More than 300 homologs were found in PanDaTox collection
for query gene HY04AAS1_0644 on replicon NC_011126
Organism: Hydrogenobaculum sp. Y04AAS1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011126  HY04AAS1_0644  transcriptional regulator, Crp/Fnr family  100 
 
 
243 aa  492  9.999999999999999e-139  Hydrogenobaculum sp. Y04AAS1  Bacteria  unclonable  0.0000000000000386152  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0394  transcriptional regulator, Crp/Fnr family  53.85 
 
 
237 aa  211  5.999999999999999e-54  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  27.56 
 
 
249 aa  129  4.0000000000000003e-29  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_008699  Noca_1660  Crp/FNR family transcriptional regulator  31.7 
 
 
261 aa  129  5.0000000000000004e-29  Nocardioides sp. JS614  Bacteria  normal  0.74426  n/a   
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  30.14 
 
 
231 aa  118  7e-26  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  31.28 
 
 
231 aa  117  1.9999999999999998e-25  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  31.28 
 
 
231 aa  117  1.9999999999999998e-25  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_0719  transcriptional regulator, Crp/Fnr family  30 
 
 
257 aa  117  1.9999999999999998e-25  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000204419 
 
 
-
 
NC_009668  Oant_3114  CRP/FNR family transcriptional regulator  29.6 
 
 
232 aa  110  1.0000000000000001e-23  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_4381  CRP/FNR family transcriptional regulator  30.21 
 
 
231 aa  110  1.0000000000000001e-23  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  30.95 
 
 
219 aa  108  6e-23  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  30.87 
 
 
236 aa  108  6e-23  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2246  Crp/FNR family transcriptional regulator  28.82 
 
 
233 aa  108  9.000000000000001e-23  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  30.97 
 
 
226 aa  107  1e-22  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  29.78 
 
 
225 aa  104  1e-21  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  30.38 
 
 
236 aa  104  1e-21  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  30.13 
 
 
227 aa  104  2e-21  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008242  Meso_4277  Crp/FNR family transcriptional regulator  26.79 
 
 
234 aa  103  2e-21  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6822  Crp/FNR family transcriptional regulator  29.07 
 
 
239 aa  102  5e-21  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  30.04 
 
 
240 aa  102  8e-21  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_007778  RPB_1465  Crp/FNR family transcriptional regulator  30.9 
 
 
236 aa  101  1e-20  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.342125  normal  0.439299 
 
 
-
 
NC_007964  Nham_2812  Crp/FNR family transcriptional regulator  26.19 
 
 
243 aa  99.4  5e-20  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2020  transcriptional regulator, Crp/Fnr family  30.96 
 
 
239 aa  99  7e-20  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.0424227  n/a   
 
 
-
 
NC_007493  RSP_0327  Crp/FNR family transcriptional regulator  27.11 
 
 
233 aa  98.2  1e-19  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.539351  n/a   
 
 
-
 
NC_009049  Rsph17029_1972  CRP/FNR family transcriptional regulator  27.11 
 
 
233 aa  98.2  1e-19  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009504  BOV_A0257  transcriptional regulator NnrR  27.49 
 
 
232 aa  97.8  1e-19  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0281  transcriptional regulator NnrR  27.49 
 
 
232 aa  97.1  2e-19  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  28.21 
 
 
236 aa  97.4  2e-19  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  27.56 
 
 
225 aa  96.3  4e-19  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_24470  cAMP-binding protein  24.34 
 
 
261 aa  94.7  1e-18  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_2417  cyclic nucleotide-binding protein  24.78 
 
 
250 aa  94.4  2e-18  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.034588  normal  0.0382931 
 
 
-
 
NC_009428  Rsph17025_0968  CRP/FNR family transcriptional regulator  26.87 
 
 
233 aa  94.4  2e-18  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_1523  transcriptional regulator, Crp/Fnr family  27.1 
 
 
231 aa  93.6  2e-18  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  27.78 
 
