More than 300 homologs were found in PanDaTox collection
for query gene Nwi_2061 on replicon NC_007406
Organism: Nitrobacter winogradskyi Nb-255



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007406  Nwi_2061  Crp family transcriptional regulator  100 
 
 
241 aa  495  1e-139  Nitrobacter winogradskyi Nb-255  Bacteria  hitchhiker  0.00300081  normal 
 
 
-
 
NC_007964  Nham_1258  Crp/FNR family transcriptional regulator  91.29 
 
 
241 aa  455  1e-127  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_2118  transcriptional regulator, Crp/Fnr family  48.74 
 
 
240 aa  233  2.0000000000000002e-60  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  hitchhiker  0.00291012 
 
 
-
 
NC_012850  Rleg_2360  transcriptional regulator, Crp/Fnr family  48.31 
 
 
240 aa  229  4e-59  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.948966  hitchhiker  0.00636029 
 
 
-
 
NC_011989  Avi_2026  transcriptional activator Crp family  45.08 
 
 
241 aa  228  6e-59  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_1742  CRP/FNR family transcriptional regulator  40.42 
 
 
242 aa  184  1.0000000000000001e-45  Sinorhizobium medicae WSM419  Bacteria  normal  0.275504  normal  0.265558 
 
 
-
 
NC_008048  Sala_1678  Crp/FNR family transcriptional regulator  43.17 
 
 
230 aa  178  7e-44  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.330352  normal 
 
 
-
 
NC_007802  Jann_3858  Crp/FNR family transcriptional regulator  40.26 
 
 
248 aa  169  3e-41  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0698  Crp-Fnr regulatory protein (FnrL)  38.3 
 
 
248 aa  167  1e-40  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2353  CRP/FNR family transcriptional regulator  38.3 
 
 
248 aa  167  1e-40  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.689366  normal  0.139893 
 
 
-
 
NC_007794  Saro_2581  Crp/FNR family transcriptional regulator  40.35 
 
 
231 aa  167  2e-40  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.658135  n/a   
 
 
-
 
NC_008044  TM1040_2547  Crp/FNR family transcriptional regulator  38.79 
 
 
246 aa  165  5.9999999999999996e-40  Ruegeria sp. TM1040  Bacteria  normal  0.389339  normal  0.365128 
 
 
-
 
NC_009428  Rsph17025_0532  CRP/FNR family transcriptional regulator  38.3 
 
 
248 aa  163  2.0000000000000002e-39  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.283437 
 
 
-
 
NC_009511  Swit_1945  Crp/FNR family transcriptional regulator  38.99 
 
 
242 aa  155  4e-37  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0660  transcriptional regulator  34.76 
 
 
249 aa  151  8.999999999999999e-36  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_1631  CRP/FNR family transcriptional regulator  40.34 
 
 
310 aa  150  1e-35  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_1850  CRP/FNR family transcriptional regulator  37.56 
 
 
211 aa  132  6.999999999999999e-30  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_1984  transcriptional regulator, Crp/Fnr family  34.36 
 
 
250 aa  130  2.0000000000000002e-29  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.312779  normal 
 
 
-
 
NC_011894  Mnod_0422  transcriptional regulator, Crp/Fnr family  36.28 
 
 
246 aa  125  6e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_5746  Crp/FNR family transcriptional regulator  33.33 
 
 
237 aa  122  5e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.765257  normal 
 
 
-
 
NC_010172  Mext_1357  cyclic nucleotide-binding  33.78 
 
 
250 aa  120  3e-26  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.395788 
 
 
-
 
NC_010725  Mpop_1302  transcriptional regulator, Crp/Fnr family  34.08 
 
 
254 aa  119  3.9999999999999996e-26  Methylobacterium populi BJ001  Bacteria  normal  0.0109091  normal 
 
 
-
 
NC_011757  Mchl_1557  transcriptional regulator, Crp/Fnr family  33.33 
 
 
250 aa  119  6e-26  Methylobacterium chloromethanicum CM4  Bacteria  decreased coverage  0.00717235  normal 
 
