More than 300 homologs were found in PanDaTox collection
for query gene Pnap_3775 on replicon NC_008781
Organism: Polaromonas naphthalenivorans CJ2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008781  Pnap_3775  CRP/FNR family transcriptional regulator  100 
 
 
265 aa  540  9.999999999999999e-153  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_1091  CRP/FNR family transcriptional regulator  85.19 
 
 
247 aa  421  1e-117  Acidovorax sp. JS42  Bacteria  normal  0.140321  normal 
 
 
-
 
NC_008752  Aave_1530  Crp/FNR family transcriptional regulator  86.25 
 
 
239 aa  421  1e-117  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_1007  transcriptional regulator, Crp/Fnr family  86.19 
 
 
242 aa  418  1e-116  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_1163  CRP/FNR family transcriptional regulator  80.57 
 
 
251 aa  407  1e-113  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_2782  Crp/FNR family transcriptional regulator  79.18 
 
 
262 aa  408  1e-113  Delftia acidovorans SPH-1  Bacteria  normal  0.0680307  normal  0.414614 
 
 
-
 
NC_007908  Rfer_1937  Crp/FNR family transcriptional regulator  82.33 
 
 
223 aa  369  1e-101  Rhodoferax ferrireducens T118  Bacteria  normal  0.155753  n/a   
 
 
-
 
NC_007948  Bpro_1207  Crp/FNR family transcriptional regulator  71.71 
 
 
264 aa  356  1.9999999999999998e-97  Polaromonas sp. JS666  Bacteria  normal  0.494469  normal 
 
 
-
 
NC_010524  Lcho_2772  Crp/FNR family transcriptional regulator  68.7 
 
 
245 aa  339  2.9999999999999998e-92  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00275745 
 
 
-
 
NC_007298  Daro_1047  cyclic nucleotide-binding: regulatory protein, Crp  65 
 
 
247 aa  334  9e-91  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A2471  transcription factor Fnr  67.66 
 
 
269 aa  328  5.0000000000000004e-89  Methylibium petroleiphilum PM1  Bacteria  normal  0.366844  normal  0.0435693 
 
 
-
 
NC_011662  Tmz1t_1288  transcriptional regulator, Crp/Fnr family  60 
 
 
246 aa  307  9e-83  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1170  Crp/FNR family transcriptional regulator  51.25 
 
 
274 aa  258  6e-68  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4294  Crp/FNR family transcriptional regulator  53.12 
 
 
272 aa  255  5e-67  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_3345  Crp/FNR family transcriptional regulator  51.06 
 
 
247 aa  254  8e-67  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.797997  normal 
 
 
-
 
NC_008781  Pnap_0792  CRP/FNR family transcriptional regulator  53.91 
 
 
262 aa  253  2.0000000000000002e-66  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.328451  normal 
 
 
-
 
NC_010676  Bphyt_6315  transcriptional regulator, Crp/Fnr family  52.04 
 
 
403 aa  253  2.0000000000000002e-66  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_3812  Crp/FNR family transcriptional regulator  50.22 
 
 
257 aa  252  4.0000000000000004e-66  Burkholderia ambifaria AMMD  Bacteria  normal  0.279241  normal  0.577974 
 
 
-
 
NC_012856  Rpic12D_1204  transcriptional regulator, Crp/Fnr family  51.56 
 
 
242 aa  252  5.000000000000001e-66  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_4280  Crp/FNR family transcriptional regulator  50.22 
 
 
257 aa  252  5.000000000000001e-66  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.0900166 
 
 
-
 
NC_010622  Bphy_1138  Crp/FNR family transcriptional regulator  53.64 
 
 
260 aa  251  6e-66  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_1111  transcriptional regulator, Crp/Fnr family  51.56 
 
 
242 aa  251  6e-66  Ralstonia pickettii 12J  Bacteria  normal  0.700786  normal  0.531022 
 
 
-
 
NC_010087  Bmul_5904  Crp/FNR family transcriptional regulator  51.12 
 
 
257 aa  251  6e-66  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.379633  normal  0.222249 
 
 
-
 
NC_010625  Bphy_5811  Crp/FNR family transcriptional regulator  53.64 
 
 
266 aa  251  7e-66  Burkholderia phymatum STM815  Bacteria  normal  normal  0.118405 
 
