More than 300 homologs were found in PanDaTox collection
for query gene Sala_1678 on replicon NC_008048
Organism: Sphingopyxis alaskensis RB2256



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008048  Sala_1678  Crp/FNR family transcriptional regulator  100 
 
 
230 aa  470  1e-132  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.330352  normal 
 
 
-
 
NC_007794  Saro_2581  Crp/FNR family transcriptional regulator  62.77 
 
 
231 aa  302  3.0000000000000004e-81  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.658135  n/a   
 
 
-
 
NC_009511  Swit_1945  Crp/FNR family transcriptional regulator  56.16 
 
 
242 aa  247  9e-65  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0698  Crp-Fnr regulatory protein (FnrL)  42.73 
 
 
248 aa  194  1e-48  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2353  CRP/FNR family transcriptional regulator  42.73 
 
 
248 aa  194  1e-48  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.689366  normal  0.139893 
 
 
-
 
NC_007802  Jann_3858  Crp/FNR family transcriptional regulator  43.81 
 
 
248 aa  192  3e-48  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2360  transcriptional regulator, Crp/Fnr family  42.54 
 
 
240 aa  192  3e-48  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.948966  hitchhiker  0.00636029 
 
 
-
 
NC_011989  Avi_2026  transcriptional activator Crp family  42.36 
 
 
241 aa  192  4e-48  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0532  CRP/FNR family transcriptional regulator  41.85 
 
 
248 aa  192  5e-48  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.283437 
 
 
-
 
NC_009952  Dshi_0660  transcriptional regulator  42.11 
 
 
249 aa  189  4e-47  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_2118  transcriptional regulator, Crp/Fnr family  43.5 
 
 
240 aa  188  5e-47  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  hitchhiker  0.00291012 
 
 
-
 
NC_007964  Nham_1258  Crp/FNR family transcriptional regulator  44.49 
 
 
241 aa  183  3e-45  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_2547  Crp/FNR family transcriptional regulator  40.43 
 
 
246 aa  178  4.999999999999999e-44  Ruegeria sp. TM1040  Bacteria  normal  0.389339  normal  0.365128 
 
 
-
 
NC_007406  Nwi_2061  Crp family transcriptional regulator  43.17 
 
 
241 aa  178  7e-44  Nitrobacter winogradskyi Nb-255  Bacteria  hitchhiker  0.00300081  normal 
 
 
-
 
NC_009636  Smed_1742  CRP/FNR family transcriptional regulator  41.28 
 
 
242 aa  172  2.9999999999999996e-42  Sinorhizobium medicae WSM419  Bacteria  normal  0.275504  normal  0.265558 
 
 
-
 
NC_008686  Pden_1850  CRP/FNR family transcriptional regulator  41.71 
 
 
211 aa  155  4e-37  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_5746  Crp/FNR family transcriptional regulator  38.1 
 
 
237 aa  141  9e-33  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.765257  normal 
 
 
-
 
NC_010172  Mext_1357  cyclic nucleotide-binding  39.52 
 
 
250 aa  137  2e-31  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.395788 
 
 
-
 
NC_011757  Mchl_1557  transcriptional regulator, Crp/Fnr family  39.05 
 
 
250 aa  135  5e-31  Methylobacterium chloromethanicum CM4  Bacteria  decreased coverage  0.00717235  normal 
 
 
-
 
NC_010511  M446_0946  Crp/FNR family transcriptional regulator  38.35 
 
 
253 aa  134  8e-31  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  normal 
 
 
-
 
NC_010725  Mpop_1302  transcriptional regulator, Crp/Fnr family  40 
 
 
254 aa  134  9.999999999999999e-31  Methylobacterium populi BJ001  Bacteria  normal  0.0109091  normal 
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  36.28 
 
 
262 aa  134  9.999999999999999e-31  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_011894  Mnod_0422  transcriptional regulator, Crp/Fnr family  39.62 
 
 
246 aa  132  3.9999999999999996e-30  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6132  Crp/FNR family transcriptional regulator  38.79 
 
 
245 aa  130  1.0000000000000001e-29  Methylobacterium sp. 4-46  Bacteria  normal  0.0884478  normal 
 
 
-
 
NC_011894  Mnod_3926  transcriptional regulator, Crp/Fnr family  36.12 
 
 
238 aa  131  1.0000000000000001e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  36.12 
 
 
238 aa  131  1.0000000000000001e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_1631  CRP/FNR family transcriptional regulator  36.73 
 
 
310 aa  130  1.0000000000000001e-29  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_1752  transcriptional regulator, Crp/Fnr family  37.72 
 
 
250 aa  129  4.0000000000000003e-29  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.103124 
 
 
-
 
NC_009667  Oant_2634  CRP/FNR family transcriptional regulator  33.92 
 
 
249 aa  127  1.0000000000000001e-28  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0654  Crp/FNR family transcriptional regulator  33.92 
 
 
248 aa  127  2.0000000000000002e-28  Brucella suis 1330  Bacteria  normal  0.48838  n/a   
 
 
-
 
NC_007925  RPC_4039  Crp/FNR family transcriptional regulator  37.68 
 
 
239 aa  125  4.0000000000000003e-28  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.70749  normal 
 
