More than 300 homologs were found in PanDaTox collection
for query gene PSPTO_1666 on replicon NC_004578
Organism: Pseudomonas syringae pv. tomato str. DC3000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004578  PSPTO_1666  transcriptional regulator, Crp/Fnr family  100 
 
 
250 aa  509  1e-143  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0506299  n/a   
 
 
-
 
NC_007492  Pfl01_3345  Crp/FNR family transcriptional regulator  64.5 
 
 
247 aa  311  5.999999999999999e-84  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.797997  normal 
 
 
-
 
NC_010524  Lcho_2772  Crp/FNR family transcriptional regulator  53.48 
 
 
245 aa  260  1e-68  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00275745 
 
 
-
 
NC_008825  Mpe_A2471  transcription factor Fnr  55.22 
 
 
269 aa  258  7e-68  Methylibium petroleiphilum PM1  Bacteria  normal  0.366844  normal  0.0435693 
 
 
-
 
NC_007298  Daro_1047  cyclic nucleotide-binding: regulatory protein, Crp  52.19 
 
 
247 aa  256  2e-67  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_3034  Crp/FNR family transcriptional regulator  53.74 
 
 
269 aa  251  6e-66  Pseudomonas putida W619  Bacteria  normal  0.369454  normal 
 
 
-
 
NC_011992  Dtpsy_1007  transcriptional regulator, Crp/Fnr family  49.78 
 
 
242 aa  250  1e-65  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_2782  Crp/FNR family transcriptional regulator  48.94 
 
 
262 aa  249  2e-65  Delftia acidovorans SPH-1  Bacteria  normal  0.0680307  normal  0.414614 
 
 
-
 
NC_008782  Ajs_1091  CRP/FNR family transcriptional regulator  49.78 
 
 
247 aa  250  2e-65  Acidovorax sp. JS42  Bacteria  normal  0.140321  normal 
 
 
-
 
NC_009512  Pput_2471  CRP/FNR family transcriptional regulator  52.28 
 
 
273 aa  247  1e-64  Pseudomonas putida F1  Bacteria  normal  0.185946  normal  0.661743 
 
 
-
 
NC_008786  Veis_1163  CRP/FNR family transcriptional regulator  50.21 
 
 
251 aa  247  1e-64  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1530  Crp/FNR family transcriptional regulator  48.12 
 
 
239 aa  245  4e-64  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3287  Crp/FNR family transcriptional regulator  51.04 
 
 
265 aa  245  6e-64  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_3775  CRP/FNR family transcriptional regulator  48.29 
 
 
265 aa  244  8e-64  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1204  transcriptional regulator, Crp/Fnr family  48.68 
 
 
242 aa  238  5e-62  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_1111  transcriptional regulator, Crp/Fnr family  48.68 
 
 
242 aa  238  6.999999999999999e-62  Ralstonia pickettii 12J  Bacteria  normal  0.700786  normal  0.531022 
 
 
-
 
NC_003295  RSc1283  putative fumarate and nitrate reduction regulatory transcription regulator protein  48.25 
 
 
242 aa  237  1e-61  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0516193  normal  0.32826 
 
 
-
 
NC_011662  Tmz1t_1288  transcriptional regulator, Crp/Fnr family  49.78 
 
 
246 aa  237  2e-61  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A2034  cyclic nucleotide-binding: regulatory protein, Crp  46.61 
 
 
232 aa  227  1e-58  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2037  Crp/FNR family transcriptional regulator  46.4 
 
 
232 aa  224  1e-57  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.441781 
 
 
-
 
NC_007347  Reut_A1147  cyclic nucleotide-binding: regulatory protein, Crp  48.67 
 
 
261 aa  223  2e-57  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1217  cyclic nucleotide-binding: regulatory protein, Crp  48.67 
 
 
261 aa  223  2e-57  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1207  Crp/FNR family transcriptional regulator  46.29 
 
 
264 aa  221  9e-57  Polaromonas sp. JS666  Bacteria  normal  0.494469  normal 
 
 
-
 
NC_010515  Bcenmc03_5999  Crp/FNR family transcriptional regulator  50.45 
 
 
259 aa  218  6e-56  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.582695  normal 
 
