274 homologs were found in PanDaTox collection
for query gene Acid345_0657 on replicon NC_008009
Organism: Candidatus Koribacter versatilis Ellin345



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008009  Acid345_0657  cyclic nucleotide-binding protein  100 
 
 
246 aa  498  1e-140  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.418671  normal  0.417958 
 
 
-
 
NC_008009  Acid345_1422  cyclic nucleotide-binding protein  33.96 
 
 
238 aa  129  5.0000000000000004e-29  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.309633  normal  0.119588 
 
 
-
 
NC_008009  Acid345_2437  cyclic nucleotide-binding protein  32.56 
 
 
230 aa  123  3e-27  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.391924 
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  29.77 
 
 
240 aa  107  2e-22  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  28.37 
 
 
236 aa  105  6e-22  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1465  Crp/FNR family transcriptional regulator  29.3 
 
 
236 aa  100  3e-20  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.342125  normal  0.439299 
 
 
-
 
NC_009485  BBta_6822  Crp/FNR family transcriptional regulator  28.7 
 
 
239 aa  99.8  4e-20  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3897  Crp/FNR family transcriptional regulator  28.5 
 
 
227 aa  98.2  1e-19  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.280734  normal  0.887061 
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  27.78 
 
 
236 aa  97.4  2e-19  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_011887  Mnod_8112  transcriptional regulator, Crp/Fnr family  28.91 
 
 
229 aa  97.4  2e-19  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3066  cyclic nucleotide-binding  27.54 
 
 
240 aa  93.6  3e-18  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2246  Crp/FNR family transcriptional regulator  29.91 
 
 
233 aa  93.6  3e-18  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0595  CRP/FNR family transcriptional regulator  28.3 
 
 
228 aa  92.4  6e-18  Roseiflexus sp. RS-1  Bacteria  normal  0.130469  unclonable  0.00000708114 
 
 
-
 
NC_008340  Mlg_1070  Crp/FNR family transcriptional regulator  26.61 
 
 
235 aa  88.2  1e-16  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.105875  normal 
 
 
-
 
NC_008242  Meso_4277  Crp/FNR family transcriptional regulator  27.44 
 
 
234 aa  86.3  4e-16  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2027  transcriptional regulator, Crp/Fnr family  26.05 
 
 
226 aa  84.7  0.000000000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011126  HY04AAS1_0644  transcriptional regulator, Crp/Fnr family  26.48 
 
 
243 aa  84.3  0.000000000000002  Hydrogenobaculum sp. Y04AAS1  Bacteria  unclonable  0.0000000000000386152  n/a   
 
 
-
 
NC_009719  Plav_1010  CRP/FNR family transcriptional regulator  27.36 
 
 
257 aa  84  0.000000000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3150  Crp/FNR family transcriptional regulator  24.52 
 
 
252 aa  83.6  0.000000000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  25.73 
 
 
231 aa  82.8  0.000000000000004  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_0837  transcriptional regulator, Crp/Fnr family  26.57 
 
 
234 aa  82.8  0.000000000000004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  25.73 
 
 
231 aa  82.8  0.000000000000004  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_1523  transcriptional regulator, Crp/Fnr family  26.98 
 
 
231 aa  82.4  0.000000000000006  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_009428  Rsph17025_0968  CRP/FNR family transcriptional regulator  25.7 
 
 
233 aa  82.4  0.000000000000007  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  24.76 
 
 
231 aa  81.3  0.00000000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_007493  RSP_0327  Crp/FNR family transcriptional regulator  27.27 
 
 
233 aa  78.6  0.00000000000008  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.539351  n/a   
 
 
-
 
NC_009049  Rsph17029_1972  CRP/FNR family transcriptional regulator  27.27 
 
 
233 aa  78.6  0.00000000000008  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_4381  CRP/FNR family transcriptional regulator  25.24 
 
 
231 aa  78.6  0.00000000000009  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2941  Crp/FNR family transcriptional regulator  24.89 
 
 
235 aa  76.6  0.0000000000003  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_2812  Crp/FNR family transcriptional regulator  25.35 
 
