More than 300 homologs were found in PanDaTox collection
for query gene Swit_5204 on replicon NC_009507
Organism: Sphingomonas wittichii RW1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009507  Swit_5204  CRP/FNR family transcriptional regulator  100 
 
 
261 aa  513  1e-144  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.26828 
 
 
-
 
NC_007406  Nwi_2417  cyclic nucleotide-binding protein  47.3 
 
 
250 aa  195  8.000000000000001e-49  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.034588  normal  0.0382931 
 
 
-
 
NC_007964  Nham_2812  Crp/FNR family transcriptional regulator  45.95 
 
 
243 aa  193  3e-48  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_1010  CRP/FNR family transcriptional regulator  41.83 
 
 
257 aa  152  7e-36  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  38.22 
 
 
240 aa  150  2e-35  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  36.44 
 
 
236 aa  143  3e-33  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_009485  BBta_6822  Crp/FNR family transcriptional regulator  36.68 
 
 
239 aa  142  4e-33  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2246  Crp/FNR family transcriptional regulator  37.22 
 
 
233 aa  142  7e-33  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_1523  transcriptional regulator, Crp/Fnr family  37.22 
 
 
231 aa  141  9.999999999999999e-33  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007493  RSP_0327  Crp/FNR family transcriptional regulator  39.67 
 
 
233 aa  140  3e-32  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.539351  n/a   
 
 
-
 
NC_007778  RPB_1465  Crp/FNR family transcriptional regulator  39.11 
 
 
236 aa  140  3e-32  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.342125  normal  0.439299 
 
 
-
 
NC_009049  Rsph17029_1972  CRP/FNR family transcriptional regulator  39.67 
 
 
233 aa  140  3e-32  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  36.87 
 
 
236 aa  138  7.999999999999999e-32  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0968  CRP/FNR family transcriptional regulator  38.59 
 
 
233 aa  138  7.999999999999999e-32  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008242  Meso_4277  Crp/FNR family transcriptional regulator  37.81 
 
 
234 aa  136  4e-31  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  35.65 
 
 
231 aa  134  1.9999999999999998e-30  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  35.65 
 
 
231 aa  134  1.9999999999999998e-30  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  36.95 
 
 
231 aa  133  3e-30  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_008554  Sfum_2941  Crp/FNR family transcriptional regulator  36.17 
 
 
235 aa  130  1.0000000000000001e-29  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3114  CRP/FNR family transcriptional regulator  34.36 
 
 
232 aa  125  6e-28  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_4381  CRP/FNR family transcriptional regulator  31.53 
 
 
231 aa  122  6e-27  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011887  Mnod_8112  transcriptional regulator, Crp/Fnr family  34.76 
 
 
229 aa  121  9.999999999999999e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0257  transcriptional regulator NnrR  31.16 
 
 
232 aa  119  3.9999999999999996e-26  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0281  transcriptional regulator NnrR  31.16 
 
 
232 aa  119  4.9999999999999996e-26  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  32.27 
 
 
228 aa  108  6e-23  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_009523  RoseRS_0595  CRP/FNR family transcriptional regulator  32.09 
 
 
228 aa  105  8e-22  Roseiflexus sp. RS-1  Bacteria  normal  0.130469  unclonable  0.00000708114 
 
 
-
 
NC_009767  Rcas_3897  Crp/FNR family transcriptional regulator  31.65 
 
 
227 aa  102  6e-21  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.280734  normal  0.887061 
 
 
-
 
NC_011004  Rpal_0837  transcriptional regulator, Crp/Fnr family  31.34 
 
 
234 aa  102  8e-21  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  33.49 
 
 
248 aa  102  9e-21  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  28.57 
 
 
249 aa  101  1e-20  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_013526  Tter_2020  transcriptional regulator, Crp/Fnr family  35.55 
 
 
239 aa  100  3e-20  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.0424227  n/a   
 