 
-
 
NC_008543  Bcen2424_4355  Crp/FNR family transcriptional regulator  50.45 
 
 
259 aa  218  6e-56  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0811079  normal 
 
 
-
 
NC_007908  Rfer_1937  Crp/FNR family transcriptional regulator  47.25 
 
 
223 aa  218  6e-56  Rhodoferax ferrireducens T118  Bacteria  normal  0.155753  n/a   
 
 
-
 
NC_008061  Bcen_4012  Crp/FNR family transcriptional regulator  50.45 
 
 
259 aa  218  6e-56  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_5811  Crp/FNR family transcriptional regulator  48.17 
 
 
266 aa  218  7.999999999999999e-56  Burkholderia phymatum STM815  Bacteria  normal  normal  0.118405 
 
 
-
 
NC_010552  BamMC406_4280  Crp/FNR family transcriptional regulator  46.93 
 
 
257 aa  217  1e-55  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.0900166 
 
 
-
 
NC_008391  Bamb_3812  Crp/FNR family transcriptional regulator  46.93 
 
 
257 aa  218  1e-55  Burkholderia ambifaria AMMD  Bacteria  normal  0.279241  normal  0.577974 
 
 
-
 
NC_007650  BTH_II0460  Crp/FNR family transcriptional regulator  45.85 
 
 
260 aa  217  2e-55  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4238  Crp/FNR family transcriptional regulator  49.55 
 
 
257 aa  215  5.9999999999999996e-55  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0460631  normal 
 
 
-
 
NC_008391  Bamb_3764  Crp/FNR family transcriptional regulator  49.55 
 
 
259 aa  215  7e-55  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0549839 
 
 
-
 
NC_009079  BMA10247_A0190  Crp/FNR family transcriptional regulator  47.22 
 
 
242 aa  214  8e-55  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1334  Crp/FNR family transcriptional regulator  47.22 
 
 
242 aa  214  8e-55  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0164  Crp/FNR family transcriptional regulator  47.22 
 
 
260 aa  214  9e-55  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1016  Crp/FNR family transcriptional regulator  47.22 
 
 
260 aa  214  9e-55  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2747  Crp/Fnr family transcriptional regulator  47.22 
 
 
260 aa  214  9e-55  Burkholderia pseudomallei 668  Bacteria  normal  0.225266  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2604  Crp/Fnr family transcriptional regulator  47.22 
 
 
260 aa  214  9e-55  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc0190  transcription regulator protein  46.26 
 
 
266 aa  214  9.999999999999999e-55  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.180711 
 
 
-
 
NC_007511  Bcep18194_B1665  Crp/FNR family transcriptional regulator  49.55 
 
 
259 aa  214  9.999999999999999e-55  Burkholderia sp. 383  Bacteria  hitchhiker  0.00239618  normal  0.130389 
 
 
-
 
NC_010622  Bphy_1138  Crp/FNR family transcriptional regulator  48.17 
 
 
260 aa  214  9.999999999999999e-55  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4265  Crp/FNR family transcriptional regulator  50 
 
 
259 aa  212  3.9999999999999995e-54  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.367581  normal  0.892156 
 
 
-
 
NC_007948  Bpro_4294  Crp/FNR family transcriptional regulator  45.54 
 
 
272 aa  212  3.9999999999999995e-54  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4561  transcriptional regulator, Crp/Fnr family  46.33 
 
 
263 aa  212  4.9999999999999996e-54  Ralstonia pickettii 12D  Bacteria  normal  normal  0.291712 
 
 
-
 
NC_010678  Rpic_4428  transcriptional regulator, Crp/Fnr family  46.33 
 
 
263 aa  212  4.9999999999999996e-54  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_010557  BamMC406_6195  Crp/FNR family transcriptional regulator  45.18 
 
 
257 aa  212  4.9999999999999996e-54  Burkholderia ambifaria MC40-6  Bacteria  normal  0.107166  normal  0.295507 
 
 
-
 
NC_010087  Bmul_5904  Crp/FNR family transcriptional regulator  45.61 
 
 
257 aa  211  7e-54  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.379633  normal  0.222249 
 
