More than 300 homologs were found in PanDaTox collection
for query gene Smed_2376 on replicon NC_009636
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009636  Smed_2376  CRP/FNR family transcriptional regulator  100 
 
 
226 aa  454  1e-127  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.253524 
 
 
-
 
NC_009621  Smed_5927  cyclic nucleotide-binding protein  61.23 
 
 
226 aa  263  2e-69  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.514964 
 
 
-
 
NC_011989  Avi_3466  regulator of Biofilm formation Fnr Family  43.56 
 
 
235 aa  183  1.0000000000000001e-45  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3301  transcriptional regulator, Crp/Fnr family  42.2 
 
 
227 aa  155  6e-37  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.306356 
 
 
-
 
NC_011368  Rleg2_5024  cyclic nucleotide-binding protein  41.86 
 
 
221 aa  143  2e-33  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.923745  normal 
 
 
-
 
NC_012848  Rleg_4954  transcriptional regulator, Crp/Fnr family  34.72 
 
 
223 aa  109  4.0000000000000004e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  hitchhiker  0.00163752  normal 
 
 
-
 
NC_011004  Rpal_0740  transcriptional regulator, Crp/Fnr family  29.63 
 
 
255 aa  107  2e-22  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1522  cyclic nucleotide-binding  28.24 
 
 
241 aa  106  3e-22  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.500349  normal  0.967279 
 
 
-
 
NC_009952  Dshi_3189  transcriptional regulator  28.91 
 
 
236 aa  103  2e-21  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_1012  Crp/FNR family transcriptional regulator  27.8 
 
 
241 aa  100  1e-20  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.88102  normal  0.736744 
 
 
-
 
NC_007404  Tbd_0079  Crp/FNR family transcriptional regulator  32.29 
 
 
225 aa  100  2e-20  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.849443  normal  0.162256 
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  33.5 
 
 
248 aa  91.7  8e-18  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  32.58 
 
 
229 aa  90.5  2e-17  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_009952  Dshi_3191  transcriptional regulator Dnr  29.91 
 
 
227 aa  90.5  2e-17  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_3861  transcriptional activator FtrB  31.9 
 
 
256 aa  88.2  8e-17  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_1939  transcriptional regulator, Crp/Fnr family  34.09 
 
 
235 aa  87.8  1e-16  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  32.26 
 
 
227 aa  88.2  1e-16  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_2478  CRP/FNR family transcriptional regulator  29.56 
 
 
249 aa  86.3  3e-16  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.651433 
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  32.86 
 
 
228 aa  81.6  0.000000000000009  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_011206  Lferr_1356  transcriptional regulator, Crp/Fnr family  28.34 
 
 
222 aa  80.9  0.00000000000001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_1658  transcriptional regulator, Crp/Fnr family  28.34 
 
 
222 aa  80.9  0.00000000000001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.365354  n/a   
 
 
-
 
NC_008347  Mmar10_2709  transcriptional activator FtrB  28.05 
 
 
232 aa  80.9  0.00000000000001  Maricaulis maris MCS10  Bacteria  normal  normal  0.0829617 
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  29.95 
 
 
228 aa  80.9  0.00000000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_008528  OEOE_0355  Crp-like transcriptional regulator  27.46 
 
 
221 aa  80.5  0.00000000000002  Oenococcus oeni PSU-1  Bacteria  normal  0.128458  n/a   
 
 
-
 
NC_011662  Tmz1t_1286  transcriptional regulator, Crp/Fnr family  29.57 
 
 
227 aa  79.3  0.00000000000005  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_0407  transcriptional regulator, Crp/Fnr family  30 
 
 
243 aa  79  0.00000000000006  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0981  transcriptional regulator, Crp/Fnr family  28.26 
 
 
246 aa  77.8  0.0000000000001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0154476 
 
 
-
 
NC_007298  Daro_1669  Crp/FNR family transcriptional regulator  29.95 
 
 
233 aa  77.4  0.0000000000002  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_0857  transcriptional regulator, Crp/Fnr family  30.32 
 
 
229 aa  77.4  0.0000000000002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_1312  CRP/FNR family transcriptional regulator  25.57 
 
 
209 aa  76.6  0.0000000000003  Sulfurimonas denitrificans DSM 1251  Bacteria  decreased coverage  0.000433355  n/a   
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  29.72 
 
 
227 aa  76.6  0.0000000000003  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_011662  Tmz1t_2638  transcriptional regulator, Crp/Fnr family  30.26 
 
 
222 aa  76.3  0.0000000000004  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RS02297  transcription regulator protein  30.48 
 
 
225 aa  75.5  0.0000000000006  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.419231 
 
 
-
 
NC_007643  Rru_A2636  Crp/FNR family transcriptional regulator  29.07 
 
 
234 aa  75.5  0.0000000000007  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  30.26 
 
