More than 300 homologs were found in PanDaTox collection
for query gene TM1040_2547 on replicon NC_008044
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008044  TM1040_2547  Crp/FNR family transcriptional regulator  100 
 
 
246 aa  503  9.999999999999999e-143  Ruegeria sp. TM1040  Bacteria  normal  0.389339  normal  0.365128 
 
 
-
 
NC_009049  Rsph17029_2353  CRP/FNR family transcriptional regulator  75.2 
 
 
248 aa  392  1e-108  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.689366  normal  0.139893 
 
 
-
 
NC_007493  RSP_0698  Crp-Fnr regulatory protein (FnrL)  75.2 
 
 
248 aa  392  1e-108  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0532  CRP/FNR family transcriptional regulator  77.78 
 
 
248 aa  389  1e-107  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.283437 
 
 
-
 
NC_009952  Dshi_0660  transcriptional regulator  70.17 
 
 
249 aa  363  2e-99  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3858  Crp/FNR family transcriptional regulator  67.92 
 
 
248 aa  347  1e-94  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_1850  CRP/FNR family transcriptional regulator  69.52 
 
 
211 aa  309  2.9999999999999997e-83  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_2026  transcriptional activator Crp family  44.35 
 
 
241 aa  192  4e-48  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_2581  Crp/FNR family transcriptional regulator  42.98 
 
 
231 aa  187  1e-46  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.658135  n/a   
 
 
-
 
NC_011369  Rleg2_2118  transcriptional regulator, Crp/Fnr family  42.41 
 
 
240 aa  182  5.0000000000000004e-45  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  hitchhiker  0.00291012 
 
 
-
 
NC_008048  Sala_1678  Crp/FNR family transcriptional regulator  40.43 
 
 
230 aa  178  5.999999999999999e-44  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.330352  normal 
 
 
-
 
NC_012850  Rleg_2360  transcriptional regulator, Crp/Fnr family  41.44 
 
 
240 aa  177  2e-43  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.948966  hitchhiker  0.00636029 
 
 
-
 
NC_009511  Swit_1945  Crp/FNR family transcriptional regulator  41.23 
 
 
242 aa  169  4e-41  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_2061  Crp family transcriptional regulator  38.79 
 
 
241 aa  165  5.9999999999999996e-40  Nitrobacter winogradskyi Nb-255  Bacteria  hitchhiker  0.00300081  normal 
 
 
-
 
NC_009636  Smed_1742  CRP/FNR family transcriptional regulator  38.2 
 
 
242 aa  160  1e-38  Sinorhizobium medicae WSM419  Bacteria  normal  0.275504  normal  0.265558 
 
 
-
 
NC_007964  Nham_1258  Crp/FNR family transcriptional regulator  36.96 
 
 
241 aa  159  4e-38  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_2634  CRP/FNR family transcriptional regulator  35.78 
 
 
249 aa  137  2e-31  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2279  Crp/FNR family transcriptional regulator  36.04 
 
 
258 aa  136  4e-31  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0654  Crp/FNR family transcriptional regulator  36.21 
 
 
248 aa  132  3.9999999999999996e-30  Brucella suis 1330  Bacteria  normal  0.48838  n/a   
 
 
-
 
NC_007493  RSP_2572  crpK, Fnr-type transcriptional regulator  35.44 
 
 
263 aa  131  7.999999999999999e-30  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0647  nitrogen fixation regulation protein fixk  36.21 
 
 
251 aa  131  7.999999999999999e-30  Brucella ovis ATCC 25840  Bacteria  normal  0.774151  n/a   
 
 
-
 
NC_009049  Rsph17029_1230  CRP/FNR family transcriptional regulator  35.44 
 
 
263 aa  131  7.999999999999999e-30  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_3926  transcriptional regulator, Crp/Fnr family  38.35 
 
 
238 aa  130  1.0000000000000001e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  38.35 
 
 
238 aa  130  1.0000000000000001e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_1951  CRP/FNR family transcriptional regulator  33.98 
 
 
263 aa  127  1.0000000000000001e-28  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_5746  Crp/FNR family transcriptional regulator  33.64 
 
 
237 aa  127  2.0000000000000002e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.765257  normal 
 
