More than 300 homologs were found in PanDaTox collection
for query gene Rpic12D_3583 on replicon NC_012857
Organism: Ralstonia pickettii 12D



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010678  Rpic_4660  transcriptional regulator, Crp/Fnr family  100 
 
 
225 aa  459  9.999999999999999e-129  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_3583  transcriptional regulator, Crp/Fnr family  100 
 
 
225 aa  459  9.999999999999999e-129  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1785  transcriptional regulator, Crp/Fnr family  80 
 
 
225 aa  370  1e-101  Ralstonia pickettii 12D  Bacteria  normal  0.0232074  normal  0.813169 
 
 
-
 
NC_010682  Rpic_2109  transcriptional regulator, Crp/Fnr family  79.11 
 
 
225 aa  363  2e-99  Ralstonia pickettii 12J  Bacteria  normal  0.170093  normal 
 
 
-
 
NC_003296  RS02297  transcription regulator protein  76.44 
 
 
225 aa  352  2.9999999999999997e-96  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.419231 
 
 
-
 
NC_011662  Tmz1t_1286  transcriptional regulator, Crp/Fnr family  39.91 
 
 
227 aa  170  2e-41  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3198  Crp/FNR family transcriptional regulator  37.22 
 
 
231 aa  163  2.0000000000000002e-39  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0060  Crp/FNR family transcriptional regulator  39.19 
 
 
234 aa  157  1e-37  Rhodoferax ferrireducens T118  Bacteria  normal  0.237094  n/a   
 
 
-
 
NC_007298  Daro_1036  cyclic nucleotide-binding  37.96 
 
 
245 aa  155  6e-37  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I1801  cyclic nucleotide-binding domain-containing protein  38.46 
 
 
229 aa  154  1e-36  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1706  cyclic nucleotide-binding protein  38.01 
 
 
230 aa  154  2e-36  Burkholderia mallei NCTC 10247  Bacteria  normal  0.450772  n/a   
 
 
-
 
NC_006348  BMA0619  cyclic nucleotide-binding domain-containing protein  38.01 
 
 
229 aa  153  2e-36  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2817  cyclic nucleotide-binding domain-containing protein  38.01 
 
 
229 aa  153  2e-36  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2392  cyclic nucleotide-binding domain-containing protein  38.01 
 
 
230 aa  154  2e-36  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_2695  cyclic nucleotide-binding protein  38.01 
 
 
229 aa  153  2e-36  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_2752  cyclic nucleotide-binding protein  38.01 
 
 
230 aa  154  2e-36  Burkholderia pseudomallei 1106a  Bacteria  normal  0.339389  n/a   
 
 
-
 
NC_008836  BMA10229_A2895  cyclic nucleotide-binding domain-containing protein  38.01 
 
 
230 aa  154  2e-36  Burkholderia mallei NCTC 10229  Bacteria  normal  0.869141  n/a   
 
 
-
 
NC_011662  Tmz1t_2606  transcriptional regulator, Crp/Fnr family  39.29 
 
 
253 aa  152  4e-36  Thauera sp. MZ1T  Bacteria  normal  0.193309  n/a   
 
 
-
 
NC_010524  Lcho_1454  Crp/FNR family transcriptional regulator  34.84 
 
 
252 aa  150  2e-35  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008782  Ajs_1904  CRP/FNR family transcriptional regulator  34.55 
 
 
254 aa  149  5e-35  Acidovorax sp. JS42  Bacteria  normal  0.0603838  normal  0.510939 
 
 
-
 
NC_011992  Dtpsy_1709  transcriptional regulator, Crp/Fnr family  34.55 
 
 
254 aa  149  5e-35  Acidovorax ebreus TPSY  Bacteria  normal  0.0525745  n/a   
 
 
-
 
NC_008825  Mpe_A1691  CRP/FNR family transcriptional regulator  40.09 
 
 
232 aa  147  1.0000000000000001e-34  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00272653  normal  0.637065 
 
