More than 300 homologs were found in PanDaTox collection
for query gene Rsph17025_3610 on replicon NC_009429
Organism: Rhodobacter sphaeroides ATCC 17025



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009429  Rsph17025_3610  hypothetical protein  100 
 
 
231 aa  465  9.999999999999999e-131  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2279  Crp/FNR family transcriptional regulator  36.9 
 
 
258 aa  134  1.9999999999999998e-30  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1230  CRP/FNR family transcriptional regulator  38.29 
 
 
263 aa  123  3e-27  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_2572  crpK, Fnr-type transcriptional regulator  38.29 
 
 
263 aa  123  3e-27  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_1951  CRP/FNR family transcriptional regulator  33.66 
 
 
263 aa  117  1.9999999999999998e-25  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_1850  CRP/FNR family transcriptional regulator  35.58 
 
 
211 aa  106  3e-22  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1678  Crp/FNR family transcriptional regulator  32.99 
 
 
230 aa  104  9e-22  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.330352  normal 
 
 
-
 
NC_009952  Dshi_0660  transcriptional regulator  29.33 
 
 
249 aa  101  8e-21  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3858  Crp/FNR family transcriptional regulator  31.5 
 
 
248 aa  101  8e-21  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_1945  Crp/FNR family transcriptional regulator  31.07 
 
 
242 aa  96.3  3e-19  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_0532  CRP/FNR family transcriptional regulator  31.31 
 
 
248 aa  95.9  5e-19  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.283437 
 
 
-
 
NC_009049  Rsph17029_2353  CRP/FNR family transcriptional regulator  30.33 
 
 
248 aa  95.1  8e-19  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.689366  normal  0.139893 
 
 
-
 
NC_007493  RSP_0698  Crp-Fnr regulatory protein (FnrL)  30.33 
 
 
248 aa  95.1  8e-19  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_2118  transcriptional regulator, Crp/Fnr family  31.55 
 
 
240 aa  92  8e-18  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  hitchhiker  0.00291012 
 
 
-
 
NC_007794  Saro_2581  Crp/FNR family transcriptional regulator  28.88 
 
 
231 aa  91.7  9e-18  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.658135  n/a   
 
 
-
 
NC_007964  Nham_1258  Crp/FNR family transcriptional regulator  30.05 
 
 
241 aa  90.9  1e-17  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_2547  Crp/FNR family transcriptional regulator  29.95 
 
 
246 aa  90.9  1e-17  Ruegeria sp. TM1040  Bacteria  normal  0.389339  normal  0.365128 
 
 
-
 
NC_012850  Rleg_2360  transcriptional regulator, Crp/Fnr family  32.09 
 
 
240 aa  91.3  1e-17  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.948966  hitchhiker  0.00636029 
 
 
-
 
NC_009484  Acry_1631  CRP/FNR family transcriptional regulator  30.88 
 
 
310 aa  89.4  4e-17  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_1742  CRP/FNR family transcriptional regulator  31.77 
 
 
242 aa  89  6e-17  Sinorhizobium medicae WSM419  Bacteria  normal  0.275504  normal  0.265558 
 
 
-
 
NC_011989  Avi_2026  transcriptional activator Crp family  30.05 
 
 
241 aa  87.4  2e-16  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_2061  Crp family transcriptional regulator  28.43 
 
 
241 aa  86.7  3e-16  Nitrobacter winogradskyi Nb-255  Bacteria  hitchhiker  0.00300081  normal 
 
 
-
 
NC_009671  Oant_4644  CRP/FNR family transcriptional regulator  28.25 
 
 
232 aa  86.7  3e-16  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.739127  n/a   
 
 
-
 
NC_009484  Acry_0576  CRP/FNR family transcriptional regulator  31.41 
 
 
235 aa  84  0.000000000000002  Acidiphilium cryptum JF-5  Bacteria  normal  0.670039  n/a   
 
 
-
 
NC_010505  Mrad2831_3277  Crp/FNR family transcriptional regulator  32.76 
 
 
226 aa  83.6  0.000000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  34.57 
 
 
222 aa  83.2  0.000000000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1752  transcriptional regulator, Crp/Fnr family  32.42 
 
 
250 aa  81.6  0.00000000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.103124 
 
 
-
 
NC_009719  Plav_2039  CRP/FNR family transcriptional regulator  29.95 
 
 
242 aa  80.1  0.00000000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191538  hitchhiker  0.00387918 
 
 
-
 
NC_004310  BR0654  Crp/FNR family transcriptional regulator  30.48 
 
 
248 aa  79.7  0.00000000000003  Brucella suis 1330  Bacteria  normal  0.48838  n/a   
 
 
-
 
NC_009505  BOV_0647  nitrogen fixation regulation protein fixk  30.48 
 
 
251 aa  79  0.00000000000006  Brucella ovis ATCC 25840  Bacteria  normal  0.774151  n/a   
 
 
-
 
NC_011004  Rpal_4713  transcriptional regulator, Crp/Fnr family  27.56 
 
 
239 aa  79  0.00000000000007  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.557049  n/a   
 
