More than 300 homologs were found in PanDaTox collection
for query gene Rpic_4428 on replicon NC_010678
Organism: Ralstonia pickettii 12J



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012857  Rpic12D_4561  transcriptional regulator, Crp/Fnr family  100 
 
 
263 aa  545  1e-154  Ralstonia pickettii 12D  Bacteria  normal  normal  0.291712 
 
 
-
 
NC_010678  Rpic_4428  transcriptional regulator, Crp/Fnr family  100 
 
 
263 aa  545  1e-154  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc0190  transcription regulator protein  81.58 
 
 
266 aa  452  1.0000000000000001e-126  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.180711 
 
 
-
 
NC_007650  BTH_II0460  Crp/FNR family transcriptional regulator  55.95 
 
 
260 aa  278  6e-74  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1147  cyclic nucleotide-binding: regulatory protein, Crp  58.8 
 
 
261 aa  273  1.0000000000000001e-72  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1217  cyclic nucleotide-binding: regulatory protein, Crp  58.8 
 
 
261 aa  273  1.0000000000000001e-72  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0164  Crp/FNR family transcriptional regulator  53.09 
 
 
260 aa  273  2.0000000000000002e-72  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1016  Crp/FNR family transcriptional regulator  53.09 
 
 
260 aa  273  2.0000000000000002e-72  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2747  Crp/Fnr family transcriptional regulator  53.09 
 
 
260 aa  273  2.0000000000000002e-72  Burkholderia pseudomallei 668  Bacteria  normal  0.225266  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2604  Crp/Fnr family transcriptional regulator  53.09 
 
 
260 aa  273  2.0000000000000002e-72  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0190  Crp/FNR family transcriptional regulator  55.51 
 
 
242 aa  272  5.000000000000001e-72  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1334  Crp/FNR family transcriptional regulator  55.51 
 
 
242 aa  272  5.000000000000001e-72  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_5811  Crp/FNR family transcriptional regulator  50.59 
 
 
266 aa  269  4e-71  Burkholderia phymatum STM815  Bacteria  normal  normal  0.118405 
 
 
-
 
NC_007511  Bcep18194_B1665  Crp/FNR family transcriptional regulator  55.36 
 
 
259 aa  266  2.9999999999999995e-70  Burkholderia sp. 383  Bacteria  hitchhiker  0.00239618  normal  0.130389 
 
 
-
 
NC_010086  Bmul_4265  Crp/FNR family transcriptional regulator  51.38 
 
 
259 aa  266  2.9999999999999995e-70  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.367581  normal  0.892156 
 
 
-
 
NC_008543  Bcen2424_4355  Crp/FNR family transcriptional regulator  54.46 
 
 
259 aa  265  8e-70  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0811079  normal 
 
 
-
 
NC_008061  Bcen_4012  Crp/FNR family transcriptional regulator  54.46 
 
 
259 aa  265  8e-70  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_5999  Crp/FNR family transcriptional regulator  54.46 
 
 
259 aa  264  1e-69  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.582695  normal 
 
 
-
 
NC_007650  BTH_II1244  Crp/FNR family transcriptional regulator  54.3 
 
 
261 aa  261  8.999999999999999e-69  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3812  Crp/FNR family transcriptional regulator  52.17 
 
 
257 aa  260  1e-68  Burkholderia ambifaria AMMD  Bacteria  normal  0.279241  normal  0.577974 
 
 
-
 
NC_010087  Bmul_5904  Crp/FNR family transcriptional regulator  51.74 
 
 
257 aa  260  2e-68  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.379633  normal  0.222249 
 
 
-
 
NC_009075  BURPS668_A1636  Crp/FNR family transcriptional regulator  48.25 
 
 
259 aa  259  2e-68  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4280  Crp/FNR family transcriptional regulator  51.74 
 
 
257 aa  259  3e-68  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.0900166 
 
 
-
 
NC_007435  BURPS1710b_A0129  Crp/FNR family transcriptional regulator  52.91 
 
 
259 aa  259  4e-68  Burkholderia pseudomallei 1710b  Bacteria  normal  0.300797  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1554  Crp/FNR family transcriptional regulator  52.91 
 
 
259 aa  259  4e-68  Burkholderia pseudomallei 1106a  Bacteria  normal  0.796955  n/a   
 