 
-
 
NC_008699  Noca_1660  Crp/FNR family transcriptional regulator  32.06 
 
 
261 aa  99.8  4e-20  Nocardioides sp. JS614  Bacteria  normal  0.74426  n/a   
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  32.2 
 
 
225 aa  99.4  5e-20  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_007778  RPB_3150  Crp/FNR family transcriptional regulator  31.64 
 
 
252 aa  96.3  5e-19  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010730  SYO3AOP1_0394  transcriptional regulator, Crp/Fnr family  32.28 
 
 
237 aa  95.5  7e-19  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3066  cyclic nucleotide-binding  30.88 
 
 
240 aa  94.7  1e-18  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  30.91 
 
 
228 aa  94  2e-18  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_008340  Mlg_1070  Crp/FNR family transcriptional regulator  33.15 
 
 
235 aa  93.6  3e-18  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.105875  normal 
 
 
-
 
NC_014212  Mesil_2074  transcriptional regulator, Crp/Fnr family  31.34 
 
 
225 aa  93.2  4e-18  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.971908 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  27.45 
 
 
226 aa  90.9  2e-17  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_0355  Crp-like transcriptional regulator  28.76 
 
 
221 aa  89.7  4e-17  Oenococcus oeni PSU-1  Bacteria  normal  0.128458  n/a   
 
 
-
 
NC_011004  Rpal_4520  transcriptional regulator, Crp/Fnr family  29.74 
 
 
236 aa  89.4  6e-17  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  28.97 
 
 
227 aa  89.4  6e-17  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  31.51 
 
 
229 aa  89  8e-17  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  24.89 
 
 
236 aa  88.6  1e-16  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_011831  Cagg_2668  transcriptional regulator, Crp/Fnr family  29.68 
 
 
225 aa  87.8  1e-16  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0967754  hitchhiker  0.000000348595 
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  24.89 
 
 
236 aa  86.7  3e-16  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_013172  Bfae_24470  cAMP-binding protein  30.92 
 
 
261 aa  85.9  6e-16  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  27.73 
 
 
236 aa  85.9  6e-16  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  30 
 
 
226 aa  85.9  6e-16  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  29.33 
 
 
225 aa  85.5  9e-16  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1678  transcriptional regulator, Crp/Fnr family  25.36 
 
 
234 aa  85.5  9e-16  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RS02297  transcription regulator protein  31.35 
 
 
225 aa  85.1  0.000000000000001  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.419231 
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  28.77 
 
 
227 aa  84.7  0.000000000000001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  26.99 
 
 
226 aa  84.7  0.000000000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  25.11 
 
 
243 aa  84  0.000000000000002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_013946  Mrub_2129  Crp/Fnr family transcriptional regulator  30 
 
 
225 aa  83.6  0.000000000000003  Meiothermus ruber DSM 1279  Bacteria  normal  0.185639  normal  0.344505 
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  25.79 
 
 
236 aa  83.2  0.000000000000003  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  25.79 
 
 
236 aa  83.2  0.000000000000004  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_012857  Rpic12D_3583  transcriptional regulator, Crp/Fnr family  28.5 
 
 
225 aa  82.4  0.000000000000007  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4660  transcriptional regulator, Crp/Fnr family  28.5 
 
 
225 aa  82.4  0.000000000000007  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0559  Crp/FNR family transcriptional regulator  26.98 
 
 
225 aa  81.6  0.00000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.338488  normal  0.42035 
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  28.24 
 
 
224 aa  80.5  0.00000000000002  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2027  transcriptional regulator, Crp/Fnr family  25.77 
 
 
226 aa  80.1  0.00000000000003  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  26.05 
 
 
224 aa  79.7  0.00000000000004  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  25.26 
 
 
239 aa  79.7  0.00000000000004  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_010511  M446_0723  Crp/FNR family transcriptional regulator  30.67 
 
 
228 aa  79  0.00000000000007  Methylobacterium sp. 4-46  Bacteria  normal  0.362046  normal  0.190371 
 
