242 homologs were found in PanDaTox collection
for query gene Acry_1580 on replicon NC_009484
Organism: Acidiphilium cryptum JF-5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009484  Acry_1580  CRP/FNR family transcriptional regulator  100 
 
 
240 aa  469  1.0000000000000001e-131  Acidiphilium cryptum JF-5  Bacteria  normal  0.391426  n/a   
 
 
-
 
NC_011894  Mnod_2132  transcriptional regulator, Crp/Fnr family  47.47 
 
 
293 aa  174  9.999999999999999e-43  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.263338  n/a   
 
 
-
 
NC_010511  M446_6129  Crp/FNR family transcriptional regulator  43.72 
 
 
267 aa  160  2e-38  Methylobacterium sp. 4-46  Bacteria  normal  0.0255629  normal 
 
 
-
 
NC_010505  Mrad2831_2595  Crp/FNR family transcriptional regulator  48.04 
 
 
251 aa  149  3e-35  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.396823  normal 
 
 
-
 
NC_008347  Mmar10_2709  transcriptional activator FtrB  34.23 
 
 
232 aa  124  1e-27  Maricaulis maris MCS10  Bacteria  normal  normal  0.0829617 
 
 
-
 
NC_004311  BRA0301  transcriptional activator FtrB  33.94 
 
 
236 aa  115  5e-25  Brucella suis 1330  Bacteria  normal  0.025844  n/a   
 
 
-
 
NC_009504  BOV_A0277  transcriptional activator FtrB  33.94 
 
 
236 aa  115  5e-25  Brucella ovis ATCC 25840  Bacteria  normal  0.739319  n/a   
 
 
-
 
NC_011666  Msil_1511  transcriptional regulator, Crp/Fnr family  38.1 
 
 
269 aa  112  4.0000000000000004e-24  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_008687  Pden_4238  transcriptional activator FtrB  34.23 
 
 
234 aa  103  3e-21  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.363885 
 
 
-
 
NC_009668  Oant_2889  transcriptional activator FtrB  29.65 
 
 
239 aa  101  1e-20  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.22661  n/a   
 
 
-
 
NC_011004  Rpal_0740  transcriptional regulator, Crp/Fnr family  36.1 
 
 
255 aa  98.6  8e-20  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1012  Crp/FNR family transcriptional regulator  36.59 
 
 
241 aa  96.7  3e-19  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.88102  normal  0.736744 
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  29.96 
 
 
231 aa  91.7  8e-18  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_007958  RPD_1522  cyclic nucleotide-binding  34.33 
 
 
241 aa  91.3  1e-17  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.500349  normal  0.967279 
 
 
-
 
NC_011662  Tmz1t_1286  transcriptional regulator, Crp/Fnr family  31.31 
 
 
227 aa  88.6  8e-17  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_4620  Crp/FNR family transcriptional regulator  30.66 
 
 
237 aa  82.8  0.000000000000004  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.128051 
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  30.26 
 
 
230 aa  82.4  0.000000000000006  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  30.36 
 
 
241 aa  81.6  0.000000000000009  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_3189  transcriptional regulator  32.42 
 
 
236 aa  81.3  0.00000000000001  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  31.43 
 
 
248 aa  81.6  0.00000000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  27.43 
 
 
229 aa  81.6  0.00000000000001  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  28.25 
 
 
236 aa  80.1  0.00000000000003  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  29.63 
 
 
228 aa  78.6  0.00000000000009  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  31.91 
 
 
254 aa  78.2  0.0000000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  29.69 
 
 
229 aa  77.4  0.0000000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_3861  transcriptional activator FtrB  28.11 
 
 
256 aa  76.3  0.0000000000004  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  29.05 
 
 
228 aa  75.1  0.0000000000008  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_010571  Oter_0906  Crp/FNR family transcriptional regulator  30.3 
 
 
238 aa  74.7  0.000000000001  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_2478  CRP/FNR family transcriptional regulator  30.9 
 
 
249 aa  72.4  0.000000000006  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.651433 
 
 
-
 
NC_011662  Tmz1t_2606  transcriptional regulator, Crp/Fnr family  27.27 
 
 
253 aa  71.2  0.00000000001  Thauera sp. MZ1T  Bacteria  normal  0.193309  n/a   
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  27.75 
 
 
229 aa  71.2  0.00000000001  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
NC_009952  Dshi_3191  transcriptional regulator Dnr  28.37 
 
 
227 aa  70.9  0.00000000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  28.17 
 