 
-
 
NC_010557  BamMC406_6195  Crp/FNR family transcriptional regulator  48.65 
 
 
257 aa  258  6e-68  Burkholderia ambifaria MC40-6  Bacteria  normal  0.107166  normal  0.295507 
 
 
-
 
NC_008391  Bamb_3764  Crp/FNR family transcriptional regulator  51.28 
 
 
259 aa  256  3e-67  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0549839 
 
 
-
 
NC_010552  BamMC406_4238  Crp/FNR family transcriptional regulator  51.28 
 
 
257 aa  256  3e-67  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0460631  normal 
 
 
-
 
NC_007974  Rmet_4521  Crp/Fnr family transcriptional regulator  54.05 
 
 
257 aa  255  6e-67  Cupriavidus metallidurans CH34  Bacteria  normal  0.0161618  normal  0.0108643 
 
 
-
 
NC_010524  Lcho_2772  Crp/FNR family transcriptional regulator  52.73 
 
 
245 aa  253  2.0000000000000002e-66  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00275745 
 
 
-
 
NC_010622  Bphy_1138  Crp/FNR family transcriptional regulator  49.79 
 
 
260 aa  250  1e-65  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6315  transcriptional regulator, Crp/Fnr family  50.44 
 
 
403 aa  246  2e-64  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_1163  CRP/FNR family transcriptional regulator  50.88 
 
 
251 aa  247  2e-64  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_1047  cyclic nucleotide-binding: regulatory protein, Crp  51.25 
 
 
247 aa  246  3e-64  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_1091  CRP/FNR family transcriptional regulator  51.36 
 
 
247 aa  243  1.9999999999999999e-63  Acidovorax sp. JS42  Bacteria  normal  0.140321  normal 
 
 
-
 
NC_011992  Dtpsy_1007  transcriptional regulator, Crp/Fnr family  51.36 
 
 
242 aa  243  1.9999999999999999e-63  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2471  transcription factor Fnr  51.57 
 
 
269 aa  241  7e-63  Methylibium petroleiphilum PM1  Bacteria  normal  0.366844  normal  0.0435693 
 
 
-
 
NC_007952  Bxe_B0606  Crp/FNR family transcriptional regulator  49.12 
 
 
267 aa  241  9e-63  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.149995 
 
 
-
 
NC_010623  Bphy_4433  Crp/FNR family transcriptional regulator  51.38 
 
 
224 aa  240  2e-62  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1530  Crp/FNR family transcriptional regulator  50.45 
 
 
239 aa  240  2e-62  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_2782  Crp/FNR family transcriptional regulator  49.33 
 
 
262 aa  237  1e-61  Delftia acidovorans SPH-1  Bacteria  normal  0.0680307  normal  0.414614 
 
 
-
 
NC_008781  Pnap_3775  CRP/FNR family transcriptional regulator  46.25 
 
 
265 aa  233  2.0000000000000002e-60  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_4272  transcriptional regulator, Crp/Fnr family  50 
 
 
218 aa  233  3e-60  Burkholderia phytofirmans PsJN  Bacteria  normal  0.71016  normal  0.563993 
 
 
-
 
NC_011662  Tmz1t_1288  transcriptional regulator, Crp/Fnr family  47.48 
 
 
246 aa  230  1e-59  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_4486  Crp/FNR family transcriptional regulator  48.66 
 
 
248 aa  225  4e-58  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B3138  Crp/FNR family transcriptional regulator  48.86 
 
 
248 aa  224  8e-58  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_5008  Crp/FNR family transcriptional regulator  48.66 
 
 
249 aa  224  1e-57  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1207  Crp/FNR family transcriptional regulator  46.64 
 
 
264 aa  224  1e-57  Polaromonas sp. JS666  Bacteria  normal  0.494469  normal 
 
 
-
 
NC_010552  BamMC406_3149  Crp/FNR family transcriptional regulator  49.31 
 
 
249 aa  224  2e-57  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_5297  Crp/FNR family transcriptional regulator  49.32 
 
 
248 aa  223  2e-57  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_1937  Crp/FNR family transcriptional regulator  52.74 
 
 
223 aa  223  2e-57  Rhodoferax ferrireducens T118  Bacteria  normal  0.155753  n/a   
 