 
-
 
NC_007435  BURPS1710b_A0129  Crp/FNR family transcriptional regulator  45.25 
 
 
259 aa  211  9e-54  Burkholderia pseudomallei 1710b  Bacteria  normal  0.300797  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1554  Crp/FNR family transcriptional regulator  45.25 
 
 
259 aa  211  9e-54  Burkholderia pseudomallei 1106a  Bacteria  normal  0.796955  n/a   
 
 
-
 
NC_009075  BURPS668_A1636  Crp/FNR family transcriptional regulator  45.25 
 
 
259 aa  211  9e-54  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5737  Crp/FNR family transcriptional regulator  45.61 
 
 
248 aa  210  2e-53  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.188641 
 
 
-
 
NC_010515  Bcenmc03_4486  Crp/FNR family transcriptional regulator  45.61 
 
 
248 aa  210  2e-53  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_5122  Crp/FNR family transcriptional regulator  45.61 
 
 
248 aa  210  2e-53  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6315  transcriptional regulator, Crp/Fnr family  44.14 
 
 
403 aa  209  3e-53  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B3138  Crp/FNR family transcriptional regulator  45.58 
 
 
248 aa  209  4e-53  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_0792  CRP/FNR family transcriptional regulator  46.43 
 
 
262 aa  209  5e-53  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.328451  normal 
 
 
-
 
NC_007952  Bxe_B0606  Crp/FNR family transcriptional regulator  43.81 
 
 
267 aa  208  6e-53  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.149995 
 
 
-
 
NC_010086  Bmul_5297  Crp/FNR family transcriptional regulator  46.46 
 
 
248 aa  208  7e-53  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_0460  CRP/FNR family transcriptional regulator  43.56 
 
 
256 aa  208  7e-53  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II1244  Crp/FNR family transcriptional regulator  44.8 
 
 
261 aa  206  2e-52  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_5008  Crp/FNR family transcriptional regulator  43.64 
 
 
249 aa  206  3e-52  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1170  Crp/FNR family transcriptional regulator  45.54 
 
 
274 aa  205  4e-52  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3149  Crp/FNR family transcriptional regulator  43.59 
 
 
249 aa  206  4e-52  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_1692  Crp/FNR family transcriptional regulator  44.74 
 
 
244 aa  204  8e-52  Cupriavidus metallidurans CH34  Bacteria  normal  0.816346  normal 
 
 
-
 
NC_010531  Pnec_1356  transcriptional regulator, Crp/Fnr family  43.11 
 
 
256 aa  202  4e-51  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0588975 
 
 
-
 
NC_006349  BMAA0031  Crp/FNR family transcriptional regulator  43.86 
 
 
251 aa  201  9.999999999999999e-51  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0035  Crp/FNR family transcriptional regulator  43.86 
 
 
251 aa  201  9.999999999999999e-51  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0037  Crp/FNR family transcriptional regulator  43.86 
 
 
251 aa  201  9.999999999999999e-51  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0037  Crp/FNR family transcriptional regulator  43.86 
 
 
251 aa  201  9.999999999999999e-51  Burkholderia mallei NCTC 10247  Bacteria  normal  0.284481  n/a   
 
 
-
 
NC_010676  Bphyt_4272  transcriptional regulator, Crp/Fnr family  43.58 
 
 
218 aa  201  9.999999999999999e-51  Burkholderia phytofirmans PsJN  Bacteria  normal  0.71016  normal  0.563993 
 
 
-
 
NC_009075  BURPS668_A0051  cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases  43.86 
 
 
251 aa  201  9.999999999999999e-51  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1464  Crp/FNR family transcriptional regulator  43.86 
 
 
251 aa  201  9.999999999999999e-51  Burkholderia mallei NCTC 10229  Bacteria  normal  0.855917  n/a   
 
 
-
 
NC_008784  BMASAVP1_1184  Crp/FNR family transcriptional regulator  43.86 
 
 
251 aa  201  9.999999999999999e-51  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_4433  Crp/FNR family transcriptional regulator  44.91 
 
 
224 aa  200  1.9999999999999998e-50  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007435  BURPS1710b_A1540  Crp/FNR family transcriptional regulator  43.86 
 
 
630 aa  199  3.9999999999999996e-50  Burkholderia pseudomallei 1710b  Bacteria  normal  0.18142  n/a   
 
