More than 300 homologs were found in PanDaTox collection
for query gene Avi_3466 on replicon NC_011989
Organism: Agrobacterium vitis S4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011989  Avi_3466  regulator of Biofilm formation Fnr Family  100 
 
 
235 aa  481  1e-135  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3301  transcriptional regulator, Crp/Fnr family  54.19 
 
 
227 aa  244  9.999999999999999e-64  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.306356 
 
 
-
 
NC_011368  Rleg2_5024  cyclic nucleotide-binding protein  44.19 
 
 
221 aa  184  1.0000000000000001e-45  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.923745  normal 
 
 
-
 
NC_009636  Smed_2376  CRP/FNR family transcriptional regulator  43.56 
 
 
226 aa  183  2.0000000000000003e-45  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.253524 
 
 
-
 
NC_009621  Smed_5927  cyclic nucleotide-binding protein  42.92 
 
 
226 aa  181  8.000000000000001e-45  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.514964 
 
 
-
 
NC_012848  Rleg_4954  transcriptional regulator, Crp/Fnr family  44.44 
 
 
223 aa  175  7e-43  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  hitchhiker  0.00163752  normal 
 
 
-
 
NC_007958  RPD_1522  cyclic nucleotide-binding  32.88 
 
 
241 aa  132  6.999999999999999e-30  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.500349  normal  0.967279 
 
 
-
 
NC_008686  Pden_2478  CRP/FNR family transcriptional regulator  35.07 
 
 
249 aa  130  1.0000000000000001e-29  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.651433 
 
 
-
 
NC_011004  Rpal_0740  transcriptional regulator, Crp/Fnr family  32.88 
 
 
255 aa  125  5e-28  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1012  Crp/FNR family transcriptional regulator  31.53 
 
 
241 aa  117  9.999999999999999e-26  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.88102  normal  0.736744 
 
 
-
 
NC_007404  Tbd_0079  Crp/FNR family transcriptional regulator  30.36 
 
 
225 aa  113  2.0000000000000002e-24  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.849443  normal  0.162256 
 
 
-
 
NC_009952  Dshi_3189  transcriptional regulator  30.1 
 
 
236 aa  114  2.0000000000000002e-24  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  31.31 
 
 
227 aa  105  7e-22  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_011206  Lferr_1356  transcriptional regulator, Crp/Fnr family  34.17 
 
 
222 aa  104  1e-21  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_1658  transcriptional regulator, Crp/Fnr family  34.17 
 
 
222 aa  104  1e-21  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.365354  n/a   
 
 
-
 
NC_011206  Lferr_0981  transcriptional regulator, Crp/Fnr family  30.43 
 
 
246 aa  103  2e-21  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0154476 
 
 
-
 
NC_011761  AFE_0857  transcriptional regulator, Crp/Fnr family  31.92 
 
 
229 aa  103  3e-21  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  33.99 
 
 
248 aa  103  3e-21  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_008347  Mmar10_2709  transcriptional activator FtrB  29.82 
 
 
232 aa  101  1e-20  Maricaulis maris MCS10  Bacteria  normal  normal  0.0829617 
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  30.63 
 
 
229 aa  98.6  7e-20  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  34.47 
 
 
228 aa  97.1  2e-19  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  30.5 
 
 
236 aa  96.7  3e-19  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  31.91 
 
 
227 aa  95.9  5e-19  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_004311  BRA0301  transcriptional activator FtrB  28.77 
 
 
236 aa  95.5  6e-19  Brucella suis 1330  Bacteria  normal  0.025844  n/a   
 
 
-
 
NC_009504  BOV_A0277  transcriptional activator FtrB  28.77 
 
 
236 aa  95.5  6e-19  Brucella ovis ATCC 25840  Bacteria  normal  0.739319  n/a   
 
 
-
 
NC_010571  Oter_0906  Crp/FNR family transcriptional regulator  33.33 
 
 
238 aa  95.1  8e-19  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_2889  transcriptional activator FtrB  27.15 
 
 
239 aa  94.7  1e-18  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.22661  n/a   
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  32.12 
 
 
227 aa  94  2e-18  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_4620  Crp/FNR family transcriptional regulator  34.05 
 
 
237 aa  92.8  4e-18  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.128051 
 
 
-
 
NC_009952  Dshi_3191  transcriptional regulator Dnr  30.69 
 
 
227 aa  92  6e-18  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  27.1 
 
 
226 aa  92.4  6e-18  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  28.99 
 
 
231 aa  90.1  3e-17  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_009656  PSPA7_0628  transcriptional regulator Dnr  30.84 
 