 
-
 
NC_007778  RPB_1377  Crp/FNR family transcriptional regulator  37.62 
 
 
239 aa  124  9e-28  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1357  Crp/Fnr family transcriptional regulator  38.1 
 
 
239 aa  124  1e-27  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009505  BOV_0647  nitrogen fixation regulation protein fixk  33.48 
 
 
251 aa  123  2e-27  Brucella ovis ATCC 25840  Bacteria  normal  0.774151  n/a   
 
 
-
 
NC_008254  Meso_2279  Crp/FNR family transcriptional regulator  33.19 
 
 
258 aa  123  2e-27  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4713  transcriptional regulator, Crp/Fnr family  37.14 
 
 
239 aa  123  3e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.557049  n/a   
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  37.06 
 
 
222 aa  122  6e-27  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_1230  CRP/FNR family transcriptional regulator  33.66 
 
 
263 aa  120  1.9999999999999998e-26  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_2572  crpK, Fnr-type transcriptional regulator  33.66 
 
 
263 aa  120  1.9999999999999998e-26  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_1951  CRP/FNR family transcriptional regulator  34.31 
 
 
263 aa  118  9e-26  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_0629  transcriptional regulator FixK  34.15 
 
 
215 aa  116  3.9999999999999997e-25  Caulobacter sp. K31  Bacteria  normal  0.595222  normal  0.236212 
 
 
-
 
NC_009719  Plav_2039  CRP/FNR family transcriptional regulator  35.86 
 
 
242 aa  114  8.999999999999998e-25  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191538  hitchhiker  0.00387918 
 
 
-
 
NC_010505  Mrad2831_3277  Crp/FNR family transcriptional regulator  33.67 
 
 
226 aa  111  9e-24  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_1984  transcriptional regulator, Crp/Fnr family  32.16 
 
 
250 aa  111  9e-24  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.312779  normal 
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  30.87 
 
 
254 aa  106  2e-22  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_2457  Crp/FNR family transcriptional regulator  34.16 
 
 
204 aa  106  3e-22  Caulobacter sp. K31  Bacteria  normal  0.325923  normal  0.600278 
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  28.57 
 
 
236 aa  105  5e-22  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_007964  Nham_1951  transcriptional regulator FixK  34.05 
 
 
231 aa  105  7e-22  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  28.57 
 
 
236 aa  105  8e-22  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_009429  Rsph17025_3610  hypothetical protein  32.99 
 
 
231 aa  104  9e-22  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_0408  Crp/FNR family transcriptional regulator  36.31 
 
 
230 aa  104  9e-22  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2786  transcriptional regulator FixK  32.67 
 
 
229 aa  104  1e-21  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0460697  normal  0.11454 
 
 
-
 
NC_010172  Mext_3505  regulatory protein Crp  35.59 
 
 
229 aa  103  2e-21  Methylobacterium extorquens PA1  Bacteria  normal  0.021842  normal 
 
 
-
 
NC_010524  Lcho_2772  Crp/FNR family transcriptional regulator  29.65 
 
 
245 aa  103  2e-21  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00275745 
 
 
-
 
NC_007925  RPC_4055  transcriptional regulator FixK  33.16 
 
 
229 aa  103  2e-21  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1170  Crp/FNR family transcriptional regulator  31.34 
 
 
274 aa  103  2e-21  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3812  transcriptional regulator, Crp/Fnr family  35.59 
 
 
229 aa  103  2e-21  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  26.92 
 
 
236 aa  102  4e-21  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_007778  RPB_2158  Crp/FNR family transcriptional regulator  32.65 
 
 
208 aa  102  5e-21  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.198273  normal  0.103025 
 
 
-
 
NC_009720  Xaut_1746  CRP/FNR family transcriptional regulator  37.21 
 
 
236 aa  102  5e-21  Xanthobacter autotrophicus Py2  Bacteria  normal  0.753218  normal  0.546792 
 
 
-
 
NC_007973  Rmet_2037  Crp/FNR family transcriptional regulator  29.91 
 
 
232 aa  102  6e-21  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.441781 
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  26.61 
 
 
236 aa  102  6e-21  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_003910  CPS_1987  fumarate/nitrate reduction transcriptional regulator  29.67 
 
 
239 aa  101  1e-20  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4729  transcriptional regulator FixK  31.19 
 
 
230 aa  101  1e-20  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2233  CRP/FNR family transcriptional regulator  28.88 
 
 
253 aa  101  1e-20  Marinomonas sp. MWYL1  Bacteria  normal  0.0375344  normal  0.791743 
 
 
-
 
NC_007406  Nwi_1036  transcriptional regulator FixK  34.59 
 
 
231 aa  100  2e-20  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A2034  cyclic nucleotide-binding: regulatory protein, Crp  29.13 
 
 
232 aa  99.8  3e-20  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0787  transcriptional regulator, Crp/Fnr family  30.43 
 
 
243 aa  99.4  4e-20  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_5386  transcriptional regulator, Crp/Fnr family  33.92 
 