 
236 aa  94  2e-18  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_009719  Plav_1010  CRP/FNR family transcriptional regulator  28.04 
 
 
257 aa  93.2  3e-18  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3066  cyclic nucleotide-binding  27.62 
 
 
240 aa  93.2  4e-18  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_22000  transcriptional regulator, Crp/Fnr family  25.71 
 
 
235 aa  91.3  1e-17  Azotobacter vinelandii DJ  Bacteria  normal  0.457493  n/a   
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  28.29 
 
 
232 aa  91.7  1e-17  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  27.54 
 
 
236 aa  90.5  2e-17  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  25.86 
 
 
231 aa  90.5  2e-17  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  30.26 
 
 
225 aa  89.7  4e-17  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  27.05 
 
 
236 aa  89.4  5e-17  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  26.98 
 
 
243 aa  87.8  1e-16  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  26.84 
 
 
226 aa  87.4  2e-16  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3071  transcriptional regulator, Crp/Fnr family  25.66 
 
 
224 aa  87.8  2e-16  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00222127  n/a   
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  25.37 
 
 
239 aa  87.4  2e-16  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_009523  RoseRS_0292  CRP/FNR family transcriptional regulator  26.79 
 
 
224 aa  87  3e-16  Roseiflexus sp. RS-1  Bacteria  normal  0.210312  normal  0.0189188 
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  30.32 
 
 
234 aa  86.7  4e-16  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_011887  Mnod_8112  transcriptional regulator, Crp/Fnr family  25 
 
 
229 aa  85.9  5e-16  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  25.99 
 
 
229 aa  85.5  7e-16  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
NC_007778  RPB_3150  Crp/FNR family transcriptional regulator  26.15 
 
 
252 aa  84.7  0.000000000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_0678  transcriptional regulator, Crp/Fnr family  27.75 
 
 
236 aa  84.7  0.000000000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236133  normal 
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  26.84 
 
 
229 aa  84.7  0.000000000000001  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0657  cyclic nucleotide-binding protein  26.48 
 
 
246 aa  84.3  0.000000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.418671  normal  0.417958 
 
 
-
 
NC_009767  Rcas_0252  Crp/FNR family transcriptional regulator  26.34 
 
 
218 aa  84.3  0.000000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  unclonable  0.00000185636  normal  0.131428 
 
 
-
 
NC_008554  Sfum_2941  Crp/FNR family transcriptional regulator  28.1 
 
 
235 aa  84.3  0.000000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_0595  CRP/FNR family transcriptional regulator  24.02 
 
 
228 aa  83.6  0.000000000000003  Roseiflexus sp. RS-1  Bacteria  normal  0.130469  unclonable  0.00000708114 
 
 
-
 
NC_009767  Rcas_3427  Crp/FNR family transcriptional regulator  24.02 
 
 
223 aa  83.6  0.000000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0598833  hitchhiker  0.00496827 
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  25.34 
 
 
227 aa  83.2  0.000000000000003  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_011004  Rpal_0837  transcriptional regulator, Crp/Fnr family  25.7 
 
 
234 aa  83.2  0.000000000000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  25.34 
 
 
227 aa  82.8  0.000000000000005  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  22.63 
 
 
236 aa  82  0.000000000000007  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  25.45 
 
 
231 aa  82  0.000000000000007  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  27.01 
 
 
226 aa  82  0.000000000000008  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3897  Crp/FNR family transcriptional regulator  24.02 
 
 
227 aa  81.6  0.000000000000009  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.280734  normal  0.887061 
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  24.55 
 
 
238 aa  80.5  0.00000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3926  transcriptional regulator, Crp/Fnr family  24.55 
 
 
238 aa  80.5  0.00000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_0106  Crp/FNR family transcriptional regulator  24.89 
 
 
254 aa  80.1  0.00000000000003  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_0860  Crp/FNR family transcriptional regulator  26.4 
 
 
234 aa  80.1  0.00000000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.693979  n/a   
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  28.36 
 