 
-
 
NC_007958  RPD_1357  Crp/Fnr family transcriptional regulator  28.04 
 
 
239 aa  79  0.00000000000007  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_2634  CRP/FNR family transcriptional regulator  30.11 
 
 
249 aa  77.4  0.0000000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_4871  transcriptional regulator, Crp/Fnr family  29.94 
 
 
228 aa  77  0.0000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1377  Crp/FNR family transcriptional regulator  26.64 
 
 
239 aa  77.4  0.0000000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C0749  Crp/FNR family transcriptional regulator  27.91 
 
 
242 aa  76.6  0.0000000000003  Burkholderia xenovorans LB400  Bacteria  normal  0.887641  normal  0.079497 
 
 
-
 
NC_011894  Mnod_0422  transcriptional regulator, Crp/Fnr family  27.5 
 
 
246 aa  76.3  0.0000000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_1984  transcriptional regulator, Crp/Fnr family  30.22 
 
 
250 aa  76.3  0.0000000000004  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.312779  normal 
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  28.64 
 
 
262 aa  76.3  0.0000000000004  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_007951  Bxe_A3927  Crp/FNR family transcriptional regulator  28.31 
 
 
242 aa  76.3  0.0000000000004  Burkholderia xenovorans LB400  Bacteria  normal  0.729399  hitchhiker  0.00211875 
 
 
-
 
NC_010511  M446_0946  Crp/FNR family transcriptional regulator  30.25 
 
 
253 aa  75.9  0.0000000000005  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  normal 
 
 
-
 
NC_007925  RPC_4039  Crp/FNR family transcriptional regulator  28.04 
 
 
239 aa  75.9  0.0000000000006  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.70749  normal 
 
 
-
 
NC_011894  Mnod_5386  transcriptional regulator, Crp/Fnr family  31.29 
 
 
230 aa  75.5  0.0000000000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.662421  n/a   
 
 
-
 
NC_009485  BBta_5746  Crp/FNR family transcriptional regulator  26.67 
 
 
237 aa  73.9  0.000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.765257  normal 
 
 
-
 
NC_010725  Mpop_1302  transcriptional regulator, Crp/Fnr family  32.24 
 
 
254 aa  72.4  0.000000000005  Methylobacterium populi BJ001  Bacteria  normal  0.0109091  normal 
 
 
-
 
NC_007964  Nham_0870  transcriptional regulator FixK  25.89 
 
 
227 aa  72.4  0.000000000006  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6132  Crp/FNR family transcriptional regulator  27.81 
 
 
245 aa  72  0.000000000008  Methylobacterium sp. 4-46  Bacteria  normal  0.0884478  normal 
 
 
-
 
NC_009720  Xaut_1746  CRP/FNR family transcriptional regulator  29.95 
 
 
236 aa  72  0.000000000008  Xanthobacter autotrophicus Py2  Bacteria  normal  0.753218  normal  0.546792 
 
 
-
 
NC_010172  Mext_3505  regulatory protein Crp  30.59 
 
 
229 aa  71.2  0.00000000001  Methylobacterium extorquens PA1  Bacteria  normal  0.021842  normal 
 
 
-
 
NC_011757  Mchl_3812  transcriptional regulator, Crp/Fnr family  30.59 
 
 
229 aa  71.2  0.00000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_6270  transcriptional regulator FixK  29.59 
 
 
211 aa  71.2  0.00000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.967473  normal  0.128199 
 
 
-
 
NC_010172  Mext_1357  cyclic nucleotide-binding  32.89 
 
 
250 aa  70.9  0.00000000002  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.395788 
 
 
-
 
NC_008025  Dgeo_0106  Crp/FNR family transcriptional regulator  30.54 
 
 
254 aa  70.9  0.00000000002  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3889  transcriptional regulator, Crp/Fnr family  32.87 
 
 
229 aa  70.5  0.00000000002  Methylobacterium populi BJ001  Bacteria  normal  normal  0.128439 
 
 
-
 
NC_011757  Mchl_1557  transcriptional regulator, Crp/Fnr family  32.89 
 
 
250 aa  70.1  0.00000000003  Methylobacterium chloromethanicum CM4  Bacteria  decreased coverage  0.00717235  normal 
 
 
-
 
NC_007778  RPB_2158  Crp/FNR family transcriptional regulator  28.65 
 
 
208 aa  69.7  0.00000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.198273  normal  0.103025 
 
 
-
 
NC_011894  Mnod_3926  transcriptional regulator, Crp/Fnr family  27.27 
 
 
238 aa  68.9  0.00000000006  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  27.27 
 
 
238 aa  68.9  0.00000000006  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3266  cyclic nucleotide-binding  25.15 
 
 
220 aa  68.9  0.00000000007  Rhodopseudomonas palustris BisB5  Bacteria  normal  decreased coverage  0.00116153 
 
 
-
 
NC_009467  Acry_3214  CRP/FNR family transcriptional regulator  26.29 
 
 
230 aa  68.6  0.00000000007  Acidiphilium cryptum JF-5  Bacteria  normal  0.939046  n/a   
 