 
-
 
NC_007650  BTH_II0460  Crp/FNR family transcriptional regulator  49.79 
 
 
260 aa  251  8.000000000000001e-66  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc1283  putative fumarate and nitrate reduction regulatory transcription regulator protein  51.56 
 
 
242 aa  250  2e-65  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0516193  normal  0.32826 
 
 
-
 
NC_007973  Rmet_2037  Crp/FNR family transcriptional regulator  49.78 
 
 
232 aa  248  7e-65  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.441781 
 
 
-
 
NC_007952  Bxe_B0606  Crp/FNR family transcriptional regulator  45.63 
 
 
267 aa  248  8e-65  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.149995 
 
 
-
 
NC_010557  BamMC406_6195  Crp/FNR family transcriptional regulator  50.22 
 
 
257 aa  247  1e-64  Burkholderia ambifaria MC40-6  Bacteria  normal  0.107166  normal  0.295507 
 
 
-
 
NC_007347  Reut_A2034  cyclic nucleotide-binding: regulatory protein, Crp  48.46 
 
 
232 aa  245  6e-64  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0164  Crp/FNR family transcriptional regulator  49.37 
 
 
260 aa  244  8e-64  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1016  Crp/FNR family transcriptional regulator  49.37 
 
 
260 aa  244  8e-64  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2604  Crp/Fnr family transcriptional regulator  49.37 
 
 
260 aa  244  8e-64  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2747  Crp/Fnr family transcriptional regulator  49.37 
 
 
260 aa  244  8e-64  Burkholderia pseudomallei 668  Bacteria  normal  0.225266  n/a   
 
 
-
 
NC_004578  PSPTO_1666  transcriptional regulator, Crp/Fnr family  48.29 
 
 
250 aa  244  9e-64  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0506299  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0129  Crp/FNR family transcriptional regulator  50.91 
 
 
259 aa  244  9.999999999999999e-64  Burkholderia pseudomallei 1710b  Bacteria  normal  0.300797  n/a   
 
 
-
 
NC_008784  BMASAVP1_1334  Crp/FNR family transcriptional regulator  49.37 
 
 
242 aa  244  9.999999999999999e-64  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A1636  Crp/FNR family transcriptional regulator  50.91 
 
 
259 aa  244  9.999999999999999e-64  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1554  Crp/FNR family transcriptional regulator  50.91 
 
 
259 aa  244  9.999999999999999e-64  Burkholderia pseudomallei 1106a  Bacteria  normal  0.796955  n/a   
 
 
-
 
NC_009079  BMA10247_A0190  Crp/FNR family transcriptional regulator  49.37 
 
 
242 aa  244  9.999999999999999e-64  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II1244  Crp/FNR family transcriptional regulator  50.91 
 
 
261 aa  243  1.9999999999999999e-63  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_4265  Crp/FNR family transcriptional regulator  51.36 
 
 
259 aa  241  1e-62  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.367581  normal  0.892156 
 
 
-
 
NC_010515  Bcenmc03_4486  Crp/FNR family transcriptional regulator  51.13 
 
 
248 aa  240  1e-62  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010531  Pnec_1356  transcriptional regulator, Crp/Fnr family  48.29 
 
 
256 aa  241  1e-62  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0588975 
 
 
-
 
NC_007511  Bcep18194_B3138  Crp/FNR family transcriptional regulator  51.36 
 
 
248 aa  239  2.9999999999999997e-62  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_4238  Crp/FNR family transcriptional regulator  50.67 
 
 
257 aa  238  5e-62  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0460631  normal 
 
 
-
 
NC_007511  Bcep18194_B1665  Crp/FNR family transcriptional regulator  50.91 
 
 
259 aa  238  5.999999999999999e-62  Burkholderia sp. 383  Bacteria  hitchhiker  0.00239618  normal  0.130389 
 
 
-
 
NC_008543  Bcen2424_5737  Crp/FNR family transcriptional regulator  50.68 
 
 
248 aa  238  1e-61  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.188641 
 
 
-
 
NC_008061  Bcen_5122  Crp/FNR family transcriptional regulator  50.68 
 
 
248 aa  238  1e-61  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3764  Crp/FNR family transcriptional regulator  50.67 
 