 
-
 
NC_011992  Dtpsy_3443  transcriptional regulator, Crp/Fnr family  39.9 
 
 
229 aa  143  3e-33  Acidovorax ebreus TPSY  Bacteria  normal  0.12986  n/a   
 
 
-
 
NC_009953  Sare_4620  Crp/FNR family transcriptional regulator  37.62 
 
 
237 aa  135  5e-31  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.128051 
 
 
-
 
NC_007298  Daro_1669  Crp/FNR family transcriptional regulator  34.62 
 
 
233 aa  131  6.999999999999999e-30  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5062  cyclic nucleotide-binding  34.42 
 
 
254 aa  129  4.0000000000000003e-29  Ralstonia eutropha JMP134  Bacteria  normal  0.319018  n/a   
 
 
-
 
NC_011206  Lferr_0981  transcriptional regulator, Crp/Fnr family  37.56 
 
 
246 aa  127  1.0000000000000001e-28  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0154476 
 
 
-
 
NC_011761  AFE_0857  transcriptional regulator, Crp/Fnr family  37.56 
 
 
229 aa  127  1.0000000000000001e-28  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_0407  transcriptional regulator, Crp/Fnr family  34.39 
 
 
243 aa  123  2e-27  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  35.92 
 
 
226 aa  120  1.9999999999999998e-26  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  33.91 
 
 
254 aa  115  6e-25  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_007498  Pcar_1491  Crp/FNR family transcriptional regulator  36.04 
 
 
224 aa  114  8.999999999999998e-25  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000413534  n/a   
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  35.15 
 
 
248 aa  113  2.0000000000000002e-24  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  33.03 
 
 
227 aa  112  6e-24  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  34.3 
 
 
228 aa  111  7.000000000000001e-24  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_011662  Tmz1t_2638  transcriptional regulator, Crp/Fnr family  34.67 
 
 
222 aa  110  1.0000000000000001e-23  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  31.63 
 
 
241 aa  108  5e-23  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  31.1 
 
 
231 aa  107  1e-22  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  32.58 
 
 
228 aa  107  1e-22  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  30.56 
 
 
230 aa  107  2e-22  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  32.42 
 
 
229 aa  107  2e-22  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_011761  AFE_1658  transcriptional regulator, Crp/Fnr family  31.92 
 
 
222 aa  106  3e-22  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.365354  n/a   
 
 
-
 
NC_011206  Lferr_1356  transcriptional regulator, Crp/Fnr family  31.92 
 
 
222 aa  106  3e-22  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  33 
 
 
229 aa  106  4e-22  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_008576  Mmc1_0460  Crp/FNR family transcriptional regulator  33.33 
 
 
232 aa  104  1e-21  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.884408 
 
 
-
 
NC_008576  Mmc1_1531  Crp/FNR family transcriptional regulator  32.61 
 
 
239 aa  102  4e-21  Magnetococcus sp. MC-1  Bacteria  normal  0.169257  normal 
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  29.77 
 
 
229 aa  102  4e-21  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
NC_009656  PSPA7_0628  transcriptional regulator Dnr  33.8 
 
 
227 aa  101  9e-21  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_06870  transcriptional regulator Dnr  33.8 
 
 
227 aa  100  1e-20  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.156456  normal 
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  31.16 
 
 
227 aa  100  2e-20  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  29.05 
 
 
229 aa  100  2e-20  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0906  Crp/FNR family transcriptional regulator  31.19 
 
 
238 aa  98.2  1e-19  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_0079  Crp/FNR family transcriptional regulator  32.12 
 
 
225 aa  96.7  2e-19  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.849443  normal  0.162256 
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  31.34 
 
 
222 aa  95.9  5e-19  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  30.14 
 
 
227 aa  95.1  7e-19  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  27.49 
 
 
227 aa  94.4  1e-18  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  27.49 
 
 
227 aa  94.7  1e-18  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010571  Oter_2867  Crp/FNR family transcriptional regulator  27.78 
 
 
241 aa  90.9  1e-17  Opitutus terrae PB90-1  Bacteria  normal  0.343371  normal  0.792405 
 
 
-
 
NC_008740  Maqu_3081  CRP/FNR family transcriptional regulator  28.71 
 
 
249 aa  89.4  4e-17  Marinobacter aquaeolei VT8  Bacteria  normal  0.0390484  n/a   
 
 
-
 
NC_012850  Rleg_3301  transcriptional regulator, Crp/Fnr family  32.49 
 
 
227 aa  89.4  4e-17  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.306356 
 
