More than 300 homologs were found in PanDaTox collection
for query gene Rpal_0837 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_0837  transcriptional regulator, Crp/Fnr family  100 
 
 
234 aa  473  1e-132  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3150  Crp/FNR family transcriptional regulator  70.56 
 
 
252 aa  332  3e-90  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3066  cyclic nucleotide-binding  67.24 
 
 
240 aa  324  7e-88  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011887  Mnod_8112  transcriptional regulator, Crp/Fnr family  49.54 
 
 
229 aa  211  1e-53  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_4381  CRP/FNR family transcriptional regulator  37.12 
 
 
231 aa  169  2e-41  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  37.55 
 
 
231 aa  167  1e-40  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  37.55 
 
 
231 aa  167  1e-40  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  40.28 
 
 
231 aa  167  2e-40  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  37.67 
 
 
236 aa  149  3e-35  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  36.53 
 
 
236 aa  149  4e-35  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  41.06 
 
 
240 aa  145  4.0000000000000006e-34  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_009668  Oant_3114  CRP/FNR family transcriptional regulator  35.65 
 
 
232 aa  144  9e-34  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_1523  transcriptional regulator, Crp/Fnr family  37.5 
 
 
231 aa  143  2e-33  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007778  RPB_1465  Crp/FNR family transcriptional regulator  39.41 
 
 
236 aa  142  5e-33  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.342125  normal  0.439299 
 
 
-
 
NC_009485  BBta_6822  Crp/FNR family transcriptional regulator  38.64 
 
 
239 aa  141  9.999999999999999e-33  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2246  Crp/FNR family transcriptional regulator  38.94 
 
 
233 aa  141  9.999999999999999e-33  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_1010  CRP/FNR family transcriptional regulator  36.56 
 
 
257 aa  134  9.999999999999999e-31  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_008242  Meso_4277  Crp/FNR family transcriptional regulator  34.4 
 
 
234 aa  132  6e-30  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2941  Crp/FNR family transcriptional regulator  33.33 
 
 
235 aa  131  1.0000000000000001e-29  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009504  BOV_A0257  transcriptional regulator NnrR  33.94 
 
 
232 aa  129  3e-29  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_0327  Crp/FNR family transcriptional regulator  36.45 
 
 
233 aa  129  4.0000000000000003e-29  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.539351  n/a   
 
 
-
 
NC_009049  Rsph17029_1972  CRP/FNR family transcriptional regulator  36.45 
 
 
233 aa  129  4.0000000000000003e-29  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_2417  cyclic nucleotide-binding protein  32.74 
 
 
250 aa  129  5.0000000000000004e-29  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.034588  normal  0.0382931 
 
 
-
 
NC_004311  BRA0281  transcriptional regulator NnrR  33.03 
 
 
232 aa  126  3e-28  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_2812  Crp/FNR family transcriptional regulator  32.88 
 
 
243 aa  125  5e-28  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0968  CRP/FNR family transcriptional regulator  33.64 
 
 
233 aa  122  3e-27  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1070  Crp/FNR family transcriptional regulator  33.18 
 
 
235 aa  122  5e-27  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.105875  normal 
 
 
-
 
NC_008699  Noca_1660  Crp/FNR family transcriptional regulator  33.66 
 
 
261 aa  112  5e-24  Nocardioides sp. JS614  Bacteria  normal  0.74426  n/a   
 
 
-
 
NC_009507  Swit_5204  CRP/FNR family transcriptional regulator  31.34 
 
 
261 aa  102  7e-21  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.26828 
 
 
-
 
NC_009523  RoseRS_0595  CRP/FNR family transcriptional regulator  29.82 
 
 
228 aa  100  2e-20  Roseiflexus sp. RS-1  Bacteria  normal  0.130469  unclonable  0.00000708114 
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  29.03 
 
 
249 aa  99.8  3e-20  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  31.08 
 
