Gene Lcho_1454 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1454 
Symbol 
ID6162848 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1534856 
End bp1535614 
Gene Length759 bp 
Protein Length252 aa 
Translation table11 
GC content68% 
IMG OID641664208 
ProductCrp/FNR family transcriptional regulator 
Protein accessionYP_001790487 
Protein GI171058138 
COG category[T] Signal transduction mechanisms 
COG ID[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGACAACA CCCGTTTCGA TCTGCCGCGT TACCTGGCGG TGCTGCCGCT GTTCCAGGAA 
ATGACACCGG CCGAGCTGCA GCGCCTGGCC GAAGGCTGCC GACTGCGCCG CATGGTGCGT
GGCGACAACA TCTTCCGCAT CGGCGAGCCG TGCGAGGAGT TCCACGTCAC GGTGATGGGA
CAGGTCAAGC TGTACGCGAT CTCGCCGGCC GGCCAGGAAA AGGTCATCGA GCTGATCGGC
CCCGGCAACA GCTTCGCCGA GGCGCTGATG TTCACCGGCA AGCCCTACAT CATCAACGCC
CAGGCACTCA GCGACACGCT GCTGCTGAGC GTGGGCAAGG CCGCGGTGCT CGGCGAGATC
GAGCGCGACT CGCGCTTCGC GATGCGCATG CTGGCGGGCA TCTCGCGGCG CCTGCACGGC
CTCGTGCACG ACGTGCAGGC CTATGCGCTG CACAGCGGCA TGCAGCGCGT GATCGGCTAC
CTGCTGCGCG ACCTGCCCGA AGAAGGCGAC GACGCTGCCG AGATGACGCT GGCCGGTGCC
GGCTGTGCGC CGATGTGCAA GGACGAATCT GTGCCGCCGC GCGAGCTGCG CGTGTCGCTG
CCGGTCAGCA AGGCGACGAT CGCCTCGCGC CTGTCGCTGA CGCCCGAATA CTTCTCGCGC
GTGCTGCACG AGCTCGAAGG CGCCGGCCTG ATCCAGATCG ACAAGCGCGA GATCTGCATC
CCCGACCCGG GCCGGCTGGC GCGCCACAAC ATGCAGTAG
 
Protein sequence
MDNTRFDLPR YLAVLPLFQE MTPAELQRLA EGCRLRRMVR GDNIFRIGEP CEEFHVTVMG 
QVKLYAISPA GQEKVIELIG PGNSFAEALM FTGKPYIINA QALSDTLLLS VGKAAVLGEI
ERDSRFAMRM LAGISRRLHG LVHDVQAYAL HSGMQRVIGY LLRDLPEEGD DAAEMTLAGA
GCAPMCKDES VPPRELRVSL PVSKATIASR LSLTPEYFSR VLHELEGAGL IQIDKREICI
PDPGRLARHN MQ