 
-
 
NC_009654  Mmwyl1_2233  CRP/FNR family transcriptional regulator  40.79 
 
 
253 aa  197  2.0000000000000003e-49  Marinomonas sp. MWYL1  Bacteria  normal  0.0375344  normal  0.791743 
 
 
-
 
NC_007974  Rmet_4521  Crp/Fnr family transcriptional regulator  40.17 
 
 
257 aa  196  2.0000000000000003e-49  Cupriavidus metallidurans CH34  Bacteria  normal  0.0161618  normal  0.0108643 
 
 
-
 
NC_010682  Rpic_2510  transcriptional regulator, Crp/Fnr family  43.16 
 
 
274 aa  195  7e-49  Ralstonia pickettii 12J  Bacteria  normal  normal  0.6173 
 
 
-
 
NC_009783  VIBHAR_02295  fumarate/nitrate reduction transcriptional regulator  43.95 
 
 
248 aa  192  5e-48  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_003475  fumarate and nitrate reduction regulatory protein  43.5 
 
 
248 aa  190  2e-47  Vibrio sp. Ex25  Bacteria  normal  0.292896  n/a   
 
 
-
 
NC_009457  VC0395_A1045  fumarate/nitrate reduction transcriptional regulator  43.1 
 
 
250 aa  189  4e-47  Vibrio cholerae O395  Bacteria  normal  0.18077  n/a   
 
 
-
 
NC_003910  CPS_1987  fumarate/nitrate reduction transcriptional regulator  42.53 
 
 
239 aa  189  5e-47  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1843  fumarate/nitrate reduction transcriptional regulator  41.26 
 
 
250 aa  188  8e-47  Shewanella denitrificans OS217  Bacteria  normal  0.0177159  n/a   
 
 
-
 
NC_010159  YpAngola_A2293  fumarate/nitrate reduction transcriptional regulator  44.86 
 
 
250 aa  187  9e-47  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_1944  fumarate/nitrate reduction transcriptional regulator  44.86 
 
 
250 aa  187  1e-46  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.755264  n/a   
 
 
-
 
NC_009708  YpsIP31758_1833  fumarate/nitrate reduction transcriptional regulator  44.86 
 
 
250 aa  187  1e-46  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  41.6 
 
 
254 aa  187  1e-46  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  40.36 
 
 
250 aa  186  3e-46  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_012880  Dd703_1864  fumarate/nitrate reduction transcriptional regulator  43.05 
 
 
250 aa  186  4e-46  Dickeya dadantii Ech703  Bacteria  normal  0.856056  n/a   
 
 
-
 
NC_009831  Ssed_2219  fumarate/nitrate reduction transcriptional regulator  41.26 
 
 
249 aa  186  4e-46  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A1773  Crp/FNR family transcriptional regulator  41.07 
 
 
263 aa  185  5e-46  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I1571  fumarate/nitrate reduction transcriptional regulator  42.15 
 
 
250 aa  185  6e-46  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.75505  n/a   
 
 
-
 
NC_008340  Mlg_0319  Crp/FNR family transcriptional regulator  41.88 
 
 
262 aa  185  7e-46  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2014  fumarate/nitrate reduction transcriptional regulator  41.26 
 
 
250 aa  184  8e-46  Shewanella sp. MR-4  Bacteria  normal  decreased coverage  0.00000000422436 
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  41.26 
 
 
250 aa  184  8e-46  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
NC_004347  SO_2356  fumarate/nitrate reduction transcriptional regulator  41.26 
 
 
254 aa  184  1.0000000000000001e-45  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009832  Spro_2582  fumarate/nitrate reduction transcriptional regulator  42.6 
 
 
254 aa  184  1.0000000000000001e-45  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_2081  fumarate/nitrate reduction transcriptional regulator  43.46 
 
 
250 aa  184  2.0000000000000003e-45  Dickeya zeae Ech1591  Bacteria  normal  0.0488524  n/a   
 
 
-
 
NC_008700  Sama_1799  fumarate/nitrate reduction transcriptional regulator  40.81 
 
 
250 aa  184  2.0000000000000003e-45  Shewanella amazonensis SB2B  Bacteria  normal  0.417815  normal  0.180258 
 
 
-
 
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