More than 300 homologs were found in PanDaTox collection
for query gene Sden_3444 on replicon NC_007954
Organism: Shewanella denitrificans OS217



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007954  Sden_3444  cyclic nucleotide-binding  100 
 
 
250 aa  512  1e-144  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_3331  Crp/FNR family transcriptional regulator  58.09 
 
 
258 aa  293  1e-78  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2685  cAMP-binding protein  56.48 
 
 
272 aa  254  8e-67  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_0460  Crp/FNR family transcriptional regulator  36.67 
 
 
232 aa  146  3e-34  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.884408 
 
 
-
 
NC_007404  Tbd_0079  Crp/FNR family transcriptional regulator  36.54 
 
 
225 aa  140  9.999999999999999e-33  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.849443  normal  0.162256 
 
 
-
 
NC_008576  Mmc1_1531  Crp/FNR family transcriptional regulator  34.95 
 
 
239 aa  136  4e-31  Magnetococcus sp. MC-1  Bacteria  normal  0.169257  normal 
 
 
-
 
NC_013510  Tcur_0407  transcriptional regulator, Crp/Fnr family  36.61 
 
 
243 aa  135  5e-31  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_0628  transcriptional regulator Dnr  35.86 
 
 
227 aa  135  9e-31  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_06870  transcriptional regulator Dnr  36.32 
 
 
227 aa  133  1.9999999999999998e-30  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.156456  normal 
 
 
-
 
NC_009953  Sare_4620  Crp/FNR family transcriptional regulator  34.84 
 
 
237 aa  120  1.9999999999999998e-26  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.128051 
 
 
-
 
NC_007298  Daro_1669  Crp/FNR family transcriptional regulator  31.42 
 
 
233 aa  117  1.9999999999999998e-25  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_3081  CRP/FNR family transcriptional regulator  28.37 
 
 
249 aa  115  6.9999999999999995e-25  Marinobacter aquaeolei VT8  Bacteria  normal  0.0390484  n/a   
 
 
-
 
NC_007908  Rfer_0060  Crp/FNR family transcriptional regulator  34.29 
 
 
234 aa  113  2.0000000000000002e-24  Rhodoferax ferrireducens T118  Bacteria  normal  0.237094  n/a   
 
 
-
 
NC_007298  Daro_3198  Crp/FNR family transcriptional regulator  29.09 
 
 
231 aa  112  6e-24  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A1691  CRP/FNR family transcriptional regulator  32.86 
 
 
232 aa  111  9e-24  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00272653  normal  0.637065 
 
 
-
 
NC_011662  Tmz1t_1286  transcriptional regulator, Crp/Fnr family  32.82 
 
 
227 aa  106  3e-22  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0981  transcriptional regulator, Crp/Fnr family  30.48 
 
 
246 aa  106  4e-22  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0154476 
 
 
-
 
NC_011662  Tmz1t_2606  transcriptional regulator, Crp/Fnr family  28.84 
 
 
253 aa  106  4e-22  Thauera sp. MZ1T  Bacteria  normal  0.193309  n/a   
 
 
-
 
NC_011761  AFE_0857  transcriptional regulator, Crp/Fnr family  30.48 
 
 
229 aa  105  5e-22  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  29.86 
 
 
229 aa  103  2e-21  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_011761  AFE_1658  transcriptional regulator, Crp/Fnr family  28.64 
 
 
222 aa  101  1e-20  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.365354  n/a   
 
 
-
 
NC_011206  Lferr_1356  transcriptional regulator, Crp/Fnr family  28.64 
 
 
222 aa  101  1e-20  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  30.7 
 
 
241 aa  100  2e-20  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1036  cyclic nucleotide-binding  29.05 
 
 
245 aa  100  2e-20  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  28.17 
 
 
254 aa  100  2e-20  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  33.33 
 
 
227 aa  100  2e-20  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  31.92 
 
 
227 aa  99.8  4e-20  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  29.85 
 
 
229 aa  99  6e-20  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1522  cyclic nucleotide-binding  28.87 
 
 
241 aa  97.4  2e-19  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.500349  normal  0.967279 
 
 
-
 
NC_010524  Lcho_1454  Crp/FNR family transcriptional regulator  28.57 
 
 
252 aa  97.1  2e-19  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  30.61 
 
 
229 aa  97.1  2e-19  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  30.1 
 
 
230 aa  96.7  3e-19  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_007643  Rru_A2636  Crp/FNR family transcriptional regulator  30.35 
 