 
-
 
NC_007958  RPD_1357  Crp/Fnr family transcriptional regulator  34.11 
 
 
239 aa  117  1.9999999999999998e-25  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1377  Crp/FNR family transcriptional regulator  34.31 
 
 
239 aa  115  5e-25  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6132  Crp/FNR family transcriptional regulator  33.33 
 
 
245 aa  114  1.0000000000000001e-24  Methylobacterium sp. 4-46  Bacteria  normal  0.0884478  normal 
 
 
-
 
NC_007493  RSP_2572  crpK, Fnr-type transcriptional regulator  27.66 
 
 
263 aa  112  4.0000000000000004e-24  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1230  CRP/FNR family transcriptional regulator  27.66 
 
 
263 aa  112  4.0000000000000004e-24  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_1951  CRP/FNR family transcriptional regulator  28.14 
 
 
263 aa  111  8.000000000000001e-24  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR0654  Crp/FNR family transcriptional regulator  28.95 
 
 
248 aa  111  9e-24  Brucella suis 1330  Bacteria  normal  0.48838  n/a   
 
 
-
 
NC_011004  Rpal_4713  transcriptional regulator, Crp/Fnr family  32.14 
 
 
239 aa  111  1.0000000000000001e-23  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.557049  n/a   
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  31.25 
 
 
262 aa  110  2.0000000000000002e-23  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_010511  M446_0946  Crp/FNR family transcriptional regulator  33.82 
 
 
253 aa  110  2.0000000000000002e-23  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  normal 
 
 
-
 
NC_007925  RPC_4039  Crp/FNR family transcriptional regulator  32.84 
 
 
239 aa  109  4.0000000000000004e-23  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.70749  normal 
 
 
-
 
NC_009667  Oant_2634  CRP/FNR family transcriptional regulator  29.07 
 
 
249 aa  107  2e-22  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0647  nitrogen fixation regulation protein fixk  28.63 
 
 
251 aa  107  2e-22  Brucella ovis ATCC 25840  Bacteria  normal  0.774151  n/a   
 
 
-
 
NC_008254  Meso_2279  Crp/FNR family transcriptional regulator  31.71 
 
 
258 aa  105  5e-22  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_1752  transcriptional regulator, Crp/Fnr family  31.6 
 
 
250 aa  102  8e-21  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.103124 
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  30.09 
 
 
238 aa  100  2e-20  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3926  transcriptional regulator, Crp/Fnr family  30.09 
 
 
238 aa  100  2e-20  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2233  CRP/FNR family transcriptional regulator  28.15 
 
 
253 aa  98.6  9e-20  Marinomonas sp. MWYL1  Bacteria  normal  0.0375344  normal  0.791743 
 
 
-
 
NC_009719  Plav_2039  CRP/FNR family transcriptional regulator  34.48 
 
 
242 aa  98.2  1e-19  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191538  hitchhiker  0.00387918 
 
 
-
 
NC_008789  Hhal_0917  CRP/FNR family transcriptional regulator  29.07 
 
 
254 aa  96.3  4e-19  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1987  fumarate/nitrate reduction transcriptional regulator  26.32 
 
 
239 aa  95.5  6e-19  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  34.32 
 
 
222 aa  95.1  8e-19  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_0460  CRP/FNR family transcriptional regulator  30.35 
 
 
256 aa  95.1  9e-19  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1170  Crp/FNR family transcriptional regulator  29.91 
 
 
274 aa  95.1  9e-19  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc1283  putative fumarate and nitrate reduction regulatory transcription regulator protein  28.14 
 
 
242 aa  94.4  2e-18  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0516193  normal  0.32826 
 
 
-
 
NC_007614  Nmul_A1773  Crp/FNR family transcriptional regulator  28.87 
 
 
263 aa  94  2e-18  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0787  transcriptional regulator, Crp/Fnr family  28.07 
 
 
243 aa  93.6  3e-18  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  25.88 
 
 
250 aa  92.8  4e-18  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_007973  Rmet_2037  Crp/FNR family transcriptional regulator  30.77 
 
 
232 aa  92.8  4e-18  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.441781 
 