 
-
 
NC_009484  Acry_1631  CRP/FNR family transcriptional regulator  34.51 
 
 
310 aa  125  9e-28  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0946  Crp/FNR family transcriptional regulator  36.16 
 
 
253 aa  124  2e-27  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  normal 
 
 
-
 
NC_010172  Mext_1357  cyclic nucleotide-binding  34.38 
 
 
250 aa  122  6e-27  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.395788 
 
 
-
 
NC_011757  Mchl_1557  transcriptional regulator, Crp/Fnr family  34.38 
 
 
250 aa  121  9.999999999999999e-27  Methylobacterium chloromethanicum CM4  Bacteria  decreased coverage  0.00717235  normal 
 
 
-
 
NC_011894  Mnod_0422  transcriptional regulator, Crp/Fnr family  33.63 
 
 
246 aa  120  1.9999999999999998e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_1302  transcriptional regulator, Crp/Fnr family  33.94 
 
 
254 aa  119  4.9999999999999996e-26  Methylobacterium populi BJ001  Bacteria  normal  0.0109091  normal 
 
 
-
 
NC_007778  RPB_1377  Crp/FNR family transcriptional regulator  32.47 
 
 
239 aa  115  5e-25  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  34.4 
 
 
262 aa  115  6.9999999999999995e-25  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_007958  RPD_1357  Crp/Fnr family transcriptional regulator  32.47 
 
 
239 aa  115  6.9999999999999995e-25  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4039  Crp/FNR family transcriptional regulator  32.63 
 
 
239 aa  114  2.0000000000000002e-24  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.70749  normal 
 
 
-
 
NC_011071  Smal_1752  transcriptional regulator, Crp/Fnr family  34.45 
 
 
250 aa  112  8.000000000000001e-24  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.103124 
 
 
-
 
NC_010511  M446_6132  Crp/FNR family transcriptional regulator  32.16 
 
 
245 aa  111  9e-24  Methylobacterium sp. 4-46  Bacteria  normal  0.0884478  normal 
 
 
-
 
NC_011365  Gdia_1984  transcriptional regulator, Crp/Fnr family  34.45 
 
 
250 aa  107  1e-22  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.312779  normal 
 
 
-
 
NC_008322  Shewmr7_1961  fumarate/nitrate reduction transcriptional regulator  28.39 
 
 
250 aa  105  9e-22  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00754009 
 
 
-
 
NC_010531  Pnec_1356  transcriptional regulator, Crp/Fnr family  29.44 
 
 
256 aa  104  1e-21  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0588975 
 
 
-
 
NC_011004  Rpal_4713  transcriptional regulator, Crp/Fnr family  29.52 
 
 
239 aa  103  2e-21  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.557049  n/a   
 
 
-
 
NC_008321  Shewmr4_2014  fumarate/nitrate reduction transcriptional regulator  27.97 
 
 
250 aa  103  2e-21  Shewanella sp. MR-4  Bacteria  normal  decreased coverage  0.00000000422436 
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  27.97 
 
 
250 aa  103  2e-21  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
NC_003295  RSc1283  putative fumarate and nitrate reduction regulatory transcription regulator protein  30.53 
 
 
242 aa  102  6e-21  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0516193  normal  0.32826 
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  26.27 
 
 
250 aa  102  6e-21  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_011894  Mnod_5386  transcriptional regulator, Crp/Fnr family  35.2 
 
 
230 aa  102  7e-21  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.662421  n/a   
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  32.09 
 
 
222 aa  100  2e-20  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1993  fumarate/nitrate reduction transcriptional regulator  27.5 
 
 
249 aa  100  2e-20  Shewanella loihica PV-4  Bacteria  normal  0.238952  normal 
 
 
-
 
NC_009438  Sputcn32_1951  fumarate/nitrate reduction transcriptional regulator  27.97 
 
 
250 aa  100  2e-20  Shewanella putrefaciens CN-32  Bacteria  normal  0.80493  n/a   
 
 
-
 
NC_007912  Sde_1464  transcriptional activator Anr  30.57 
 
 
244 aa  100  3e-20  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_2162  fumarate/nitrate reduction transcriptional regulator  27.97 
 
 
250 aa  99.4  5e-20  Shewanella baltica OS185  Bacteria  normal  0.914647  n/a   
 
 
-
 
NC_011353  ECH74115_1981  fumarate/nitrate reduction transcriptional regulator  28.15 
 