 
228 aa  99  6e-20  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  29.63 
 
 
226 aa  96.3  4e-19  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  30.56 
 
 
227 aa  95.5  6e-19  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0394  transcriptional regulator, Crp/Fnr family  27.75 
 
 
237 aa  95.1  9e-19  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  28.23 
 
 
243 aa  94  2e-18  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  27.72 
 
 
227 aa  93.2  3e-18  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3897  Crp/FNR family transcriptional regulator  28.22 
 
 
227 aa  92.8  4e-18  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.280734  normal  0.887061 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  25 
 
 
225 aa  92.8  4e-18  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  26.85 
 
 
229 aa  91.3  1e-17  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_1951  Crp/FNR family transcriptional regulator  31.25 
 
 
222 aa  88.2  9e-17  Ruegeria sp. TM1040  Bacteria  normal  0.861655  normal  0.0267012 
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  28.97 
 
 
226 aa  88.2  1e-16  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_009253  Dred_1262  CRP/FNR family transcriptional regulator  28.57 
 
 
222 aa  87.4  2e-16  Desulfotomaculum reducens MI-1  Bacteria  normal  0.247212  n/a   
 
 
-
 
NC_013216  Dtox_2750  transcriptional regulator, Crp/Fnr family  29.89 
 
 
222 aa  86.7  3e-16  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.0000000354449  normal  0.602467 
 
 
-
 
NC_014151  Cfla_0719  transcriptional regulator, Crp/Fnr family  29.32 
 
 
257 aa  86.7  3e-16  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000204419 
 
 
-
 
NC_013172  Bfae_24470  cAMP-binding protein  29.6 
 
 
261 aa  85.5  6e-16  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2027  transcriptional regulator, Crp/Fnr family  30.69 
 
 
226 aa  85.1  8e-16  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  23.92 
 
 
219 aa  84.3  0.000000000000001  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  22.93 
 
 
231 aa  84.7  0.000000000000001  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_013526  Tter_2020  transcriptional regulator, Crp/Fnr family  31.63 
 
 
239 aa  84  0.000000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.0424227  n/a   
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  28.57 
 
 
227 aa  84  0.000000000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011126  HY04AAS1_0644  transcriptional regulator, Crp/Fnr family  25.7 
 
 
243 aa  83.2  0.000000000000003  Hydrogenobaculum sp. Y04AAS1  Bacteria  unclonable  0.0000000000000386152  n/a   
 
 
-
 
NC_008009  Acid345_1422  cyclic nucleotide-binding protein  28.05 
 
 
238 aa  83.2  0.000000000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.309633  normal  0.119588 
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  27.15 
 
 
227 aa  83.2  0.000000000000003  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  24.31 
 
 
236 aa  83.2  0.000000000000003  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_010424  Daud_1482  CRP/FNR family transcriptional regulator  28.27 
 
 
235 aa  82.8  0.000000000000004  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000000238682  n/a   
 
 
-
 
NC_008009  Acid345_0657  cyclic nucleotide-binding protein  26.57 
 
 
246 aa  82.8  0.000000000000004  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.418671  normal  0.417958 
 
 
-
 
NC_011831  Cagg_2668  transcriptional regulator, Crp/Fnr family  28.34 
 
 
225 aa  82.8  0.000000000000005  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0967754  hitchhiker  0.000000348595 
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  26.19 
 
 
226 aa  82  0.000000000000006  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  23.85 
 
 
236 aa  82  0.000000000000006  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_011126  HY04AAS1_0349  transcriptional regulator, Crp/Fnr family  26.03 
 
 
219 aa  82  0.000000000000006  Hydrogenobaculum sp. Y04AAS1  Bacteria  hitchhiker  0.000181532  n/a   
 
 
-
 
NC_010531  Pnec_1040  cyclic nucleotide-binding protein  27.8 
 
 
238 aa  82  0.000000000000006  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.464794 
 