 
-
 
NC_007954  Sden_1843  fumarate/nitrate reduction transcriptional regulator  26.96 
 
 
250 aa  92.8  5e-18  Shewanella denitrificans OS217  Bacteria  normal  0.0177159  n/a   
 
 
-
 
NC_004578  PSPTO_1666  transcriptional regulator, Crp/Fnr family  29.07 
 
 
250 aa  91.3  1e-17  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0506299  n/a   
 
 
-
 
NC_012917  PC1_2105  fumarate/nitrate reduction transcriptional regulator  27.63 
 
 
248 aa  91.7  1e-17  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0944449  n/a   
 
 
-
 
NC_009831  Ssed_2219  fumarate/nitrate reduction transcriptional regulator  26.32 
 
 
249 aa  90.5  2e-17  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_2398  fumarate/nitrate reduction transcriptional regulator  27.19 
 
 
248 aa  90.9  2e-17  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2311  transcriptional regulator, Crp/Fnr family  27.19 
 
 
250 aa  90.1  3e-17  Escherichia coli DH1  Bacteria  normal  0.144598  n/a   
 
 
-
 
NC_002947  PP_4265  transcriptional regulator Anr  30.26 
 
 
244 aa  90.1  3e-17  Pseudomonas putida KT2440  Bacteria  normal  0.880812  normal 
 
 
-
 
NC_009801  EcE24377A_1546  fumarate/nitrate reduction transcriptional regulator  27.19 
 
 
250 aa  90.1  3e-17  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E1575  fumarate/nitrate reduction transcriptional regulator  27.19 
 
 
250 aa  90.1  3e-17  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010531  Pnec_1356  transcriptional regulator, Crp/Fnr family  29.35 
 
 
256 aa  90.1  3e-17  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0588975 
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  27.19 
 
 
250 aa  90.1  3e-17  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
NC_010682  Rpic_1111  transcriptional regulator, Crp/Fnr family  29.74 
 
 
242 aa  89.7  3e-17  Ralstonia pickettii 12J  Bacteria  normal  0.700786  normal  0.531022 
 
 
-
 
NC_010159  YpAngola_A2293  fumarate/nitrate reduction transcriptional regulator  26.75 
 
 
250 aa  90.1  3e-17  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_1944  fumarate/nitrate reduction transcriptional regulator  26.75 
 
 
250 aa  89.7  3e-17  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.755264  n/a   
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  27.19 
 
 
250 aa  90.1  3e-17  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2417  fumarate/nitrate reduction transcriptional regulator  26.32 
 
 
249 aa  89.7  3e-17  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0646393  decreased coverage  0.000000159166 
 
 
-
 
NC_009708  YpsIP31758_1833  fumarate/nitrate reduction transcriptional regulator  26.75 
 
 
250 aa  89.7  3e-17  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2291  fumarate/nitrate reduction transcriptional regulator  27.19 
 
 
250 aa  90.1  3e-17  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1204  transcriptional regulator, Crp/Fnr family  29.74 
 
 
242 aa  90.1  3e-17  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1603  CRP/FNR family transcriptional regulator  30.26 
 
 
244 aa  90.1  3e-17  Pseudomonas putida F1  Bacteria  normal  normal  0.138297 
 
 
-
 
NC_012560  Avin_19910  Fnr-like negative transcriptional regulator of CydAB  28.14 
 
 
244 aa  89.4  4e-17  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_4486  Crp/FNR family transcriptional regulator  29.07 
 
 
248 aa  89.7  4e-17  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A1045  fumarate/nitrate reduction transcriptional regulator  27.19 
 
 
250 aa  89.4  5e-17  Vibrio cholerae O395  Bacteria  normal  0.18077  n/a   
 
 
-
 
NC_010322  PputGB1_3830  Crp/FNR family transcriptional regulator  29.82 
 
 
244 aa  88.6  7e-17  Pseudomonas putida GB-1  Bacteria  normal  normal  0.525453 
 
 
-
 
NC_012912  Dd1591_2081  fumarate/nitrate reduction transcriptional regulator  26.75 
 