 
234 aa  96.7  3e-19  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  27.98 
 
 
227 aa  96.7  3e-19  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_007925  RPC_1012  Crp/FNR family transcriptional regulator  28.91 
 
 
241 aa  94.4  1e-18  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.88102  normal  0.736744 
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  30.05 
 
 
226 aa  93.6  3e-18  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_009952  Dshi_3189  transcriptional regulator  27.78 
 
 
236 aa  93.2  3e-18  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_2562  cyclic AMP receptor protein  32.16 
 
 
222 aa  92.4  6e-18  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.553837  n/a   
 
 
-
 
NC_006348  BMA0619  cyclic nucleotide-binding domain-containing protein  27.4 
 
 
229 aa  92  8e-18  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1706  cyclic nucleotide-binding protein  27.4 
 
 
230 aa  92  8e-18  Burkholderia mallei NCTC 10247  Bacteria  normal  0.450772  n/a   
 
 
-
 
NC_009074  BURPS668_2695  cyclic nucleotide-binding protein  27.4 
 
 
229 aa  92  8e-18  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2817  cyclic nucleotide-binding domain-containing protein  27.4 
 
 
229 aa  92  8e-18  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2392  cyclic nucleotide-binding domain-containing protein  27.4 
 
 
230 aa  92  8e-18  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2895  cyclic nucleotide-binding domain-containing protein  27.4 
 
 
230 aa  92  8e-18  Burkholderia mallei NCTC 10229  Bacteria  normal  0.869141  n/a   
 
 
-
 
NC_009076  BURPS1106A_2752  cyclic nucleotide-binding protein  27.4 
 
 
230 aa  92  8e-18  Burkholderia pseudomallei 1106a  Bacteria  normal  0.339389  n/a   
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  28.08 
 
 
228 aa  91.7  9e-18  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_007651  BTH_I1801  cyclic nucleotide-binding domain-containing protein  27.4 
 
 
229 aa  91.3  1e-17  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  27.32 
 
 
236 aa  91.7  1e-17  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  27.44 
 
 
228 aa  90.9  2e-17  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_011004  Rpal_0740  transcriptional regulator, Crp/Fnr family  27.14 
 
 
255 aa  90.9  2e-17  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0906  Crp/FNR family transcriptional regulator  28.57 
 
 
238 aa  90.5  2e-17  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_1555  transcriptional regulator, Crp/Fnr family  27.11 
 
 
230 aa  89.7  4e-17  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008782  Ajs_1904  CRP/FNR family transcriptional regulator  26.92 
 
 
254 aa  89.4  5e-17  Acidovorax sp. JS42  Bacteria  normal  0.0603838  normal  0.510939 
 
 
-
 
NC_011992  Dtpsy_1709  transcriptional regulator, Crp/Fnr family  26.92 
 
 
254 aa  89.4  5e-17  Acidovorax ebreus TPSY  Bacteria  normal  0.0525745  n/a   
 
 
-
 
NC_007498  Pcar_1491  Crp/FNR family transcriptional regulator  27.72 
 
 
224 aa  89  7e-17  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000413534  n/a   
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  29.52 
 
 
248 aa  88.2  1e-16  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  25.6 
 
 
219 aa  88.2  1e-16  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  26.98 
 
 
227 aa  87  2e-16  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3301  transcriptional regulator, Crp/Fnr family  31.53 
 
 
227 aa  87.4  2e-16  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.306356 
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  27.31 
 
 
229 aa  87  3e-16  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  26.76 
 
 
231 aa  85.9  6e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_003296  RS02297  transcription regulator protein  27.96 
 
 
225 aa  84.7  0.000000000000001  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.419231 
 
 
-
 
NC_011992  Dtpsy_3443  transcriptional regulator, Crp/Fnr family  27.18 
 
 
229 aa  84.3  0.000000000000002  Acidovorax ebreus TPSY  Bacteria  normal  0.12986  n/a   
 
 
-
 
NC_008686  Pden_2478  CRP/FNR family transcriptional regulator  26.76 
 
 
249 aa  83.6  0.000000000000002  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.651433 
 
 
-
 
NC_011989  Avi_3466  regulator of Biofilm formation Fnr Family  27.62 
 
 
235 aa  84.3  0.000000000000002  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  27.46 
 
 
227 aa  83.2  0.000000000000004  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_009952  Dshi_3191  transcriptional regulator Dnr  26.67 
 
 
227 aa  82.4  0.000000000000006  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  25.12 
 