 
-
 
NC_007575  Suden_1312  CRP/FNR family transcriptional regulator  27.27 
 
 
209 aa  89  6e-17  Sulfurimonas denitrificans DSM 1251  Bacteria  decreased coverage  0.000433355  n/a   
 
 
-
 
NC_011004  Rpal_4520  transcriptional regulator, Crp/Fnr family  27.78 
 
 
236 aa  88.6  7e-17  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_4014  transcriptional regulator, Crp/Fnr family  32.37 
 
 
233 aa  87.8  1e-16  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_3189  transcriptional regulator  27.14 
 
 
236 aa  87.4  1e-16  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  28.78 
 
 
236 aa  87.8  1e-16  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  22.22 
 
 
225 aa  87  2e-16  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  27.1 
 
 
228 aa  87.4  2e-16  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  24.19 
 
 
232 aa  86.3  4e-16  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_009092  Shew_3331  Crp/FNR family transcriptional regulator  29.53 
 
 
258 aa  85.5  7e-16  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  26.94 
 
 
225 aa  85.1  8e-16  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_007498  Pcar_2562  cyclic AMP receptor protein  29.61 
 
 
222 aa  84  0.000000000000002  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.553837  n/a   
 
 
-
 
NC_009719  Plav_1010  CRP/FNR family transcriptional regulator  28.22 
 
 
257 aa  84  0.000000000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_010730  SYO3AOP1_0465  transcriptional regulator, Crp/Fnr family  25.71 
 
 
223 aa  84  0.000000000000002  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00000000196856  n/a   
 
 
-
 
NC_008700  Sama_2685  cAMP-binding protein  27.95 
 
 
272 aa  84  0.000000000000002  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  26.05 
 
 
225 aa  83.2  0.000000000000003  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  26.05 
 
 
225 aa  82.8  0.000000000000004  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_009507  Swit_5204  CRP/FNR family transcriptional regulator  28.5 
 
 
261 aa  82.4  0.000000000000005  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.26828 
 
 
-
 
NC_007643  Rru_A2636  Crp/FNR family transcriptional regulator  34.6 
 
 
234 aa  82  0.000000000000006  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  23.32 
 
 
352 aa  82  0.000000000000006  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_011989  Avi_3466  regulator of Biofilm formation Fnr Family  33.87 
 
 
235 aa  82.4  0.000000000000006  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  26.24 
 
 
242 aa  80.9  0.00000000000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  29.21 
 
 
249 aa  80.9  0.00000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_007954  Sden_3444  cyclic nucleotide-binding  27.36 
 
 
250 aa  80.5  0.00000000000002  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  26.92 
 
 
226 aa  80.9  0.00000000000002  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_009484  Acry_2102  CRP/FNR family transcriptional regulator  24.4 
 
 
227 aa  80.9  0.00000000000002  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  27.49 
 
 
228 aa  80.1  0.00000000000003  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  28.18 
 
 
225 aa  79.7  0.00000000000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  26.36 
 
 
224 aa  80.1  0.00000000000003  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_011126  HY04AAS1_0349  transcriptional regulator, Crp/Fnr family  25.84 
 
 
219 aa  79.3  0.00000000000004  Hydrogenobaculum sp. Y04AAS1  Bacteria  hitchhiker  0.000181532  n/a   
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  26.61 
 
 
236 aa  79.3  0.00000000000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_008496  LEUM_A06  Crp-like transcriptional regulator  23.44 
 
 
230 aa  79.3  0.00000000000005  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  27.18 
 
 
240 aa  79  0.00000000000006  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  27.23 
 
 
225 aa  79  0.00000000000006  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  21.82 
 
 
243 aa  77.8  0.0000000000001  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_010084  Bmul_0755  Crp/FNR family transcriptional regulator  29.51 
 
 
235 aa  77.8  0.0000000000001  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.027549  normal  0.149867 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  23.56 
 
 
219 aa  77.4  0.0000000000001  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  28.87 
 
 
226 aa  78.2  0.0000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  27.4 
 
 
226 aa  78.2  0.0000000000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  24.55 
 
 
224 aa  77.8  0.0000000000001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  26.76 
 
 
225 aa  77.8  0.0000000000001  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
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