 
243 aa  74.7  0.000000000001  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  24.06 
 
 
231 aa  72.8  0.000000000005  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0394  transcriptional regulator, Crp/Fnr family  28.88 
 
 
237 aa  72.4  0.000000000006  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_0106  Crp/FNR family transcriptional regulator  27.23 
 
 
254 aa  72  0.000000000008  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3114  CRP/FNR family transcriptional regulator  24.42 
 
 
232 aa  71.6  0.00000000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_2417  cyclic nucleotide-binding protein  25.82 
 
 
250 aa  71.2  0.00000000002  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.034588  normal  0.0382931 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  25.93 
 
 
225 aa  70.9  0.00000000002  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_3029  CRP/FNR family transcriptional regulator  25.25 
 
 
228 aa  68.2  0.0000000001  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_3071  transcriptional regulator, Crp/Fnr family  24.17 
 
 
224 aa  67.8  0.0000000002  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00222127  n/a   
 
 
-
 
NC_011831  Cagg_2668  transcriptional regulator, Crp/Fnr family  25.13 
 
 
225 aa  67.4  0.0000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0967754  hitchhiker  0.000000348595 
 
 
-
 
NC_008781  Pnap_0532  cyclic nucleotide-binding protein  24.29 
 
 
276 aa  67.4  0.0000000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.053126  normal  0.207643 
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  25 
 
 
225 aa  67  0.0000000003  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  23.94 
 
 
226 aa  66.6  0.0000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  24.65 
 
 
224 aa  65.9  0.0000000006  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  25.57 
 
 
224 aa  65.5  0.0000000008  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  26.7 
 
 
225 aa  64.7  0.000000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  25.69 
 
 
220 aa  64.7  0.000000001  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  27.19 
 
 
226 aa  63.9  0.000000002  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  25.24 
 
 
226 aa  63.2  0.000000004  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  26.21 
 
 
225 aa  63.2  0.000000004  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  25.12 
 
 
226 aa  63.2  0.000000004  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_010814  Glov_0629  transcriptional regulator, Crp/Fnr family  23.16 
 
 
230 aa  62.8  0.000000005  Geobacter lovleyi SZ  Bacteria  decreased coverage  0.0000285446  n/a   
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  22.54 
 
 
228 aa  62.4  0.000000006  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  28.79 
 
 
225 aa  62.4  0.000000007  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  21.59 
 
 
352 aa  62.4  0.000000007  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_004311  BRA0281  transcriptional regulator NnrR  23.9 
 
 
232 aa  61.2  0.00000001  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_3932  transcriptional regulator, Crp/Fnr family  25.26 
 
 
224 aa  61.2  0.00000001  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.571672  n/a   
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  22.94 
 
 
243 aa  61.2  0.00000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_009504  BOV_A0257  transcriptional regulator NnrR  24.39 
 
 
232 aa  61.2  0.00000001  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  23 
 
 
228 aa  61.2  0.00000001  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_0253  transcriptional regulator, Crp/Fnr family  25.39 
 
 
224 aa  61.2  0.00000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  23.58 
 
 
236 aa  60.5  0.00000002  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  23.58 
 
 
236 aa  61.2  0.00000002  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_012560  Avin_22000  transcriptional regulator, Crp/Fnr family  24.3 
 
 
235 aa  60.8  0.00000002  Azotobacter vinelandii DJ  Bacteria  normal  0.457493  n/a   
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  24.53 
 
 
226 aa  60.5  0.00000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_0505  cyclic nucleotide-binding protein  24.34 
 
 
224 aa  60.5  0.00000002  Gordonia bronchialis DSM 43247  Bacteria  normal  0.287437  n/a   
 
 
-
 
NC_011138  MADE_01198  cyclic nucleotide-binding protein  21.95 
 
 
229 aa  60.1  0.00000003  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  24.76 
 
 
226 aa  59.7  0.00000004  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_013159  Svir_36130  cAMP-binding protein  24.34 
 