 
247 aa  79.7  0.00000000000004  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_009507  Swit_5204  CRP/FNR family transcriptional regulator  23.92 
 
 
261 aa  79  0.00000000000007  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.26828 
 
 
-
 
NC_008340  Mlg_1070  Crp/FNR family transcriptional regulator  22.57 
 
 
235 aa  78.6  0.00000000000008  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.105875  normal 
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  24.45 
 
 
229 aa  78.2  0.0000000000001  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  21.88 
 
 
231 aa  77.4  0.0000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  22.41 
 
 
226 aa  76.6  0.0000000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  21.97 
 
 
225 aa  76.6  0.0000000000003  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  26.87 
 
 
352 aa  76.3  0.0000000000004  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_011830  Dhaf_3158  transcriptional regulator, Crp/Fnr family  26.47 
 
 
223 aa  76.6  0.0000000000004  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1746  CRP/FNR family transcriptional regulator  26.56 
 
 
236 aa  75.9  0.0000000000005  Xanthobacter autotrophicus Py2  Bacteria  normal  0.753218  normal  0.546792 
 
 
-
 
NC_010338  Caul_0629  transcriptional regulator FixK  28.33 
 
 
215 aa  75.9  0.0000000000006  Caulobacter sp. K31  Bacteria  normal  0.595222  normal  0.236212 
 
 
-
 
NC_011894  Mnod_0422  transcriptional regulator, Crp/Fnr family  22.78 
 
 
246 aa  75.9  0.0000000000006  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0917  CRP/FNR family transcriptional regulator  24.37 
 
 
254 aa  75.1  0.0000000000008  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  22.42 
 
 
227 aa  75.1  0.0000000000009  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  23.7 
 
 
230 aa  75.1  0.000000000001  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  23.71 
 
 
228 aa  75.1  0.000000000001  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2699  Crp/FNR family transcriptional regulator  26.73 
 
 
232 aa  75.1  0.000000000001  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.276502  n/a   
 
 
-
 
NC_009972  Haur_0049  Crp/FNR family transcriptional regulator  22.08 
 
 
252 aa  75.1  0.000000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.422683  n/a   
 
 
-
 
NC_007498  Pcar_1491  Crp/FNR family transcriptional regulator  25 
 
 
224 aa  73.9  0.000000000002  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000413534  n/a   
 
 
-
 
NC_008148  Rxyl_1234  Crp/FNR family transcriptional regulator  25.76 
 
 
232 aa  73.9  0.000000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2444  Crp/FNR family transcriptional regulator  27.27 
 
 
238 aa  73.9  0.000000000002  Pelobacter propionicus DSM 2379  Bacteria  decreased coverage  0.000577484  n/a   
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  24 
 
 
225 aa  73.6  0.000000000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_011831  Cagg_1798  transcriptional regulator, Crp/Fnr family  22.03 
 
 
224 aa  73.6  0.000000000003  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.112724  normal  0.701218 
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  21.89 
 
 
229 aa  73.2  0.000000000004  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_008048  Sala_1678  Crp/FNR family transcriptional regulator  22.12 
 
 
230 aa  73.2  0.000000000004  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.330352  normal 
 
 
-
 
NC_013216  Dtox_1944  transcriptional regulator, Crp/Fnr family  26.91 
 
 
227 aa  72.8  0.000000000004  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_008496  LEUM_A06  Crp-like transcriptional regulator  23.79 
 
 
230 aa  73.2  0.000000000004  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  22.49 
 
 
241 aa  72.8  0.000000000005  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_3455  Crp/FNR family transcriptional regulator  21.68 
 
 
237 aa  72.8  0.000000000005  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.063385 
 
 
-
 
NC_013235  Namu_0718  transcriptional regulator, Crp/Fnr family  24.22 
 
 
224 aa  72.8  0.000000000005  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  23.56 
 
 
225 aa  72.4  0.000000000006  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
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