 
250 aa  99.4  5e-20  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.320226 
 
 
-
 
NC_011663  Sbal223_2222  fumarate/nitrate reduction transcriptional regulator  27.97 
 
 
250 aa  99.4  5e-20  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000942023  normal  0.178468 
 
 
-
 
NC_009052  Sbal_2209  fumarate/nitrate reduction transcriptional regulator  27.97 
 
 
250 aa  99.4  5e-20  Shewanella baltica OS155  Bacteria  hitchhiker  0.00613295  n/a   
 
 
-
 
NC_009035  Sbal_4495  fumarate/nitrate reduction transcriptional regulator  27.97 
 
 
250 aa  99.4  5e-20  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_2212  fumarate/nitrate reduction transcriptional regulator  27.97 
 
 
250 aa  99.4  5e-20  Shewanella baltica OS195  Bacteria  hitchhiker  0.00299596  normal  0.266977 
 
 
-
 
NC_012880  Dd703_1864  fumarate/nitrate reduction transcriptional regulator  27.66 
 
 
250 aa  99.4  5e-20  Dickeya dadantii Ech703  Bacteria  normal  0.856056  n/a   
 
 
-
 
CP001637  EcDH1_2311  transcriptional regulator, Crp/Fnr family  28.15 
 
 
250 aa  99  6e-20  Escherichia coli DH1  Bacteria  normal  0.144598  n/a   
 
 
-
 
NC_004347  SO_2356  fumarate/nitrate reduction transcriptional regulator  27.54 
 
 
254 aa  99  6e-20  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009801  EcE24377A_1546  fumarate/nitrate reduction transcriptional regulator  28.15 
 
 
250 aa  99  6e-20  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  28.15 
 
 
250 aa  99  6e-20  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2291  fumarate/nitrate reduction transcriptional regulator  28.15 
 
 
250 aa  99  6e-20  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  28.15 
 
 
250 aa  99  6e-20  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
NC_010658  SbBS512_E1575  fumarate/nitrate reduction transcriptional regulator  28.15 
 
 
250 aa  99  6e-20  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2081  fumarate/nitrate reduction transcriptional regulator  27.66 
 
 
250 aa  98.6  7e-20  Dickeya zeae Ech1591  Bacteria  normal  0.0488524  n/a   
 
 
-
 
NC_009379  Pnuc_0460  CRP/FNR family transcriptional regulator  28.57 
 
 
256 aa  98.6  9e-20  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_2582  fumarate/nitrate reduction transcriptional regulator  28.09 
 
 
254 aa  98.6  9e-20  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_2417  fumarate/nitrate reduction transcriptional regulator  27.73 
 
 
249 aa  98.2  9e-20  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0646393  decreased coverage  0.000000159166 
 
 
-
 
NC_012917  PC1_2105  fumarate/nitrate reduction transcriptional regulator  27.16 
 
 
248 aa  98.6  9e-20  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0944449  n/a   
 
 
-
 
NC_011080  SNSL254_A1783  fumarate/nitrate reduction transcriptional regulator  27.66 
 
 
250 aa  97.8  1e-19  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.251439 
 
 
-
 
NC_011083  SeHA_C1845  fumarate/nitrate reduction transcriptional regulator  27.66 
 
 
250 aa  97.8  1e-19  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.918423  normal 
 
 
-
 
NC_011205  SeD_A1673  fumarate/nitrate reduction transcriptional regulator  27.66 
 
 
250 aa  97.8  1e-19  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.349784  normal  0.0983377 
 
 
-
 
NC_011094  SeSA_A1785  fumarate/nitrate reduction transcriptional regulator  27.66 
 
 
250 aa  97.8  1e-19  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.377507  normal  0.141635 
 
 
-
 
NC_010682  Rpic_1111  transcriptional regulator, Crp/Fnr family  29.2 
 
 
242 aa  97.8  1e-19  Ralstonia pickettii 12J  Bacteria  normal  0.700786  normal  0.531022 
 
 
-
 
NC_013421  Pecwa_2398  fumarate/nitrate reduction transcriptional regulator  27.16 
 
 
248 aa  97.8  1e-19  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B1491  fumarate/nitrate reduction transcriptional regulator  27.66 
 