 
-
 
NC_013739  Cwoe_0602  transcriptional regulator, Crp/Fnr family  29.06 
 
 
225 aa  81.6  0.000000000000009  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.628877 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  28.02 
 
 
226 aa  81.6  0.000000000000009  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  27.31 
 
 
224 aa  81.6  0.00000000000001  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  25.12 
 
 
225 aa  81.6  0.00000000000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_009485  BBta_0559  Crp/FNR family transcriptional regulator  26.39 
 
 
225 aa  81.3  0.00000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.338488  normal  0.42035 
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  30.61 
 
 
234 aa  81.3  0.00000000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_008228  Patl_2085  Crp/FNR family transcriptional regulator  29.74 
 
 
264 aa  80.9  0.00000000000001  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  26.09 
 
 
231 aa  81.3  0.00000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  24.74 
 
 
226 aa  80.5  0.00000000000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  23.5 
 
 
227 aa  80.9  0.00000000000002  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_011830  Dhaf_3071  transcriptional regulator, Crp/Fnr family  29.17 
 
 
224 aa  79.7  0.00000000000003  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00222127  n/a   
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  23.36 
 
 
229 aa  80.1  0.00000000000003  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  23.5 
 
 
227 aa  79.7  0.00000000000003  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009953  Sare_4620  Crp/FNR family transcriptional regulator  28.7 
 
 
237 aa  79.7  0.00000000000003  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.128051 
 
 
-
 
NC_011830  Dhaf_3158  transcriptional regulator, Crp/Fnr family  25 
 
 
223 aa  79  0.00000000000006  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_2016  Crp/FNR family transcriptional regulator  27.95 
 
 
229 aa  78.6  0.00000000000007  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0776172  n/a   
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  22.75 
 
 
239 aa  78.6  0.00000000000009  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_011894  Mnod_3035  transcriptional regulator, Crp/Fnr family  28.44 
 
 
224 aa  77.8  0.0000000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.738115  n/a   
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  21.82 
 
 
241 aa  77  0.0000000000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1987  fumarate/nitrate reduction transcriptional regulator  26.29 
 
 
239 aa  77  0.0000000000002  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  29.2 
 
 
222 aa  77  0.0000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  22.58 
 
 
230 aa  77  0.0000000000002  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_010676  Bphyt_7045  transcriptional regulator, Crp/Fnr family  27.88 
 
 
237 aa  77.4  0.0000000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  0.601598  normal  0.0108856 
 
 
-
 
NC_010816  BLD_0979  cAMP-binding protein  25.24 
 
 
239 aa  76.6  0.0000000000003  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_2867  Crp/FNR family transcriptional regulator  26.32 
 
 
241 aa  76.6  0.0000000000003  Opitutus terrae PB90-1  Bacteria  normal  0.343371  normal  0.792405 
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  24.15 
 
 
225 aa  76.6  0.0000000000003  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  23.85 
 
 
229 aa  76.3  0.0000000000003  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  28.31 
 
 
254 aa  76.3  0.0000000000004  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  25.48 
 
 
251 aa  76.3  0.0000000000004  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  25 
 
 
225 aa  76.3  0.0000000000004  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B0027  Crp/FNR family transcriptional regulator  27.23 
 
 
237 aa  75.9  0.0000000000006  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_1944  transcriptional regulator, Crp/Fnr family  23.67 
 
 
227 aa  75.5  0.0000000000006  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  29.38 
 
 
222 aa  75.5  0.0000000000007  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  30.88 
 
 
262 aa  75.1  0.0000000000008  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  22.75 
 
 
220 aa  75.1  0.0000000000009  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_013512  Sdel_0691  cyclic nucleotide-binding protein  27.49 
 
 
212 aa  75.1  0.0000000000009  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_0783  CRP/FNR family transcriptional regulator  27.14 
 
 
217 aa  74.7  0.000000000001  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1955  transcriptional regulator, Crp/Fnr family  27.23 
 
 
229 aa  75.1  0.000000000001  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
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