 
-
 
NC_010505  Mrad2831_0408  Crp/FNR family transcriptional regulator  28.67 
 
 
230 aa  68.9  0.00000000007  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_1951  transcriptional regulator FixK  25.79 
 
 
231 aa  68.2  0.0000000001  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_1273  cAMP-binding protein  25.12 
 
 
243 aa  68.2  0.0000000001  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_2709  transcriptional activator FtrB  27.4 
 
 
232 aa  68.2  0.0000000001  Maricaulis maris MCS10  Bacteria  normal  normal  0.0829617 
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  27.1 
 
 
231 aa  67.4  0.0000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_010511  M446_6927  Crp/FNR family transcriptional regulator  31.54 
 
 
227 aa  67.4  0.0000000002  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.422372 
 
 
-
 
NC_007925  RPC_4055  transcriptional regulator FixK  28.08 
 
 
229 aa  67  0.0000000003  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010510  Mrad2831_6249  Crp/FNR family transcriptional regulator  32 
 
 
281 aa  66.2  0.0000000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.999867 
 
 
-
 
NC_010511  M446_6107  Crp/FNR family transcriptional regulator  28.85 
 
 
227 aa  65.5  0.0000000006  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0266042 
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  25.29 
 
 
232 aa  65.9  0.0000000006  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_011894  Mnod_6164  transcriptional regulator, Crp/Fnr family  27.44 
 
 
247 aa  65.5  0.0000000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.257657  n/a   
 
 
-
 
NC_003295  RSc1283  putative fumarate and nitrate reduction regulatory transcription regulator protein  30.12 
 
 
242 aa  65.1  0.0000000008  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0516193  normal  0.32826 
 
 
-
 
NC_008789  Hhal_0917  CRP/FNR family transcriptional regulator  26.5 
 
 
254 aa  65.1  0.0000000009  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_4876  cyclic nucleotide-binding  30.35 
 
 
317 aa  64.7  0.000000001  Methylobacterium extorquens PA1  Bacteria  normal  0.155933  normal 
 
 
-
 
NC_010338  Caul_2457  Crp/FNR family transcriptional regulator  28.88 
 
 
204 aa  64.7  0.000000001  Caulobacter sp. K31  Bacteria  normal  0.325923  normal  0.600278 
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  22.05 
 
 
236 aa  64.3  0.000000002  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_010338  Caul_0629  transcriptional regulator FixK  27.95 
 
 
215 aa  63.9  0.000000002  Caulobacter sp. K31  Bacteria  normal  0.595222  normal  0.236212 
 
 
-
 
NC_007778  RPB_1361  transcriptional regulator FixK  29.33 
 
 
229 aa  63.2  0.000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0646149  normal 
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  19.7 
 
 
236 aa  63.5  0.000000003  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_011757  Mchl_5361  transcriptional regulator, Crp/Fnr family  29.85 
 
 
299 aa  63.5  0.000000003  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_1036  transcriptional regulator FixK  26.32 
 
 
231 aa  62.4  0.000000006  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4729  transcriptional regulator FixK  30.26 
 
 
230 aa  61.6  0.000000009  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  30.77 
 
 
236 aa  61.2  0.00000001  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_1464  transcriptional activator Anr  25.14 
 
 
244 aa  61.6  0.00000001  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_2975  Crp/FNR family transcriptional regulator  26.6 
 
 
220 aa  61.2  0.00000001  Caulobacter sp. K31  Bacteria  normal  0.169439  normal  0.307783 
 
 
-
 
NC_009429  Rsph17025_3611  hypothetical protein  30.73 
 
 
278 aa  61.6  0.00000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_0319  Crp/FNR family transcriptional regulator  27.13 
 
 
262 aa  61.2  0.00000001  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_3270  hypothetical protein  30 
 
 
239 aa  61.6  0.00000001  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_5417  transcriptional regulator, Crp/Fnr family  29.48 
 
 
298 aa  60.5  0.00000002  Methylobacterium populi BJ001  Bacteria  normal  0.36754  normal 
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  25.13 
 
 
231 aa  60.8  0.00000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_012850  Rleg_3301  transcriptional regulator, Crp/Fnr family  29.23 
 
 
227 aa  60.5  0.00000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.306356 
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  28.93 
 
 
352 aa  60.8  0.00000002  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  29.71 
 
 
226 aa  60.5  0.00000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_007958  RPD_1340  transcriptional regulator FixK  28.67 
 
 
229 aa  60.8  0.00000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.324269  normal 
 
 
-
 
NC_010625  Bphy_5811  Crp/FNR family transcriptional regulator  24.35 
 
 
266 aa  59.7  0.00000004  Burkholderia phymatum STM815  Bacteria  normal  normal  0.118405 
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  25.81 
 
 
231 aa  59.3  0.00000005  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  28.72 
 
 
254 aa  59.3  0.00000005  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  25.81 
 
 
231 aa  59.3  0.00000005  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  26.6 
 
 
228 aa  58.9  0.00000006  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_009485  BBta_2786  transcriptional regulator FixK  25 
 
 
229 aa  58.5  0.00000007  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0460697  normal  0.11454 
 
 
-
 
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