More than 300 homologs were found in PanDaTox collection
for query gene Bamb_3764 on replicon NC_008391
Organism: Burkholderia ambifaria AMMD



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008391  Bamb_3764  Crp/FNR family transcriptional regulator  100 
 
 
259 aa  534  1e-151  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0549839 
 
 
-
 
NC_010552  BamMC406_4238  Crp/FNR family transcriptional regulator  98.83 
 
 
257 aa  523  1e-148  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0460631  normal 
 
 
-
 
NC_010515  Bcenmc03_5999  Crp/FNR family transcriptional regulator  88.8 
 
 
259 aa  470  1e-132  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.582695  normal 
 
 
-
 
NC_008061  Bcen_4012  Crp/FNR family transcriptional regulator  88.42 
 
 
259 aa  468  1.0000000000000001e-131  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4355  Crp/FNR family transcriptional regulator  88.42 
 
 
259 aa  468  1.0000000000000001e-131  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0811079  normal 
 
 
-
 
NC_007511  Bcep18194_B1665  Crp/FNR family transcriptional regulator  87.64 
 
 
259 aa  465  9.999999999999999e-131  Burkholderia sp. 383  Bacteria  hitchhiker  0.00239618  normal  0.130389 
 
 
-
 
NC_010086  Bmul_4265  Crp/FNR family transcriptional regulator  84.17 
 
 
259 aa  450  1.0000000000000001e-126  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.367581  normal  0.892156 
 
 
-
 
NC_010625  Bphy_5811  Crp/FNR family transcriptional regulator  68.08 
 
 
266 aa  365  1e-100  Burkholderia phymatum STM815  Bacteria  normal  normal  0.118405 
 
 
-
 
NC_009075  BURPS668_A1636  Crp/FNR family transcriptional regulator  68.95 
 
 
259 aa  366  1e-100  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0129  Crp/FNR family transcriptional regulator  68.55 
 
 
259 aa  362  3e-99  Burkholderia pseudomallei 1710b  Bacteria  normal  0.300797  n/a   
 
 
-
 
NC_007650  BTH_II0460  Crp/FNR family transcriptional regulator  66.92 
 
 
260 aa  362  3e-99  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1554  Crp/FNR family transcriptional regulator  68.55 
 
 
259 aa  362  3e-99  Burkholderia pseudomallei 1106a  Bacteria  normal  0.796955  n/a   
 
 
-
 
NC_010622  Bphy_1138  Crp/FNR family transcriptional regulator  65.25 
 
 
260 aa  359  2e-98  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_006349  BMAA0164  Crp/FNR family transcriptional regulator  66.92 
 
 
260 aa  359  3e-98  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1016  Crp/FNR family transcriptional regulator  66.92 
 
 
260 aa  359  3e-98  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2604  Crp/Fnr family transcriptional regulator  66.92 
 
 
260 aa  359  3e-98  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2747  Crp/Fnr family transcriptional regulator  66.92 
 
 
260 aa  359  3e-98  Burkholderia pseudomallei 668  Bacteria  normal  0.225266  n/a   
 
 
-
 
NC_008784  BMASAVP1_1334  Crp/FNR family transcriptional regulator  69.87 
 
 
242 aa  354  6.999999999999999e-97  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0190  Crp/FNR family transcriptional regulator  69.87 
 
 
242 aa  354  6.999999999999999e-97  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II1244  Crp/FNR family transcriptional regulator  66.92 
 
 
261 aa  351  7e-96  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3812  Crp/FNR family transcriptional regulator  63.32 
 
 
257 aa  350  2e-95  Burkholderia ambifaria AMMD  Bacteria  normal  0.279241  normal  0.577974 
 
 
-
 
NC_010552  BamMC406_4280  Crp/FNR family transcriptional regulator  62.93 
 
 
257 aa  349  3e-95  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.0900166 
 
 
-
 
NC_010557  BamMC406_6195  Crp/FNR family transcriptional regulator  63.18 
 
 
257 aa  345  3e-94  Burkholderia ambifaria MC40-6  Bacteria  normal  0.107166  normal  0.295507 
 
 
-
 
NC_010087  Bmul_5904  Crp/FNR family transcriptional regulator  62.93 
 
 
257 aa  345  3e-94  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.379633  normal  0.222249 
 