 
227 aa  89.7  3e-17  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008496  LEUM_A06  Crp-like transcriptional regulator  27.27 
 
 
230 aa  90.1  3e-17  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  28.11 
 
 
228 aa  89.7  3e-17  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_007498  Pcar_1491  Crp/FNR family transcriptional regulator  29.67 
 
 
224 aa  89.7  4e-17  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000413534  n/a   
 
 
-
 
NC_007643  Rru_A2636  Crp/FNR family transcriptional regulator  32.24 
 
 
234 aa  89.4  4e-17  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_06870  transcriptional regulator Dnr  30.84 
 
 
227 aa  88.6  8e-17  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.156456  normal 
 
 
-
 
NC_007298  Daro_3198  Crp/FNR family transcriptional regulator  25.81 
 
 
231 aa  87  2e-16  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_1286  transcriptional regulator, Crp/Fnr family  30.51 
 
 
227 aa  87.4  2e-16  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_1531  Crp/FNR family transcriptional regulator  28.77 
 
 
239 aa  87  2e-16  Magnetococcus sp. MC-1  Bacteria  normal  0.169257  normal 
 
 
-
 
NC_010571  Oter_2867  Crp/FNR family transcriptional regulator  27.98 
 
 
241 aa  87  3e-16  Opitutus terrae PB90-1  Bacteria  normal  0.343371  normal  0.792405 
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  28.43 
 
 
352 aa  85.9  5e-16  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_008687  Pden_4238  transcriptional activator FtrB  28.9 
 
 
234 aa  85.5  7e-16  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.363885 
 
 
-
 
NC_008576  Mmc1_0460  Crp/FNR family transcriptional regulator  28.85 
 
 
232 aa  85.1  8e-16  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.884408 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  28.92 
 
 
225 aa  84.7  0.000000000000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_007908  Rfer_0060  Crp/FNR family transcriptional regulator  30.69 
 
 
234 aa  84.3  0.000000000000001  Rhodoferax ferrireducens T118  Bacteria  normal  0.237094  n/a   
 
 
-
 
NC_007954  Sden_3444  cyclic nucleotide-binding  27.62 
 
 
250 aa  84.3  0.000000000000001  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_3331  Crp/FNR family transcriptional regulator  29.52 
 
 
258 aa  84.3  0.000000000000002  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0407  transcriptional regulator, Crp/Fnr family  28.24 
 
 
243 aa  84.3  0.000000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  30.28 
 
 
229 aa  84  0.000000000000002  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_010524  Lcho_1454  Crp/FNR family transcriptional regulator  27.27 
 
 
252 aa  83.2  0.000000000000003  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_003296  RS02297  transcription regulator protein  30.23 
 
 
225 aa  82  0.000000000000006  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.419231 
 
 
-
 
NC_010678  Rpic_4660  transcriptional regulator, Crp/Fnr family  33.87 
 
 
225 aa  82.4  0.000000000000006  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_3583  transcriptional regulator, Crp/Fnr family  33.87 
 
 
225 aa  82.4  0.000000000000006  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_2606  transcriptional regulator, Crp/Fnr family  28.96 
 
 
253 aa  81.6  0.000000000000009  Thauera sp. MZ1T  Bacteria  normal  0.193309  n/a   
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  29.22 
 
 
241 aa  81.3  0.00000000000001  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2392  cyclic nucleotide-binding domain-containing protein  28.11 
 
 
230 aa  81.3  0.00000000000001  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0619  cyclic nucleotide-binding domain-containing protein  28.11 
 
 
229 aa  81.3  0.00000000000001  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  29.77 
 
 
254 aa  81.3  0.00000000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_007434  BURPS1710b_2817  cyclic nucleotide-binding domain-containing protein  28.11 
 
 
229 aa  81.3  0.00000000000001  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_2752  cyclic nucleotide-binding protein  28.11 
 
 
230 aa  81.3  0.00000000000001  Burkholderia pseudomallei 1106a  Bacteria  normal  0.339389  n/a   
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  29.82 
 
 
230 aa  81.6  0.00000000000001  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_007651  BTH_I1801  cyclic nucleotide-binding domain-containing protein  28.11 
 
 
229 aa  81.3  0.00000000000001  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2895  cyclic nucleotide-binding domain-containing protein  28.11 
 
 
230 aa  81.3  0.00000000000001  Burkholderia mallei NCTC 10229  Bacteria  normal  0.869141  n/a   
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  28.38 
 
 
227 aa  80.9  0.00000000000001  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  26.61 
 