 
250 aa  97.8  1e-19  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0202312  n/a   
 
 
-
 
NC_009436  Ent638_1853  fumarate/nitrate reduction transcriptional regulator  26.72 
 
 
250 aa  97.4  2e-19  Enterobacter sp. 638  Bacteria  normal  normal  0.755428 
 
 
-
 
NC_012856  Rpic12D_1204  transcriptional regulator, Crp/Fnr family  29.91 
 
 
242 aa  96.7  3e-19  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2018  fumarate/nitrate reduction transcriptional regulator  26.07 
 
 
252 aa  96.7  3e-19  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.831368  n/a   
 
 
-
 
NC_009831  Ssed_2219  fumarate/nitrate reduction transcriptional regulator  26.07 
 
 
249 aa  96.3  4e-19  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_02295  fumarate/nitrate reduction transcriptional regulator  27.2 
 
 
248 aa  96.3  4e-19  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010322  PputGB1_3830  Crp/FNR family transcriptional regulator  30.49 
 
 
244 aa  96.3  5e-19  Pseudomonas putida GB-1  Bacteria  normal  normal  0.525453 
 
 
-
 
NC_010501  PputW619_3583  Crp/FNR family transcriptional regulator  30.49 
 
 
244 aa  95.9  5e-19  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_4265  transcriptional regulator Anr  30.49 
 
 
244 aa  95.9  6e-19  Pseudomonas putida KT2440  Bacteria  normal  0.880812  normal 
 
 
-
 
NC_009512  Pput_1603  CRP/FNR family transcriptional regulator  30.49 
 
 
244 aa  95.9  6e-19  Pseudomonas putida F1  Bacteria  normal  normal  0.138297 
 
 
-
 
NC_010511  M446_6927  Crp/FNR family transcriptional regulator  33.19 
 
 
227 aa  95.1  9e-19  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.422372 
 
 
-
 
NC_004578  PSPTO_1991  transcriptional activator Anr  29.6 
 
 
244 aa  95.1  9e-19  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.695719  n/a   
 
 
-
 
NC_011757  Mchl_3812  transcriptional regulator, Crp/Fnr family  32.29 
 
 
229 aa  95.1  9e-19  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3505  regulatory protein Crp  32.29 
 
 
229 aa  95.1  9e-19  Methylobacterium extorquens PA1  Bacteria  normal  0.021842  normal 
 
 
-
 
NC_009719  Plav_2039  CRP/FNR family transcriptional regulator  31.55 
 
 
242 aa  95.1  9e-19  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191538  hitchhiker  0.00387918 
 
 
-
 
NC_009457  VC0395_A1045  fumarate/nitrate reduction transcriptional regulator  26.81 
 
 
250 aa  95.1  1e-18  Vibrio cholerae O395  Bacteria  normal  0.18077  n/a   
 
 
-
 
NC_009439  Pmen_2615  CRP/FNR family transcriptional regulator  30.43 
 
 
244 aa  94.7  1e-18  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00240538  normal  0.855877 
 
 
-
 
NC_013456  VEA_003475  fumarate and nitrate reduction regulatory protein  27.23 
 
 
248 aa  95.1  1e-18  Vibrio sp. Ex25  Bacteria  normal  0.292896  n/a   
 
 
-
 
NC_009708  YpsIP31758_1833  fumarate/nitrate reduction transcriptional regulator  25.85 
 
 
250 aa  94.4  2e-18  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3425  cyclic nucleotide-binding: regulatory protein, Crp  30.43 
 
 
244 aa  93.6  2e-18  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0533041 
 
 
-
 
NC_010159  YpAngola_A2293  fumarate/nitrate reduction transcriptional regulator  25.85 
 
 
250 aa  94.4  2e-18  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_1944  fumarate/nitrate reduction transcriptional regulator  25.85 
 
 
250 aa  94.4  2e-18  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.755264  n/a   
 
 
-
 
NC_007954  Sden_1843  fumarate/nitrate reduction transcriptional regulator  26.78 
 
 
250 aa  92.8  4e-18  Shewanella denitrificans OS217  Bacteria  normal  0.0177159  n/a   
 
 
-
 
NC_010505  Mrad2831_3277  Crp/FNR family transcriptional regulator  31.55 
 
 
226 aa  92.8  4e-18  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
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