 
-
 
NC_010676  Bphyt_6315  transcriptional regulator, Crp/Fnr family  58.02 
 
 
403 aa  318  3.9999999999999996e-86  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B0606  Crp/FNR family transcriptional regulator  53.49 
 
 
267 aa  288  8e-77  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.149995 
 
 
-
 
NC_007347  Reut_A1147  cyclic nucleotide-binding: regulatory protein, Crp  54.89 
 
 
261 aa  273  3e-72  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1217  cyclic nucleotide-binding: regulatory protein, Crp  54.89 
 
 
261 aa  273  3e-72  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_4272  transcriptional regulator, Crp/Fnr family  55.05 
 
 
218 aa  267  1e-70  Burkholderia phytofirmans PsJN  Bacteria  normal  0.71016  normal  0.563993 
 
 
-
 
NC_010552  BamMC406_3149  Crp/FNR family transcriptional regulator  51.61 
 
 
249 aa  265  5.999999999999999e-70  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_4433  Crp/FNR family transcriptional regulator  54.59 
 
 
224 aa  264  1e-69  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_5297  Crp/FNR family transcriptional regulator  52.82 
 
 
248 aa  263  3e-69  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_5008  Crp/FNR family transcriptional regulator  51.43 
 
 
249 aa  261  6.999999999999999e-69  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B3138  Crp/FNR family transcriptional regulator  51.61 
 
 
248 aa  261  8.999999999999999e-69  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_4521  Crp/Fnr family transcriptional regulator  52.81 
 
 
257 aa  260  1e-68  Cupriavidus metallidurans CH34  Bacteria  normal  0.0161618  normal  0.0108643 
 
 
-
 
NC_010515  Bcenmc03_4486  Crp/FNR family transcriptional regulator  51.21 
 
 
248 aa  260  2e-68  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_5122  Crp/FNR family transcriptional regulator  51.21 
 
 
248 aa  259  3e-68  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5737  Crp/FNR family transcriptional regulator  51.21 
 
 
248 aa  259  3e-68  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.188641 
 
 
-
 
NC_010524  Lcho_2772  Crp/FNR family transcriptional regulator  54.71 
 
 
245 aa  257  1e-67  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00275745 
 
 
-
 
NC_007435  BURPS1710b_A1540  Crp/FNR family transcriptional regulator  52.86 
 
 
630 aa  257  2e-67  Burkholderia pseudomallei 1710b  Bacteria  normal  0.18142  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0037  Crp/FNR family transcriptional regulator  52.86 
 
 
251 aa  256  2e-67  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A0051  cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases  52.86 
 
 
251 aa  256  2e-67  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4428  transcriptional regulator, Crp/Fnr family  51.28 
 
 
263 aa  256  3e-67  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4561  transcriptional regulator, Crp/Fnr family  51.28 
 
 
263 aa  256  3e-67  Ralstonia pickettii 12D  Bacteria  normal  normal  0.291712 
 
 
-
 
NC_007650  BTH_II0035  Crp/FNR family transcriptional regulator  52.86 
 
 
251 aa  256  3e-67  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0031  Crp/FNR family transcriptional regulator  52.42 
 
 
251 aa  255  6e-67  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1464  Crp/FNR family transcriptional regulator  52.42 
 
 
251 aa  255  6e-67  Burkholderia mallei NCTC 10229  Bacteria  normal  0.855917  n/a   
 
 
-
 
NC_008784  BMASAVP1_1184  Crp/FNR family transcriptional regulator  52.42 
 
 
251 aa  255  6e-67  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0037  Crp/FNR family transcriptional regulator  52.42 
 
 
251 aa  255  6e-67  Burkholderia mallei NCTC 10247  Bacteria  normal  0.284481  n/a   
 
 
-
 
NC_003295  RSc0190  transcription regulator protein  51.06 
 
 
266 aa  252  4.0000000000000004e-66  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.180711 
 
 
-
 
NC_007298  Daro_1047  cyclic nucleotide-binding: regulatory protein, Crp  53.18 
 
 
247 aa  250  2e-65  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_1007  transcriptional regulator, Crp/Fnr family  51.57 
 
 
242 aa  249  2e-65  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1091  CRP/FNR family transcriptional regulator  51.57 
 