 
225 aa  81.3  0.00000000000001  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1706  cyclic nucleotide-binding protein  28.11 
 
 
230 aa  81.3  0.00000000000001  Burkholderia mallei NCTC 10247  Bacteria  normal  0.450772  n/a   
 
 
-
 
NC_009074  BURPS668_2695  cyclic nucleotide-binding protein  28.11 
 
 
229 aa  81.3  0.00000000000001  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1785  transcriptional regulator, Crp/Fnr family  29.77 
 
 
225 aa  80.9  0.00000000000002  Ralstonia pickettii 12D  Bacteria  normal  0.0232074  normal  0.813169 
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  29.95 
 
 
231 aa  80.9  0.00000000000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  30.57 
 
 
222 aa  80.5  0.00000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  27.93 
 
 
227 aa  80.5  0.00000000000002  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_008825  Mpe_A1691  CRP/FNR family transcriptional regulator  27.44 
 
 
232 aa  80.5  0.00000000000002  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00272653  normal  0.637065 
 
 
-
 
NC_008700  Sama_2685  cAMP-binding protein  28.11 
 
 
272 aa  80.5  0.00000000000002  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_3443  transcriptional regulator, Crp/Fnr family  25 
 
 
229 aa  80.1  0.00000000000003  Acidovorax ebreus TPSY  Bacteria  normal  0.12986  n/a   
 
 
-
 
NC_010682  Rpic_2109  transcriptional regulator, Crp/Fnr family  29.77 
 
 
225 aa  80.1  0.00000000000003  Ralstonia pickettii 12J  Bacteria  normal  0.170093  normal 
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  30.96 
 
 
262 aa  79.3  0.00000000000004  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_010505  Mrad2831_2595  Crp/FNR family transcriptional regulator  26.52 
 
 
251 aa  79  0.00000000000007  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.396823  normal 
 
 
-
 
NC_008740  Maqu_3081  CRP/FNR family transcriptional regulator  28.44 
 
 
249 aa  77.8  0.0000000000001  Marinobacter aquaeolei VT8  Bacteria  normal  0.0390484  n/a   
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  28.31 
 
 
229 aa  77.4  0.0000000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_3861  transcriptional activator FtrB  28.36 
 
 
256 aa  77.4  0.0000000000002  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  27.85 
 
 
226 aa  75.9  0.0000000000005  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_008025  Dgeo_0106  Crp/FNR family transcriptional regulator  26.27 
 
 
254 aa  75.5  0.0000000000006  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  24.06 
 
 
232 aa  75.1  0.0000000000009  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_008699  Noca_1619  cyclic nucleotide-binding  30.33 
 
 
235 aa  75.1  0.0000000000009  Nocardioides sp. JS614  Bacteria  normal  0.146026  n/a   
 
 
-
 
NC_007498  Pcar_2562  cyclic AMP receptor protein  30.34 
 
 
222 aa  74.7  0.000000000001  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.553837  n/a   
 
 
-
 
NC_013530  Xcel_1838  transcriptional regulator, Crp/Fnr family  29.13 
 
 
225 aa  74.7  0.000000000001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0983527  n/a   
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  30.14 
 
 
222 aa  73.9  0.000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0946  Crp/FNR family transcriptional regulator  33.96 
 
 
253 aa  73.9  0.000000000002  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  normal 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  27.56 
 
 
228 aa  73.6  0.000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  28.16 
 
 
249 aa  73.6  0.000000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  26.88 
 
 
224 aa  73.6  0.000000000003  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_2132  transcriptional regulator, Crp/Fnr family  23.87 
 
 
293 aa  73.6  0.000000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.263338  n/a   
 
 
-
 
NC_008782  Ajs_1904  CRP/FNR family transcriptional regulator  25.63 
 
 
254 aa  73.2  0.000000000004  Acidovorax sp. JS42  Bacteria  normal  0.0603838  normal  0.510939 
 
 
-
 
NC_011992  Dtpsy_1709  transcriptional regulator, Crp/Fnr family  25.63 
 
 
254 aa  73.2  0.000000000004  Acidovorax ebreus TPSY  Bacteria  normal  0.0525745  n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  27.03 
 
 
225 aa  73.2  0.000000000004  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_011365  Gdia_1984  transcriptional regulator, Crp/Fnr family  30.73 
 
 
250 aa  72.4  0.000000000005  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.312779  normal 
 
 
-
 
NC_010531  Pnec_1040  cyclic nucleotide-binding protein  24.53 
 
 
238 aa  72.8  0.000000000005  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.464794 
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  29.95 
 
 
238 aa  72.4  0.000000000006  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
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