 
259 aa  237  1e-61  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0549839 
 
 
-
 
NC_009379  Pnuc_0460  CRP/FNR family transcriptional regulator  49.55 
 
 
256 aa  237  2e-61  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_3149  Crp/FNR family transcriptional regulator  50.91 
 
 
249 aa  235  6e-61  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_4272  transcriptional regulator, Crp/Fnr family  47.71 
 
 
218 aa  234  7e-61  Burkholderia phytofirmans PsJN  Bacteria  normal  0.71016  normal  0.563993 
 
 
-
 
NC_008391  Bamb_5008  Crp/FNR family transcriptional regulator  50.91 
 
 
249 aa  235  7e-61  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5999  Crp/FNR family transcriptional regulator  50 
 
 
259 aa  234  8e-61  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.582695  normal 
 
 
-
 
NC_008543  Bcen2424_4355  Crp/FNR family transcriptional regulator  50 
 
 
259 aa  234  9e-61  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0811079  normal 
 
 
-
 
NC_010623  Bphy_4433  Crp/FNR family transcriptional regulator  47.25 
 
 
224 aa  234  9e-61  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4012  Crp/FNR family transcriptional regulator  50 
 
 
259 aa  234  9e-61  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_5297  Crp/FNR family transcriptional regulator  50.45 
 
 
248 aa  234  1.0000000000000001e-60  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4428  transcriptional regulator, Crp/Fnr family  46.25 
 
 
263 aa  233  2.0000000000000002e-60  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4561  transcriptional regulator, Crp/Fnr family  46.25 
 
 
263 aa  233  2.0000000000000002e-60  Ralstonia pickettii 12D  Bacteria  normal  normal  0.291712 
 
 
-
 
NC_007435  BURPS1710b_A1540  Crp/FNR family transcriptional regulator  50 
 
 
630 aa  231  7.000000000000001e-60  Burkholderia pseudomallei 1710b  Bacteria  normal  0.18142  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0037  Crp/FNR family transcriptional regulator  50 
 
 
251 aa  231  8.000000000000001e-60  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A0051  cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases  50 
 
 
251 aa  231  8.000000000000001e-60  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0031  Crp/FNR family transcriptional regulator  50 
 
 
251 aa  231  9e-60  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0037  Crp/FNR family transcriptional regulator  50 
 
 
251 aa  231  9e-60  Burkholderia mallei NCTC 10247  Bacteria  normal  0.284481  n/a   
 
 
-
 
NC_008784  BMASAVP1_1184  Crp/FNR family transcriptional regulator  50 
 
 
251 aa  231  9e-60  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1464  Crp/FNR family transcriptional regulator  50 
 
 
251 aa  231  9e-60  Burkholderia mallei NCTC 10229  Bacteria  normal  0.855917  n/a   
 
 
-
 
NC_007650  BTH_II0035  Crp/FNR family transcriptional regulator  50 
 
 
251 aa  230  2e-59  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1147  cyclic nucleotide-binding: regulatory protein, Crp  50.47 
 
 
261 aa  226  3e-58  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1217  cyclic nucleotide-binding: regulatory protein, Crp  50.47 
 
 
261 aa  226  3e-58  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc0190  transcription regulator protein  41.76 
 
 
266 aa  226  4e-58  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.180711 
 
 
-
 
NC_007974  Rmet_4521  Crp/Fnr family transcriptional regulator  43.58 
 
 
257 aa  225  6e-58  Cupriavidus metallidurans CH34  Bacteria  normal  0.0161618  normal  0.0108643 
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  47.56 
 
 
254 aa  220  1.9999999999999999e-56  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_3287  Crp/FNR family transcriptional regulator  43.64 
 
 
265 aa  217  2e-55  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2471  CRP/FNR family transcriptional regulator  42.68 
 
 
273 aa  216  4e-55  Pseudomonas putida F1  Bacteria  normal  0.185946  normal  0.661743 
 
 
-
 
NC_007908  Rfer_1703  Crp/FNR family transcriptional regulator  48.5 
 
 
276 aa  210  2e-53  Rhodoferax ferrireducens T118  Bacteria  normal  0.0806739  n/a   
 
 
-
 
NC_010682  Rpic_2510  transcriptional regulator, Crp/Fnr family  44.68 
 
 
274 aa  207  1e-52  Ralstonia pickettii 12J  Bacteria  normal  normal  0.6173 
 
 
-
 
NC_007973  Rmet_1692  Crp/FNR family transcriptional regulator  43.95 
 
 
244 aa  205  6e-52  Cupriavidus metallidurans CH34  Bacteria  normal  0.816346  normal 
 