 
247 aa  249  3e-65  Acidovorax sp. JS42  Bacteria  normal  0.140321  normal 
 
 
-
 
NC_010002  Daci_2782  Crp/FNR family transcriptional regulator  50.67 
 
 
262 aa  244  9.999999999999999e-64  Delftia acidovorans SPH-1  Bacteria  normal  0.0680307  normal  0.414614 
 
 
-
 
NC_008786  Veis_1163  CRP/FNR family transcriptional regulator  48.35 
 
 
251 aa  243  1.9999999999999999e-63  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1530  Crp/FNR family transcriptional regulator  50.67 
 
 
239 aa  243  1.9999999999999999e-63  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_1288  transcriptional regulator, Crp/Fnr family  51.12 
 
 
246 aa  240  2e-62  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3775  CRP/FNR family transcriptional regulator  50.67 
 
 
265 aa  239  4e-62  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A2471  transcription factor Fnr  54.55 
 
 
269 aa  238  6.999999999999999e-62  Methylibium petroleiphilum PM1  Bacteria  normal  0.366844  normal  0.0435693 
 
 
-
 
NC_007948  Bpro_1170  Crp/FNR family transcriptional regulator  50.22 
 
 
274 aa  230  2e-59  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_3345  Crp/FNR family transcriptional regulator  48.52 
 
 
247 aa  229  3e-59  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.797997  normal 
 
 
-
 
NC_010682  Rpic_2510  transcriptional regulator, Crp/Fnr family  51.56 
 
 
274 aa  229  4e-59  Ralstonia pickettii 12J  Bacteria  normal  normal  0.6173 
 
 
-
 
NC_007948  Bpro_4294  Crp/FNR family transcriptional regulator  46.56 
 
 
272 aa  228  6e-59  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1207  Crp/FNR family transcriptional regulator  49.78 
 
 
264 aa  226  2e-58  Polaromonas sp. JS666  Bacteria  normal  0.494469  normal 
 
 
-
 
NC_007908  Rfer_1937  Crp/FNR family transcriptional regulator  50.23 
 
 
223 aa  223  2e-57  Rhodoferax ferrireducens T118  Bacteria  normal  0.155753  n/a   
 
 
-
 
NC_009379  Pnuc_0460  CRP/FNR family transcriptional regulator  45.06 
 
 
256 aa  221  7e-57  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_0792  CRP/FNR family transcriptional regulator  44.19 
 
 
262 aa  220  1.9999999999999999e-56  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.328451  normal 
 
 
-
 
NC_012856  Rpic12D_1204  transcriptional regulator, Crp/Fnr family  43.81 
 
 
242 aa  218  1e-55  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_1111  transcriptional regulator, Crp/Fnr family  43.22 
 
 
242 aa  217  2e-55  Ralstonia pickettii 12J  Bacteria  normal  0.700786  normal  0.531022 
 
 
-
 
NC_003295  RSc1283  putative fumarate and nitrate reduction regulatory transcription regulator protein  42.68 
 
 
242 aa  216  4e-55  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0516193  normal  0.32826 
 
 
-
 
NC_004578  PSPTO_1666  transcriptional regulator, Crp/Fnr family  49.55 
 
 
250 aa  215  5.9999999999999996e-55  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0506299  n/a   
 
 
-
 
NC_010531  Pnec_1356  transcriptional regulator, Crp/Fnr family  43.35 
 
 
256 aa  214  9.999999999999999e-55  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0588975 
 
 
-
 
NC_007973  Rmet_2037  Crp/FNR family transcriptional regulator  42.41 
 
 
232 aa  212  5.999999999999999e-54  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.441781 
 
 
-
 
NC_007347  Reut_A2034  cyclic nucleotide-binding: regulatory protein, Crp  41.52 
 
 
232 aa  209  2e-53  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_3034  Crp/FNR family transcriptional regulator  40.82 
 
 
269 aa  196  3e-49  Pseudomonas putida W619  Bacteria  normal  0.369454  normal 
 
 
-
 
NC_008345  Sfri_2018  fumarate/nitrate reduction transcriptional regulator  39.82 
 
 
252 aa  193  2e-48  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.831368  n/a   
 
 
-
 
NC_009438  Sputcn32_1951  fumarate/nitrate reduction transcriptional regulator  39.91 
 