 
229 aa  70.5  0.00000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_007298  Daro_1036  cyclic nucleotide-binding  26.17 
 
 
245 aa  70.1  0.00000000003  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011206  Lferr_1356  transcriptional regulator, Crp/Fnr family  25.58 
 
 
222 aa  68.9  0.00000000007  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_3466  regulator of Biofilm formation Fnr Family  32.56 
 
 
235 aa  68.9  0.00000000007  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_1658  transcriptional regulator, Crp/Fnr family  25.58 
 
 
222 aa  68.9  0.00000000007  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.365354  n/a   
 
 
-
 
NC_011761  AFE_0857  transcriptional regulator, Crp/Fnr family  27.72 
 
 
229 aa  67.8  0.0000000001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0981  transcriptional regulator, Crp/Fnr family  27.72 
 
 
246 aa  68.6  0.0000000001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0154476 
 
 
-
 
NC_013510  Tcur_0407  transcriptional regulator, Crp/Fnr family  28.38 
 
 
243 aa  68.2  0.0000000001  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_5024  cyclic nucleotide-binding protein  32.09 
 
 
221 aa  68.2  0.0000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.923745  normal 
 
 
-
 
NC_007298  Daro_3198  Crp/FNR family transcriptional regulator  26.87 
 
 
231 aa  67.4  0.0000000002  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_2867  Crp/FNR family transcriptional regulator  27.78 
 
 
241 aa  67.4  0.0000000002  Opitutus terrae PB90-1  Bacteria  normal  0.343371  normal  0.792405 
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  29.86 
 
 
227 aa  67  0.0000000003  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_5927  cyclic nucleotide-binding protein  31.35 
 
 
226 aa  66.6  0.0000000003  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.514964 
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  28.12 
 
 
227 aa  66.2  0.0000000004  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  21.2 
 
 
226 aa  64.7  0.000000001  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  25.11 
 
 
227 aa  64.3  0.000000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  25.11 
 
 
227 aa  64.3  0.000000002  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_006348  BMA0619  cyclic nucleotide-binding domain-containing protein  26.6 
 
 
229 aa  63.2  0.000000003  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2817  cyclic nucleotide-binding domain-containing protein  26.6 
 
 
229 aa  63.2  0.000000003  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1706  cyclic nucleotide-binding protein  26.6 
 
 
230 aa  63.2  0.000000003  Burkholderia mallei NCTC 10247  Bacteria  normal  0.450772  n/a   
 
 
-
 
NC_009076  BURPS1106A_2752  cyclic nucleotide-binding protein  26.6 
 
 
230 aa  63.2  0.000000003  Burkholderia pseudomallei 1106a  Bacteria  normal  0.339389  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2392  cyclic nucleotide-binding domain-containing protein  26.6 
 
 
230 aa  63.2  0.000000003  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2895  cyclic nucleotide-binding domain-containing protein  26.6 
 
 
230 aa  63.2  0.000000003  Burkholderia mallei NCTC 10229  Bacteria  normal  0.869141  n/a   
 
 
-
 
NC_009074  BURPS668_2695  cyclic nucleotide-binding protein  26.6 
 
 
229 aa  63.2  0.000000003  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1801  cyclic nucleotide-binding domain-containing protein  26.6 
 
 
229 aa  63.2  0.000000004  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1669  Crp/FNR family transcriptional regulator  23.21 
 
 
233 aa  62.8  0.000000005  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1619  cyclic nucleotide-binding  29.73 
 
 
235 aa  62.8  0.000000005  Nocardioides sp. JS614  Bacteria  normal  0.146026  n/a   
 
 
-
 
NC_007954  Sden_3444  cyclic nucleotide-binding  25.58 
 
 
250 aa  62.4  0.000000006  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_4954  transcriptional regulator, Crp/Fnr family  27.06 
 
 
223 aa  62.4  0.000000007  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  hitchhiker  0.00163752  normal 
 
 
-
 
NC_003296  RS02297  transcription regulator protein  24.67 
 
 
225 aa  62  0.000000008  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.419231 
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  26.57 
 
 
226 aa  62  0.000000008  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  26.27 
 
 
227 aa  61.6  0.00000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_007643  Rru_A2636  Crp/FNR family transcriptional regulator  28.96 
 
 
234 aa  61.6  0.00000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_3735  transcriptional regulator, Crp/Fnr family  27.38 
 
 
210 aa  61.6  0.00000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008825  Mpe_A1691  CRP/FNR family transcriptional regulator  27.49 
 