 
-
 
NC_011126  HY04AAS1_0644  transcriptional regulator, Crp/Fnr family  23.92 
 
 
243 aa  79  0.00000000000008  Hydrogenobaculum sp. Y04AAS1  Bacteria  unclonable  0.0000000000000386152  n/a   
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  25.7 
 
 
228 aa  78.6  0.00000000000009  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_4596  transcriptional regulator, Crp/Fnr family  26.94 
 
 
230 aa  78.6  0.00000000000009  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_1939  transcriptional regulator, Crp/Fnr family  25.78 
 
 
235 aa  78.6  0.0000000000001  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  26.89 
 
 
227 aa  77.4  0.0000000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_012560  Avin_22000  transcriptional regulator, Crp/Fnr family  31.91 
 
 
235 aa  77.4  0.0000000000002  Azotobacter vinelandii DJ  Bacteria  normal  0.457493  n/a   
 
 
-
 
NC_010682  Rpic_2109  transcriptional regulator, Crp/Fnr family  29.19 
 
 
225 aa  76.6  0.0000000000003  Ralstonia pickettii 12J  Bacteria  normal  0.170093  normal 
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  28.34 
 
 
243 aa  76.6  0.0000000000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_013216  Dtox_2750  transcriptional regulator, Crp/Fnr family  24.41 
 
 
222 aa  76.3  0.0000000000005  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.0000000354449  normal  0.602467 
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  29.38 
 
 
226 aa  76.3  0.0000000000005  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  28.64 
 
 
231 aa  76.3  0.0000000000005  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_012856  Rpic12D_1785  transcriptional regulator, Crp/Fnr family  28.65 
 
 
225 aa  76.3  0.0000000000005  Ralstonia pickettii 12D  Bacteria  normal  0.0232074  normal  0.813169 
 
 
-
 
NC_013169  Ksed_20120  cAMP-binding protein  26.98 
 
 
223 aa  75.9  0.0000000000006  Kytococcus sedentarius DSM 20547  Bacteria  hitchhiker  0.00290987  normal  0.0142715 
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  26.27 
 
 
226 aa  75.5  0.0000000000008  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  25.82 
 
 
228 aa  75.5  0.0000000000009  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  27.45 
 
 
226 aa  75.5  0.0000000000009  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  23 
 
 
225 aa  74.7  0.000000000001  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_0796  cyclic nucleotide-binding protein  27.41 
 
 
238 aa  75.1  0.000000000001  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  23.25 
 
 
247 aa  73.9  0.000000000002  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  26.15 
 
 
241 aa  74.7  0.000000000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  24.88 
 
 
228 aa  74.7  0.000000000002  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_0979  cAMP-binding protein  26.67 
 
 
239 aa  74.3  0.000000000002  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0292  CRP/FNR family transcriptional regulator  32.8 
 
 
224 aa  74.3  0.000000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.210312  normal  0.0189188 
 
 
-
 
NC_009719  Plav_2039  CRP/FNR family transcriptional regulator  26.63 
 
 
242 aa  73.9  0.000000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191538  hitchhiker  0.00387918 
 
 
-
 
NC_008527  LACR_1045  Crp-like transcriptional regulator  28.18 
 
 
229 aa  73.9  0.000000000002  Lactococcus lactis subsp. cremoris SK11  Bacteria  decreased coverage  0.000241394  n/a   
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  23.76 
 
 
232 aa  74.3  0.000000000002  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  26.15 
 
 
230 aa  73.6  0.000000000003  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_010531  Pnec_1040  cyclic nucleotide-binding protein  27.55 
 
 
238 aa  73.6  0.000000000004  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.464794 
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  26.79 
 
 
226 aa  73.2  0.000000000004  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  27.89 
 
 
234 aa  73.2  0.000000000004  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  24.4 
 
 
251 aa  72.8  0.000000000005  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  26.79 
 
 
226 aa  72.8  0.000000000005  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_013721  HMPREF0424_0303  cyclic nucleotide-binding domain protein  24.52 
 
 
236 aa  72.8  0.000000000005  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.232206 
 
 
-
 
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