 
250 aa  192  4e-48  Shewanella putrefaciens CN-32  Bacteria  normal  0.80493  n/a   
 
 
-
 
NC_009656  PSPA7_3788  transcriptional regulator Anr  41.63 
 
 
244 aa  192  6e-48  Pseudomonas aeruginosa PA7  Bacteria  normal  0.620164  n/a   
 
 
-
 
NC_009831  Ssed_2219  fumarate/nitrate reduction transcriptional regulator  38.36 
 
 
249 aa  192  6e-48  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_44490  transcriptional regulator Anr  41.63 
 
 
244 aa  192  6e-48  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.793348 
 
 
-
 
NC_002947  PP_3287  Crp/FNR family transcriptional regulator  44.09 
 
 
265 aa  191  8e-48  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  38.05 
 
 
250 aa  191  1e-47  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_009654  Mmwyl1_2233  CRP/FNR family transcriptional regulator  41.1 
 
 
253 aa  191  1e-47  Marinomonas sp. MWYL1  Bacteria  normal  0.0375344  normal  0.791743 
 
 
-
 
NC_004347  SO_2356  fumarate/nitrate reduction transcriptional regulator  38.96 
 
 
254 aa  190  2e-47  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009512  Pput_2471  CRP/FNR family transcriptional regulator  44.09 
 
 
273 aa  190  2e-47  Pseudomonas putida F1  Bacteria  normal  0.185946  normal  0.661743 
 
 
-
 
NC_007492  Pfl01_1811  Crp/FNR family transcriptional regulator  41.18 
 
 
244 aa  190  2e-47  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1961  fumarate/nitrate reduction transcriptional regulator  38.03 
 
 
250 aa  189  5e-47  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00754009 
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  39.01 
 
 
250 aa  188  5.999999999999999e-47  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
NC_008321  Shewmr4_2014  fumarate/nitrate reduction transcriptional regulator  39.01 
 
 
250 aa  188  5.999999999999999e-47  Shewanella sp. MR-4  Bacteria  normal  decreased coverage  0.00000000422436 
 
 
-
 
NC_003910  CPS_1987  fumarate/nitrate reduction transcriptional regulator  39.82 
 
 
239 aa  187  1e-46  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  43.5 
 
 
254 aa  187  1e-46  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2417  fumarate/nitrate reduction transcriptional regulator  38.5 
 
 
249 aa  187  1e-46  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0646393  decreased coverage  0.000000159166 
 
 
-
 
NC_008700  Sama_1799  fumarate/nitrate reduction transcriptional regulator  38.53 
 
 
250 aa  187  1e-46  Shewanella amazonensis SB2B  Bacteria  normal  0.417815  normal  0.180258 
 
 
-
 
NC_009665  Shew185_2162  fumarate/nitrate reduction transcriptional regulator  38.03 
 
 
250 aa  187  2e-46  Shewanella baltica OS185  Bacteria  normal  0.914647  n/a   
 
 
-
 
NC_011663  Sbal223_2222  fumarate/nitrate reduction transcriptional regulator  38.03 
 
 
250 aa  187  2e-46  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000942023  normal  0.178468 
 
 
-
 
NC_009035  Sbal_4495  fumarate/nitrate reduction transcriptional regulator  38.03 
 
 
250 aa  187  2e-46  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_1993  fumarate/nitrate reduction transcriptional regulator  38.5 
 
 
249 aa  187  2e-46  Shewanella loihica PV-4  Bacteria  normal  0.238952  normal 
 
 
-
 
NC_009997  Sbal195_2212  fumarate/nitrate reduction transcriptional regulator  38.03 
 
 
250 aa  187  2e-46  Shewanella baltica OS195  Bacteria  hitchhiker  0.00299596  normal  0.266977 
 
 
-
 
NC_009052  Sbal_2209  fumarate/nitrate reduction transcriptional regulator  38.03 
 
 
250 aa  187  2e-46  Shewanella baltica OS155  Bacteria  hitchhiker  0.00613295  n/a   
 
 
-
 
NC_009439  Pmen_2615  CRP/FNR family transcriptional regulator  41.26 
 
 
244 aa  186  3e-46  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00240538  normal  0.855877 
 
 
-
 
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