 
232 aa  61.2  0.00000001  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00272653  normal  0.637065 
 
 
-
 
NC_012850  Rleg_3301  transcriptional regulator, Crp/Fnr family  25 
 
 
227 aa  60.1  0.00000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.306356 
 
 
-
 
NC_009767  Rcas_3427  Crp/FNR family transcriptional regulator  29.36 
 
 
223 aa  60.1  0.00000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0598833  hitchhiker  0.00496827 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  25.26 
 
 
228 aa  60.1  0.00000003  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4660  transcriptional regulator, Crp/Fnr family  24.89 
 
 
225 aa  59.7  0.00000004  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_3583  transcriptional regulator, Crp/Fnr family  24.89 
 
 
225 aa  59.7  0.00000004  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  27.4 
 
 
234 aa  59.3  0.00000005  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_008148  Rxyl_2796  Crp/FNR family transcriptional regulator  28.81 
 
 
250 aa  58.9  0.00000006  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3322  cyclic nucleotide-binding  28.77 
 
 
495 aa  58.5  0.00000009  Dechloromonas aromatica RCB  Bacteria  normal  hitchhiker  0.000319874 
 
 
-
 
NC_009636  Smed_2376  CRP/FNR family transcriptional regulator  27.23 
 
 
226 aa  58.2  0.0000001  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.253524 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  23.68 
 
 
225 aa  58.2  0.0000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  26.94 
 
 
224 aa  57.4  0.0000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2635  Crp/FNR family transcriptional regulator  32.42 
 
 
252 aa  56.6  0.0000003  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.545323  n/a   
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  25.38 
 
 
225 aa  56.6  0.0000003  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0079  Crp/FNR family transcriptional regulator  23.5 
 
 
225 aa  55.8  0.0000005  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.849443  normal  0.162256 
 
 
-
 
NC_010815  Glov_3725  transcriptional regulator, Crp/Fnr family  26.98 
 
 
237 aa  55.8  0.0000006  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.0054318  normal  0.342144 
 
 
-
 
NC_008740  Maqu_3081  CRP/FNR family transcriptional regulator  23.04 
 
 
249 aa  55.8  0.0000006  Marinobacter aquaeolei VT8  Bacteria  normal  0.0390484  n/a   
 
 
-
 
NC_009504  BOV_A0257  transcriptional regulator NnrR  25.6 
 
 
232 aa  55.5  0.0000007  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0465  transcriptional regulator, Crp/Fnr family  20.91 
 
 
223 aa  55.1  0.0000009  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00000000196856  n/a   
 
 
-
 
NC_013216  Dtox_1944  transcriptional regulator, Crp/Fnr family  22.17 
 
 
227 aa  54.7  0.000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3277  Crp/FNR family transcriptional regulator  37.5 
 
 
226 aa  54.7  0.000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  24.87 
 
 
225 aa  55.1  0.000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_009719  Plav_1010  CRP/FNR family transcriptional regulator  24.51 
 
 
257 aa  53.9  0.000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_20120  cAMP-binding protein  29.11 
 
 
223 aa  53.9  0.000002  Kytococcus sedentarius DSM 20547  Bacteria  hitchhiker  0.00290987  normal  0.0142715 
 
 
-
 
NC_007958  RPD_3066  cyclic nucleotide-binding  26.5 
 
 
240 aa  53.9  0.000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  24.29 
 
 
231 aa  54.3  0.000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  17.89 
 
 
225 aa  54.3  0.000002  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1660  Crp/FNR family transcriptional regulator  29.38 
 
 
261 aa  53.5  0.000003  Nocardioides sp. JS614  Bacteria  normal  0.74426  n/a   
 
 
-
 
NC_009441  Fjoh_4447  CRP/FNR family transcriptional regulator  20.53 
 
 
227 aa  53.1  0.000004  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_4014  transcriptional regulator, Crp/Fnr family  27.57 
 
 
233 aa  53.1  0.000004  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_2706  Crp/FNR family transcriptional regulator  25.12 
 
 
228 aa  53.1  0.000004  Sphingomonas wittichii RW1  Bacteria  normal  0.154877  normal 
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  23.65 
 
 
352 aa  53.1  0.000004  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  25.23 
 
 
243 aa  53.1  0.000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_012791  Vapar_1284  transcriptional regulator, Crp/Fnr family  22.86 
 
 
224 aa  52.8  0.000004  Variovorax paradoxus S110  Bacteria  normal  0.304913  n/a   
 
 
-
 
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