 
231 aa  75.5  0.0000000000007  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_004311  BRA0301  transcriptional activator FtrB  24.77 
 
 
236 aa  75.1  0.0000000000008  Brucella suis 1330  Bacteria  normal  0.025844  n/a   
 
 
-
 
NC_009504  BOV_A0277  transcriptional activator FtrB  24.77 
 
 
236 aa  75.1  0.0000000000008  Brucella ovis ATCC 25840  Bacteria  normal  0.739319  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  28.5 
 
 
226 aa  74.7  0.000000000001  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_012857  Rpic12D_3583  transcriptional regulator, Crp/Fnr family  29.11 
 
 
225 aa  74.7  0.000000000001  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4660  transcriptional regulator, Crp/Fnr family  29.11 
 
 
225 aa  74.7  0.000000000001  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  26.09 
 
 
226 aa  73.9  0.000000000002  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008496  LEUM_A06  Crp-like transcriptional regulator  23.08 
 
 
230 aa  73.9  0.000000000002  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_3443  transcriptional regulator, Crp/Fnr family  27.42 
 
 
229 aa  73.2  0.000000000003  Acidovorax ebreus TPSY  Bacteria  normal  0.12986  n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  27.18 
 
 
231 aa  72.8  0.000000000004  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_008576  Mmc1_0460  Crp/FNR family transcriptional regulator  29.82 
 
 
232 aa  72.8  0.000000000004  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.884408 
 
 
-
 
NC_009668  Oant_2889  transcriptional activator FtrB  24.52 
 
 
239 aa  72  0.000000000007  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.22661  n/a   
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  26.67 
 
 
236 aa  70.5  0.00000000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_010730  SYO3AOP1_0465  transcriptional regulator, Crp/Fnr family  28.7 
 
 
223 aa  70.5  0.00000000002  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00000000196856  n/a   
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  21.8 
 
 
232 aa  69.3  0.00000000005  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_008262  CPR_2531  cyclic nucleotide-binding domain-containing protein  25.11 
 
 
226 aa  69.3  0.00000000005  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_0691  cyclic nucleotide-binding protein  24.75 
 
 
212 aa  68.9  0.00000000007  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_1951  Crp/FNR family transcriptional regulator  28.06 
 
 
222 aa  68.6  0.00000000007  Ruegeria sp. TM1040  Bacteria  normal  0.861655  normal  0.0267012 
 
 
-
 
NC_009767  Rcas_3427  Crp/FNR family transcriptional regulator  31.25 
 
 
223 aa  68.6  0.00000000008  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0598833  hitchhiker  0.00496827 
 
 
-
 
NC_007298  Daro_3198  Crp/FNR family transcriptional regulator  25.7 
 
 
231 aa  68.6  0.00000000009  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_2845  cyclic nucleotide-binding domain-containing protein  24.66 
 
 
226 aa  68.2  0.00000000009  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  30.81 
 
 
225 aa  68.2  0.0000000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_011126  HY04AAS1_0349  transcriptional regulator, Crp/Fnr family  23.5 
 
 
219 aa  68.2  0.0000000001  Hydrogenobaculum sp. Y04AAS1  Bacteria  hitchhiker  0.000181532  n/a   
 
 
-
 
NC_007954  Sden_3444  cyclic nucleotide-binding  26.82 
 
 
250 aa  67.8  0.0000000001  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0906  Crp/FNR family transcriptional regulator  27.23 
 
 
238 aa  67.8  0.0000000001  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_2132  transcriptional regulator, Crp/Fnr family  29.61 
 
 
293 aa  67  0.0000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.263338  n/a   
 
 
-
 
NC_007348  Reut_B5062  cyclic nucleotide-binding  27.91 
 
 
254 aa  67.4  0.0000000002  Ralstonia eutropha JMP134  Bacteria  normal  0.319018  n/a   
 
 
-
 
NC_010505  Mrad2831_2595  Crp/FNR family transcriptional regulator  29.05 
 
 
251 aa  67  0.0000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.396823  normal 
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  29.19 
 
 
227 aa  67.4  0.0000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_008463  PA14_06870  transcriptional regulator Dnr  28.05 
 
 
227 aa  67.4  0.0000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.156456  normal 
 
 
-
 
NC_009656  PSPA7_0628  transcriptional regulator Dnr  28.05 
 
 
227 aa  67.4  0.0000000002  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  30.81 
 
 
225 aa  67  0.0000000002  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  29.36 
 
 
224 aa  67  0.0000000002  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6129  Crp/FNR family transcriptional regulator  27.36 
 
 
267 aa  66.6  0.0000000003  Methylobacterium sp. 4-46  Bacteria  normal  0.0255629  normal 
 