 
-
 
NC_008543  Bcen2424_5737  Crp/FNR family transcriptional regulator  48.21 
 
 
248 aa  223  3e-57  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.188641 
 
 
-
 
NC_008061  Bcen_5122  Crp/FNR family transcriptional regulator  48.21 
 
 
248 aa  223  3e-57  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1540  Crp/FNR family transcriptional regulator  46.9 
 
 
630 aa  220  1.9999999999999999e-56  Burkholderia pseudomallei 1710b  Bacteria  normal  0.18142  n/a   
 
 
-
 
NC_006349  BMAA0031  Crp/FNR family transcriptional regulator  46.9 
 
 
251 aa  219  3.9999999999999997e-56  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A0051  cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases  46.9 
 
 
251 aa  219  3.9999999999999997e-56  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1184  Crp/FNR family transcriptional regulator  46.9 
 
 
251 aa  219  3.9999999999999997e-56  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0037  Crp/FNR family transcriptional regulator  46.9 
 
 
251 aa  219  3.9999999999999997e-56  Burkholderia mallei NCTC 10247  Bacteria  normal  0.284481  n/a   
 
 
-
 
NC_008835  BMA10229_1464  Crp/FNR family transcriptional regulator  46.9 
 
 
251 aa  219  3.9999999999999997e-56  Burkholderia mallei NCTC 10229  Bacteria  normal  0.855917  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0037  Crp/FNR family transcriptional regulator  46.9 
 
 
251 aa  219  3.9999999999999997e-56  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0035  Crp/FNR family transcriptional regulator  46.9 
 
 
251 aa  219  5e-56  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_3345  Crp/FNR family transcriptional regulator  44.39 
 
 
247 aa  214  9e-55  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.797997  normal 
 
 
-
 
NC_004578  PSPTO_1666  transcriptional regulator, Crp/Fnr family  46.33 
 
 
250 aa  212  4.9999999999999996e-54  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0506299  n/a   
 
 
-
 
NC_010682  Rpic_2510  transcriptional regulator, Crp/Fnr family  47.69 
 
 
274 aa  209  3e-53  Ralstonia pickettii 12J  Bacteria  normal  normal  0.6173 
 
 
-
 
NC_007948  Bpro_1170  Crp/FNR family transcriptional regulator  42.02 
 
 
274 aa  204  1e-51  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_3034  Crp/FNR family transcriptional regulator  41.2 
 
 
269 aa  199  5e-50  Pseudomonas putida W619  Bacteria  normal  0.369454  normal 
 
 
-
 
NC_007948  Bpro_4294  Crp/FNR family transcriptional regulator  43.64 
 
 
272 aa  196  3e-49  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3287  Crp/FNR family transcriptional regulator  43.04 
 
 
265 aa  195  6e-49  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2471  CRP/FNR family transcriptional regulator  43.48 
 
 
273 aa  195  6e-49  Pseudomonas putida F1  Bacteria  normal  0.185946  normal  0.661743 
 
 
-
 
NC_008781  Pnap_0792  CRP/FNR family transcriptional regulator  42.68 
 
 
262 aa  194  1e-48  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.328451  normal 
 
 
-
 
NC_009654  Mmwyl1_2233  CRP/FNR family transcriptional regulator  41.35 
 
 
253 aa  194  2e-48  Marinomonas sp. MWYL1  Bacteria  normal  0.0375344  normal  0.791743 
 
 
-
 
NC_007347  Reut_A2034  cyclic nucleotide-binding: regulatory protein, Crp  41.15 
 
 
232 aa  192  4e-48  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2018  fumarate/nitrate reduction transcriptional regulator  41.52 
 
 
252 aa  192  5e-48  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.831368  n/a   
 
 
-
 
NC_013456  VEA_003475  fumarate and nitrate reduction regulatory protein  42.6 
 
 
248 aa  191  8e-48  Vibrio sp. Ex25  Bacteria  normal  0.292896  n/a   
 
 
-
 
NC_009379  Pnuc_0460  CRP/FNR family transcriptional regulator  42.29 
 
 
256 aa  191  1e-47  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1204  transcriptional regulator, Crp/Fnr family  41.15 
 