 
249 aa  81.3  0.00000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_012857  Rpic12D_3583  transcriptional regulator, Crp/Fnr family  27.36 
 
 
225 aa  80.5  0.00000000000003  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4660  transcriptional regulator, Crp/Fnr family  27.36 
 
 
225 aa  80.5  0.00000000000003  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_010730  SYO3AOP1_0465  transcriptional regulator, Crp/Fnr family  28.36 
 
 
223 aa  79.3  0.00000000000006  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00000000196856  n/a   
 
 
-
 
NC_007348  Reut_B5062  cyclic nucleotide-binding  27.31 
 
 
254 aa  79  0.00000000000007  Ralstonia eutropha JMP134  Bacteria  normal  0.319018  n/a   
 
 
-
 
NC_010682  Rpic_2109  transcriptional regulator, Crp/Fnr family  27.18 
 
 
225 aa  76.6  0.0000000000003  Ralstonia pickettii 12J  Bacteria  normal  0.170093  normal 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  27.04 
 
 
225 aa  77  0.0000000000003  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_012856  Rpic12D_1785  transcriptional regulator, Crp/Fnr family  26.7 
 
 
225 aa  76.6  0.0000000000003  Ralstonia pickettii 12D  Bacteria  normal  0.0232074  normal  0.813169 
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  23.47 
 
 
239 aa  76.6  0.0000000000004  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  27.41 
 
 
240 aa  73.9  0.000000000002  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  22.62 
 
 
231 aa  73.6  0.000000000003  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_011992  Dtpsy_2689  transcriptional regulator, Crp/Fnr family  25.91 
 
 
246 aa  73.2  0.000000000004  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3066  cyclic nucleotide-binding  25.45 
 
 
240 aa  72  0.000000000009  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0199  Crp/FNR family transcriptional regulator  27.31 
 
 
227 aa  71.2  0.00000000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_3341  Crp/FNR family transcriptional regulator  25.56 
 
 
221 aa  71.2  0.00000000001  Acidovorax sp. JS42  Bacteria  normal  normal  0.0836398 
 
 
-
 
NC_010571  Oter_2867  Crp/FNR family transcriptional regulator  23.7 
 
 
241 aa  71.6  0.00000000001  Opitutus terrae PB90-1  Bacteria  normal  0.343371  normal  0.792405 
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  22.49 
 
 
243 aa  71.2  0.00000000001  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_011662  Tmz1t_2638  transcriptional regulator, Crp/Fnr family  25.27 
 
 
222 aa  70.5  0.00000000002  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  23 
 
 
236 aa  70.9  0.00000000002  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_008463  PA14_03580  putative transcriptional regulator  25.68 
 
 
228 aa  70.1  0.00000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.000980911  hitchhiker  0.0000000000977836 
 
 
-
 
NC_011126  HY04AAS1_0349  transcriptional regulator, Crp/Fnr family  23.72 
 
 
219 aa  69.7  0.00000000004  Hydrogenobaculum sp. Y04AAS1  Bacteria  hitchhiker  0.000181532  n/a   
 
 
-
 
NC_007643  Rru_A2635  Crp/FNR family transcriptional regulator  26.74 
 
 
252 aa  69.7  0.00000000005  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.545323  n/a   
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  21.24 
 
 
226 aa  68.9  0.00000000007  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  22.5 
 
 
236 aa  68.6  0.00000000008  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_009668  Oant_4381  CRP/FNR family transcriptional regulator  22.06 
 
 
231 aa  68.2  0.0000000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2376  CRP/FNR family transcriptional regulator  26.82 
 
 
226 aa  67.8  0.0000000001  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.253524 
 
 
-
 
NC_007298  Daro_3322  cyclic nucleotide-binding  25 
 
 
495 aa  67.8  0.0000000002  Dechloromonas aromatica RCB  Bacteria  normal  hitchhiker  0.000319874 
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  24 
 
 
226 aa  67.4  0.0000000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_013512  Sdel_0691  cyclic nucleotide-binding protein  24.27 
 
 
212 aa  67.4  0.0000000002  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_3227  CRP/FNR family transcriptional regulator  25.64 
 
 
232 aa  67.8  0.0000000002  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  30 
 
 
228 aa  67.8  0.0000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2472  transcriptional regulator, Crp/Fnr family  23.62 
 
 
238 aa  67.4  0.0000000002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.3707  n/a   
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  25.48 
 
 
223 aa  67.4  0.0000000002  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
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