 
-
 
NC_008025  Dgeo_1275  Crp/FNR family transcriptional regulator  28.57 
 
 
230 aa  66.6  0.0000000003  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.651323 
 
 
-
 
NC_012856  Rpic12D_1785  transcriptional regulator, Crp/Fnr family  31.09 
 
 
225 aa  66.6  0.0000000003  Ralstonia pickettii 12D  Bacteria  normal  0.0232074  normal  0.813169 
 
 
-
 
NC_008312  Tery_1557  Crp/FNR family transcriptional regulator  25.89 
 
 
234 aa  66.2  0.0000000003  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.986178 
 
 
-
 
NC_012917  PC1_2472  transcriptional regulator, Crp/Fnr family  31.18 
 
 
238 aa  66.2  0.0000000004  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.3707  n/a   
 
 
-
 
NC_010571  Oter_2867  Crp/FNR family transcriptional regulator  28.35 
 
 
241 aa  65.9  0.0000000004  Opitutus terrae PB90-1  Bacteria  normal  0.343371  normal  0.792405 
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  23.47 
 
 
243 aa  66.2  0.0000000004  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_008687  Pden_4238  transcriptional activator FtrB  28.5 
 
 
234 aa  66.2  0.0000000004  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.363885 
 
 
-
 
NC_008825  Mpe_A1691  CRP/FNR family transcriptional regulator  26.44 
 
 
232 aa  65.5  0.0000000006  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00272653  normal  0.637065 
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  31.34 
 
 
222 aa  65.5  0.0000000006  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_1531  Crp/FNR family transcriptional regulator  26.83 
 
 
239 aa  65.5  0.0000000006  Magnetococcus sp. MC-1  Bacteria  normal  0.169257  normal 
 
 
-
 
NC_013421  Pecwa_2778  transcriptional regulator, Crp/Fnr family  30.98 
 
 
238 aa  65.5  0.0000000007  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0529131  n/a   
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  23.28 
 
 
352 aa  65.1  0.0000000007  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_010682  Rpic_2109  transcriptional regulator, Crp/Fnr family  30.57 
 
 
225 aa  65.1  0.0000000008  Ralstonia pickettii 12J  Bacteria  normal  0.170093  normal 
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  27.4 
 
 
220 aa  64.3  0.000000001  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_007492  Pfl01_0199  Crp/FNR family transcriptional regulator  30.88 
 
 
227 aa  63.9  0.000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_4620  Crp/FNR family transcriptional regulator  28.44 
 
 
237 aa  63.9  0.000000002  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.128051 
 
 
-
 
NC_007908  Rfer_0060  Crp/FNR family transcriptional regulator  26.39 
 
 
234 aa  64.3  0.000000002  Rhodoferax ferrireducens T118  Bacteria  normal  0.237094  n/a   
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  27.03 
 
 
225 aa  63.9  0.000000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  29.15 
 
 
225 aa  62.8  0.000000004  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_3421  Crp/Fnr family transcriptional regulator  25.35 
 
 
232 aa  62.8  0.000000004  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  28.12 
 
 
226 aa  62.4  0.000000005  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  26.24 
 
 
251 aa  62.8  0.000000005  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_014151  Cfla_0719  transcriptional regulator, Crp/Fnr family  30.68 
 
 
257 aa  62  0.000000007  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000204419 
 
 
-
 
NC_007643  Rru_A2635  Crp/FNR family transcriptional regulator  28.44 
 
 
252 aa  62  0.000000007  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.545323  n/a   
 
 
-
 
NC_011830  Dhaf_1853  transcriptional regulator, Crp/Fnr family  26.26 
 
 
240 aa  62  0.000000007  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_7045  transcriptional regulator, Crp/Fnr family  29.65 
 
 
237 aa  62  0.000000008  Burkholderia phytofirmans PsJN  Bacteria  normal  0.601598  normal  0.0108856 
 
 
-
 
NC_013946  Mrub_2129  Crp/Fnr family transcriptional regulator  27.78 
 
 
225 aa  61.6  0.000000009  Meiothermus ruber DSM 1279  Bacteria  normal  0.185639  normal  0.344505 
 
 
-
 
NC_011894  Mnod_4596  transcriptional regulator, Crp/Fnr family  29.17 
 
 
230 aa  60.8  0.00000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_4014  transcriptional regulator, Crp/Fnr family  25.54 
 
 
233 aa  61.2  0.00000001  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009714  CHAB381_1382  transcription regulator  22.86 
 
 
213 aa  60.5  0.00000002  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1660  Crp/FNR family transcriptional regulator  27.62 
 
 
261 aa  60.5  0.00000002  Nocardioides sp. JS614  Bacteria  normal  0.74426  n/a   
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  26.15 
 
 
226 aa  60.8  0.00000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
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