 
250 aa  89  7e-17  Dickeya zeae Ech1591  Bacteria  normal  0.0488524  n/a   
 
 
-
 
NC_007964  Nham_0870  transcriptional regulator FixK  35.15 
 
 
227 aa  88.6  7e-17  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_1981  fumarate/nitrate reduction transcriptional regulator  26.75 
 
 
250 aa  88.6  8e-17  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.320226 
 
 
-
 
NC_007511  Bcep18194_B3138  Crp/FNR family transcriptional regulator  28.63 
 
 
248 aa  88.2  9e-17  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_3583  Crp/FNR family transcriptional regulator  29.82 
 
 
244 aa  88.6  9e-17  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1864  fumarate/nitrate reduction transcriptional regulator  27.16 
 
 
250 aa  88.2  9e-17  Dickeya dadantii Ech703  Bacteria  normal  0.856056  n/a   
 
 
-
 
NC_011149  SeAg_B1491  fumarate/nitrate reduction transcriptional regulator  26.75 
 
 
250 aa  87.8  1e-16  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0202312  n/a   
 
 
-
 
NC_011080  SNSL254_A1783  fumarate/nitrate reduction transcriptional regulator  26.75 
 
 
250 aa  87.8  1e-16  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.251439 
 
 
-
 
NC_009783  VIBHAR_02295  fumarate/nitrate reduction transcriptional regulator  26.75 
 
 
248 aa  87.8  1e-16  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011205  SeD_A1673  fumarate/nitrate reduction transcriptional regulator  26.75 
 
 
250 aa  87.8  1e-16  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.349784  normal  0.0983377 
 
 
-
 
NC_011094  SeSA_A1785  fumarate/nitrate reduction transcriptional regulator  26.75 
 
 
250 aa  87.8  1e-16  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.377507  normal  0.141635 
 
 
-
 
NC_011083  SeHA_C1845  fumarate/nitrate reduction transcriptional regulator  26.75 
 
 
250 aa  87.8  1e-16  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.918423  normal 
 
 
-
 
NC_008700  Sama_1799  fumarate/nitrate reduction transcriptional regulator  25.88 
 
 
250 aa  87  2e-16  Shewanella amazonensis SB2B  Bacteria  normal  0.417815  normal  0.180258 
 
 
-
 
NC_009720  Xaut_1746  CRP/FNR family transcriptional regulator  33.14 
 
 
236 aa  87.4  2e-16  Xanthobacter autotrophicus Py2  Bacteria  normal  0.753218  normal  0.546792 
 
 
-
 
NC_008825  Mpe_A2201  transcriptional regulator  29.29 
 
 
262 aa  87.4  2e-16  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.586423 
 
 
-
 
NC_009092  Shew_1993  fumarate/nitrate reduction transcriptional regulator  25.44 
 
 
249 aa  87  2e-16  Shewanella loihica PV-4  Bacteria  normal  0.238952  normal 
 
 
-
 
NC_009436  Ent638_1853  fumarate/nitrate reduction transcriptional regulator  27.19 
 
 
250 aa  87.4  2e-16  Enterobacter sp. 638  Bacteria  normal  normal  0.755428 
 
 
-
 
NC_009656  PSPA7_3788  transcriptional regulator Anr  29.38 
 
 
244 aa  87  2e-16  Pseudomonas aeruginosa PA7  Bacteria  normal  0.620164  n/a   
 
 
-
 
NC_008463  PA14_44490  transcriptional regulator Anr  29.38 
 
 
244 aa  87  2e-16  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.793348 
 
 
-
 
NC_009832  Spro_2582  fumarate/nitrate reduction transcriptional regulator  26.75 
 
 
254 aa  87  3e-16  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_5122  Crp/FNR family transcriptional regulator  28.63 
 
 
248 aa  87  3e-16  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  26.32 
 
 
250 aa  86.7  3e-16  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
NC_009429  Rsph17025_3610  hypothetical protein  28.43 
 
 
231 aa  86.7  3e-16  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2014  fumarate/nitrate reduction transcriptional regulator  26.32 
 
 
250 aa  86.7  3e-16  Shewanella sp. MR-4  Bacteria  normal  decreased coverage  0.00000000422436 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>