 
224 aa  59.7  0.00000004  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.758224 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  24.88 
 
 
226 aa  60.1  0.00000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  23.15 
 
 
228 aa  59.7  0.00000005  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_3398  CRP/FNR family transcriptional regulator  23.41 
 
 
230 aa  59.7  0.00000005  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0252  Crp/FNR family transcriptional regulator  26.55 
 
 
218 aa  58.9  0.00000006  Roseiflexus castenholzii DSM 13941  Bacteria  unclonable  0.00000185636  normal  0.131428 
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  25.59 
 
 
226 aa  58.9  0.00000006  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  26.15 
 
 
242 aa  58.9  0.00000006  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  23.47 
 
 
227 aa  58.9  0.00000007  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_13707  Cpr/FNR family transcriptional regulator  23.81 
 
 
224 aa  58.9  0.00000008  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0333343 
 
 
-
 
NC_008699  Noca_1641  cyclic nucleotide-binding  21.96 
 
 
267 aa  58.5  0.00000009  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  23.81 
 
 
224 aa  58.5  0.0000001  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  24.61 
 
 
225 aa  58.2  0.0000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  22.64 
 
 
225 aa  58.5  0.0000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_012791  Vapar_0997  transcriptional regulator, Crp/Fnr family  25.37 
 
 
230 aa  58.2  0.0000001  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0292  CRP/FNR family transcriptional regulator  26.46 
 
 
224 aa  58.2  0.0000001  Roseiflexus sp. RS-1  Bacteria  normal  0.210312  normal  0.0189188 
 
 
-
 
NC_008699  Noca_1660  Crp/FNR family transcriptional regulator  25 
 
 
261 aa  58.2  0.0000001  Nocardioides sp. JS614  Bacteria  normal  0.74426  n/a   
 
 
-
 
NC_009338  Mflv_4388  CRP/FNR family transcriptional regulator  23.11 
 
 
225 aa  58.2  0.0000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4520  transcriptional regulator, Crp/Fnr family  26.58 
 
 
236 aa  57.4  0.0000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0559  Crp/FNR family transcriptional regulator  25.81 
 
 
225 aa  57.8  0.0000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.338488  normal  0.42035 
 
 
-
 
NC_008609  Ppro_2444  Crp/FNR family transcriptional regulator  23.56 
 
 
238 aa  57.4  0.0000002  Pelobacter propionicus DSM 2379  Bacteria  decreased coverage  0.000577484  n/a   
 
 
-
 
NC_012034  Athe_1171  cyclic nucleotide-binding protein  21.46 
 
 
226 aa  57  0.0000003  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00521884  n/a   
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  22.93 
 
 
236 aa  57  0.0000003  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  22.93 
 
 
236 aa  57  0.0000003  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_008262  CPR_1062  Crp/FNR family transcriptional regulator  21.86 
 
 
236 aa  56.6  0.0000003  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  27.27 
 
 
230 aa  56.6  0.0000004  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_008261  CPF_1250  Crp/FNR family transcriptional regulator  21.86 
 
 
236 aa  56.2  0.0000005  Clostridium perfringens ATCC 13124  Bacteria  normal  0.403908  n/a   
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  23.5 
 
 
243 aa  56.2  0.0000005  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_009484  Acry_1631  CRP/FNR family transcriptional regulator  25.13 
 
 
310 aa  55.8  0.0000005  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_0718  transcriptional regulator, Crp/Fnr family  23.16 
 
 
224 aa  55.8  0.0000006  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_5435  CRP/FNR family transcriptional regulator  22.75 
 
 
224 aa  55.5  0.0000007  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.397858 
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  25.24 
 
 
226 aa  55.5  0.0000008  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_010730  SYO3AOP1_0465  transcriptional regulator, Crp/Fnr family  22.38 
 
 
223 aa  55.1  0.0000009  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00000000196856  n/a   
 
 
-
 
NC_011761  AFE_0270  transcriptional regulator, Crp/Fnr family  23.47 
 
 
233 aa  55.5  0.0000009  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.479827  n/a   
 
 
-
 
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