  CRP/FNR family transcriptional regulator  27.43 
 
 
254 aa  94.7  1e-18  Acidovorax sp. JS42  Bacteria  normal  0.0603838  normal  0.510939 
 
 
-
 
NC_010571  Oter_2867  Crp/FNR family transcriptional regulator  28.57 
 
 
241 aa  94  2e-18  Opitutus terrae PB90-1  Bacteria  normal  0.343371  normal  0.792405 
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  28.23 
 
 
226 aa  93.2  3e-18  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  30.45 
 
 
236 aa  93.2  4e-18  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  31.78 
 
 
226 aa  93.2  4e-18  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  32.39 
 
 
220 aa  92.8  5e-18  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_008340  Mlg_0319  Crp/FNR family transcriptional regulator  31.02 
 
 
262 aa  92.8  5e-18  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  23.92 
 
 
239 aa  92.4  6e-18  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_013530  Xcel_1838  transcriptional regulator, Crp/Fnr family  33.98 
 
 
225 aa  92.4  6e-18  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0983527  n/a   
 
 
-
 
NC_008025  Dgeo_0780  Crp/FNR family transcriptional regulator  34.6 
 
 
231 aa  92.4  6e-18  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.390237  normal 
 
 
-
 
NC_007498  Pcar_2562  cyclic AMP receptor protein  29.61 
 
 
222 aa  92  7e-18  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.553837  n/a   
 
 
-
 
NC_009952  Dshi_3189  transcriptional regulator  29.94 
 
 
236 aa  92  8e-18  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5062  cyclic nucleotide-binding  30.41 
 
 
254 aa  91.7  9e-18  Ralstonia eutropha JMP134  Bacteria  normal  0.319018  n/a   
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  30.88 
 
 
226 aa  91.3  1e-17  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_008740  Maqu_3081  CRP/FNR family transcriptional regulator  27.83 
 
 
249 aa  91.3  1e-17  Marinobacter aquaeolei VT8  Bacteria  normal  0.0390484  n/a   
 
 
-
 
NC_008496  LEUM_A06  Crp-like transcriptional regulator  23.81 
 
 
230 aa  90.9  2e-17  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0257  transcriptional regulator NnrR  28.29 
 
 
232 aa  90.5  2e-17  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
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