 
242 aa  190  2e-47  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A1045  fumarate/nitrate reduction transcriptional regulator  41.7 
 
 
250 aa  190  2e-47  Vibrio cholerae O395  Bacteria  normal  0.18077  n/a   
 
 
-
 
NC_009783  VIBHAR_02295  fumarate/nitrate reduction transcriptional regulator  42.15 
 
 
248 aa  190  2e-47  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010682  Rpic_1111  transcriptional regulator, Crp/Fnr family  41.15 
 
 
242 aa  189  2.9999999999999997e-47  Ralstonia pickettii 12J  Bacteria  normal  0.700786  normal  0.531022 
 
 
-
 
NC_003295  RSc1283  putative fumarate and nitrate reduction regulatory transcription regulator protein  40.71 
 
 
242 aa  189  5e-47  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0516193  normal  0.32826 
 
 
-
 
NC_008700  Sama_1799  fumarate/nitrate reduction transcriptional regulator  41.7 
 
 
250 aa  188  5.999999999999999e-47  Shewanella amazonensis SB2B  Bacteria  normal  0.417815  normal  0.180258 
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  42.6 
 
 
254 aa  189  5.999999999999999e-47  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010531  Pnec_1356  transcriptional regulator, Crp/Fnr family  41.41 
 
 
256 aa  188  7e-47  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0588975 
 
 
-
 
NC_007973  Rmet_2037  Crp/FNR family transcriptional regulator  41.1 
 
 
232 aa  186  4e-46  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.441781 
 
 
-
 
NC_011663  Sbal223_2222  fumarate/nitrate reduction transcriptional regulator  40.91 
 
 
250 aa  185  5e-46  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000942023  normal  0.178468 
 
 
-
 
NC_004347  SO_2356  fumarate/nitrate reduction transcriptional regulator  41.67 
 
 
254 aa  185  5e-46  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009035  Sbal_4495  fumarate/nitrate reduction transcriptional regulator  40.91 
 
 
250 aa  185  5e-46  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_2162  fumarate/nitrate reduction transcriptional regulator  40.91 
 
 
250 aa  185  5e-46  Shewanella baltica OS185  Bacteria  normal  0.914647  n/a   
 
 
-
 
NC_009997  Sbal195_2212  fumarate/nitrate reduction transcriptional regulator  40.91 
 
 
250 aa  185  5e-46  Shewanella baltica OS195  Bacteria  hitchhiker  0.00299596  normal  0.266977 
 
 
-
 
NC_009052  Sbal_2209  fumarate/nitrate reduction transcriptional regulator  40.91 
 
 
250 aa  185  5e-46  Shewanella baltica OS155  Bacteria  hitchhiker  0.00613295  n/a   
 
 
-
 
NC_012917  PC1_2105  fumarate/nitrate reduction transcriptional regulator  41.7 
 
 
248 aa  185  6e-46  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0944449  n/a   
 
 
-
 
NC_003910  CPS_1987  fumarate/nitrate reduction transcriptional regulator  40.97 
 
 
239 aa  185  7e-46  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2398  fumarate/nitrate reduction transcriptional regulator  41.7 
 
 
248 aa  185  7e-46  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I1571  fumarate/nitrate reduction transcriptional regulator  41.26 
 
 
250 aa  185  7e-46  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.75505  n/a   
 
 
-
 
NC_008340  Mlg_0319  Crp/FNR family transcriptional regulator  41.26 
 
 
262 aa  185  8e-46  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_1951  fumarate/nitrate reduction transcriptional regulator  40.91 
 
 
250 aa  184  9e-46  Shewanella putrefaciens CN-32  Bacteria  normal  0.80493  n/a   
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  40.81 
 
 
250 aa  184  1.0000000000000001e-45  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
NC_009801  EcE24377A_1546  fumarate/nitrate reduction transcriptional regulator  40.81 
 
 
250 aa  184  1.0000000000000001e-45  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  41.2 
 
 
250 aa  184  1.0000000000000001e-45  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
NC_008321  Shewmr4_2014  fumarate/nitrate reduction transcriptional regulator  41.2 
 
 
250 aa  184  1.0000000000000001e-45  Shewanella sp. MR-4  Bacteria  normal  decreased coverage  0.00000000422436 
 
 
-
 
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