 
-
 
NC_009438  Sputcn32_1951  fumarate/nitrate reduction transcriptional regulator  41.3 
 
 
250 aa  204  8e-52  Shewanella putrefaciens CN-32  Bacteria  normal  0.80493  n/a   
 
 
-
 
NC_009997  Sbal195_2212  fumarate/nitrate reduction transcriptional regulator  40.87 
 
 
250 aa  204  1e-51  Shewanella baltica OS195  Bacteria  hitchhiker  0.00299596  normal  0.266977 
 
 
-
 
NC_010501  PputW619_3034  Crp/FNR family transcriptional regulator  39.48 
 
 
269 aa  204  1e-51  Pseudomonas putida W619  Bacteria  normal  0.369454  normal 
 
 
-
 
NC_009052  Sbal_2209  fumarate/nitrate reduction transcriptional regulator  40.87 
 
 
250 aa  204  1e-51  Shewanella baltica OS155  Bacteria  hitchhiker  0.00613295  n/a   
 
 
-
 
NC_009665  Shew185_2162  fumarate/nitrate reduction transcriptional regulator  40.87 
 
 
250 aa  204  1e-51  Shewanella baltica OS185  Bacteria  normal  0.914647  n/a   
 
 
-
 
NC_009035  Sbal_4495  fumarate/nitrate reduction transcriptional regulator  40.87 
 
 
250 aa  204  1e-51  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_2222  fumarate/nitrate reduction transcriptional regulator  40.87 
 
 
250 aa  204  1e-51  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000942023  normal  0.178468 
 
 
-
 
NC_008322  Shewmr7_1961  fumarate/nitrate reduction transcriptional regulator  41.23 
 
 
250 aa  203  2e-51  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00754009 
 
 
-
 
NC_008345  Sfri_2018  fumarate/nitrate reduction transcriptional regulator  39.58 
 
 
252 aa  203  2e-51  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.831368  n/a   
 
 
-
 
NC_013889  TK90_0787  transcriptional regulator, Crp/Fnr family  40.54 
 
 
243 aa  203  3e-51  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  41.23 
 
 
250 aa  202  4e-51  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
NC_008321  Shewmr4_2014  fumarate/nitrate reduction transcriptional regulator  41.23 
 
 
250 aa  202  4e-51  Shewanella sp. MR-4  Bacteria  normal  decreased coverage  0.00000000422436 
 
 
-
 
NC_004347  SO_2356  fumarate/nitrate reduction transcriptional regulator  41.23 
 
 
254 aa  201  8e-51  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009656  PSPA7_3788  transcriptional regulator Anr  43.32 
 
 
244 aa  201  9.999999999999999e-51  Pseudomonas aeruginosa PA7  Bacteria  normal  0.620164  n/a   
 
 
-
 
NC_008463  PA14_44490  transcriptional regulator Anr  43.32 
 
 
244 aa  201  9.999999999999999e-51  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.793348 
 
 
-
 
NC_007954  Sden_1843  fumarate/nitrate reduction transcriptional regulator  38.53 
 
 
250 aa  200  1.9999999999999998e-50  Shewanella denitrificans OS217  Bacteria  normal  0.0177159  n/a   
 
 
-
 
NC_009092  Shew_1993  fumarate/nitrate reduction transcriptional regulator  39.57 
 
 
249 aa  199  3.9999999999999996e-50  Shewanella loihica PV-4  Bacteria  normal  0.238952  normal 
 
 
-
 
NC_008700  Sama_1799  fumarate/nitrate reduction transcriptional regulator  40.79 
 
 
250 aa  198  6e-50  Shewanella amazonensis SB2B  Bacteria  normal  0.417815  normal  0.180258 
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  40.99 
 
 
250 aa  197  1.0000000000000001e-49  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_010506  Swoo_2417  fumarate/nitrate reduction transcriptional regulator  40.17 
 
 
249 aa  197  1.0000000000000001e-49  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0646393  decreased coverage  0.000000159166 
 
 
-
 
NC_003910  CPS_1987  fumarate/nitrate reduction transcriptional regulator  38.77 
 
 
239 aa  196  3e-49  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
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