 
230 aa  99.4  4e-20  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.662421  n/a   
 
 
-
 
NC_013456  VEA_003475  fumarate and nitrate reduction regulatory protein  29.57 
 
 
248 aa  99  5e-20  Vibrio sp. Ex25  Bacteria  normal  0.292896  n/a   
 
 
-
 
NC_009439  Pmen_2615  CRP/FNR family transcriptional regulator  29.74 
 
 
244 aa  99.4  5e-20  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00240538  normal  0.855877 
 
 
-
 
NC_011312  VSAL_I1571  fumarate/nitrate reduction transcriptional regulator  29.13 
 
 
250 aa  99  6e-20  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.75505  n/a   
 
 
-
 
CP001637  EcDH1_2311  transcriptional regulator, Crp/Fnr family  29.57 
 
 
250 aa  98.6  7e-20  Escherichia coli DH1  Bacteria  normal  0.144598  n/a   
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  29.57 
 
 
250 aa  98.6  7e-20  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
NC_009801  EcE24377A_1546  fumarate/nitrate reduction transcriptional regulator  29.57 
 
 
250 aa  98.6  7e-20  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E1575  fumarate/nitrate reduction transcriptional regulator  29.57 
 
 
250 aa  98.6  7e-20  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2291  fumarate/nitrate reduction transcriptional regulator  29.57 
 
 
250 aa  98.6  7e-20  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  29.57 
 
 
250 aa  98.6  7e-20  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_4265  transcriptional regulator Anr  29.74 
 
 
244 aa  97.4  1e-19  Pseudomonas putida KT2440  Bacteria  normal  0.880812  normal 
 
 
-
 
NC_012560  Avin_19910  Fnr-like negative transcriptional regulator of CydAB  29 
 
 
244 aa  97.8  1e-19  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C1845  fumarate/nitrate reduction transcriptional regulator  29.57 
 
 
250 aa  97.8  1e-19  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.918423  normal 
 
 
-
 
NC_011205  SeD_A1673  fumarate/nitrate reduction transcriptional regulator  29.57 
 
 
250 aa  97.8  1e-19  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.349784  normal  0.0983377 
 
 
-
 
NC_009783  VIBHAR_02295  fumarate/nitrate reduction transcriptional regulator  29.13 
 
 
248 aa  97.8  1e-19  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011149  SeAg_B1491  fumarate/nitrate reduction transcriptional regulator  29.57 
 
 
250 aa  97.8  1e-19  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0202312  n/a   
 
 
-
 
NC_009512  Pput_1603  CRP/FNR family transcriptional regulator  29.74 
 
 
244 aa  97.4  1e-19  Pseudomonas putida F1  Bacteria  normal  normal  0.138297 
 
 
-
 
NC_011080  SNSL254_A1783  fumarate/nitrate reduction transcriptional regulator  29.57 
 
 
250 aa  97.8  1e-19  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.251439 
 
 
-
 
NC_010465  YPK_1944  fumarate/nitrate reduction transcriptional regulator  28.26 
 
 
250 aa  98.2  1e-19  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.755264  n/a   
 
 
-
 
NC_010501  PputW619_3583  Crp/FNR family transcriptional regulator  29.74 
 
 
244 aa  97.8  1e-19  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A1785  fumarate/nitrate reduction transcriptional regulator  29.57 
 
 
250 aa  97.8  1e-19  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.377507  normal  0.141635 
 
 
-
 
NC_009457  VC0395_A1045  fumarate/nitrate reduction transcriptional regulator  28.7 
 
 
250 aa  97.8  1e-19  Vibrio cholerae O395  Bacteria  normal  0.18077  n/a   
 
 
-
 
NC_007964  Nham_0870  transcriptional regulator FixK  33.33 
 
 
227 aa  97.8  1e-19  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2293  fumarate/nitrate reduction transcriptional regulator  28.26 
 
 
250 aa  97.8  1e-19  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_3830  Crp/FNR family transcriptional regulator  29.74 
 
 
244 aa  97.8  1e-19  Pseudomonas putida GB-1  Bacteria  normal  normal  0.525453 
 
 
-
 
NC_009708  YpsIP31758_1833  fumarate/nitrate reduction transcriptional regulator  28.26 
 
 
250 aa  98.2  1e-19  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0037  Crp/FNR family transcriptional regulator  29.63 
 
 
251 aa  97.1  2e-19  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0031  Crp/FNR family transcriptional regulator  29.63 
 
 
251 aa  97.1  2e-19  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1361  transcriptional regulator FixK  32.43 
 
 
229 aa  97.1  2e-19  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0646149  normal 
 
 
-
 
NC_009075  BURPS668_A0051  cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases  29.63 
 
 
251 aa  97.1  2e-19  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1464  Crp/FNR family transcriptional regulator  29.63 
 
 
251 aa  97.1  2e-19  Burkholderia mallei NCTC 10229  Bacteria  normal  0.855917  n/a   
 
 
-
 
NC_010531  Pnec_1356  transcriptional regulator, Crp/Fnr family  28.45 
 
 
256 aa  97.4  2e-19  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0588975 
 
 
-
 
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