More than 300 homologs were found in PanDaTox collection
for query gene Snas_1232 on replicon NC_013947
Organism: Stackebrandtia nassauensis DSM 44728



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013947  Snas_1232  transcriptional regulator, Crp/Fnr family  100 
 
 
235 aa  454  1e-127  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_4977  transcriptional regulator, Crp/Fnr family  59.07 
 
 
234 aa  242  3.9999999999999997e-63  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.111601 
 
 
-
 
NC_009953  Sare_0070  cyclic nucleotide-binding protein  50.46 
 
 
227 aa  201  9.999999999999999e-51  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.376283 
 
 
-
 
NC_013131  Caci_7216  transcriptional regulator, Crp/Fnr family  36.57 
 
 
246 aa  142  4e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.726682  normal 
 
 
-
 
NC_013093  Amir_6844  transcriptional regulator, Crp/Fnr family  35.29 
 
 
235 aa  142  4e-33  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0901192  n/a   
 
 
-
 
NC_009921  Franean1_1677  cyclic nucleotide-binding protein  38.67 
 
 
258 aa  134  9.999999999999999e-31  Frankia sp. EAN1pec  Bacteria  normal  0.506462  normal  0.511537 
 
 
-
 
NC_013595  Sros_1608  putative transcriptional regulator, Crp/Fnr family  38.92 
 
 
248 aa  133  1.9999999999999998e-30  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_5850  transcriptional regulator, Crp/Fnr family  34.39 
 
 
223 aa  131  7.999999999999999e-30  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0120826  n/a   
 
 
-
 
NC_013093  Amir_5851  transcriptional regulator, Crp/Fnr family  33.19 
 
 
242 aa  130  1.0000000000000001e-29  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0930905  n/a   
 
 
-
 
NC_009921  Franean1_5506  Crp/FNR family transcriptional regulator  35.94 
 
 
246 aa  129  5.0000000000000004e-29  Frankia sp. EAN1pec  Bacteria  normal  0.324567  normal  0.438631 
 
 
-
 
NC_013093  Amir_5511  transcriptional regulator, Crp/Fnr family  37.62 
 
 
227 aa  128  7.000000000000001e-29  Actinosynnema mirum DSM 43827  Bacteria  normal  0.360617  n/a   
 
 
-
 
NC_013510  Tcur_1167  transcriptional regulator, Crp/Fnr family  37.04 
 
 
231 aa  123  2e-27  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0781257  n/a   
 
 
-
 
NC_013595  Sros_6885  putative transcriptional regulator, Crp/Fnr family  37.04 
 
 
240 aa  122  6e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_0602  transcriptional regulator, Crp/Fnr family  36.32 
 
 
225 aa  119  3e-26  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.628877 
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  34.55 
 
 
228 aa  112  5e-24  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  35.05 
 
 
228 aa  107  2e-22  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_1118  transcriptional regulator, Crp/Fnr family  33.48 
 
 
240 aa  105  6e-22  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  32.8 
 
 
224 aa  104  1e-21  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  34.04 
 
 
226 aa  103  2e-21  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  33.52 
 
 
226 aa  103  3e-21  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  33.16 
 
 
225 aa  102  4e-21  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  34.76 
 
 
224 aa  102  5e-21  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  31.44 
 
 
228 aa  102  6e-21  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  33.16 
 
 
225 aa  101  1e-20  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  33.52 
 
 
225 aa  99.4  4e-20  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_1644  Crp/FNR family transcriptional regulator  30.92 
 
 
223 aa  98.6  7e-20  Salinispora arenicola CNS-205  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_8981  putative transcriptional regulator, Crp/Fnr family  30.52 
 
 
222 aa  98.6  8e-20  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  32.28 
 
 
225 aa  97.8  1e-19  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  33.87 
 
 
220 aa  97.1  2e-19  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  32.12 
 
 
225 aa  95.9  4e-19  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  29.25 
 
 
225 aa  95.1  9e-19  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  32.8 
 
 
225 aa  93.2  3e-18  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_2941  Crp/FNR family transcriptional regulator  26.98 
 
 
235 aa  92.8  4e-18  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_1659  cyclic nucleotide-binding  29.95 
 
 
223 aa  92.4  6e-18  Salinispora tropica CNB-440  Bacteria  normal  0.834954  normal 
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  27.6 
 
 
225 aa  90.9  2e-17  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  25.81 
 
 
236 aa  89.4  5e-17  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_013510  Tcur_2257  transcriptional regulator, Crp/Fnr family  32.26 
 
 
234 aa  89  6e-17  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00000784359  n/a   
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  29.13 
 
 
226 aa  88.2  9e-17  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_009511  Swit_2706  Crp/FNR family transcriptional regulator  27.85 
 
 
228 aa  88.2  9e-17  Sphingomonas wittichii RW1  Bacteria  normal  0.154877  normal 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  30 
 
 
226 aa  88.2  1e-16  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_008148  Rxyl_2076  Crp/FNR family transcriptional regulator  31.13 
 
 
234 aa  88.2  1e-16  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.398696  n/a   
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  25.35 
 
 
236 aa  88.2  1e-16  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  31.32 
 
 
226 aa  87.4  2e-16  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  28.88 
 
 
225 aa  86.3  3e-16  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_013093  Amir_5783  transcriptional regulator, Crp/Fnr family  30.19 
 
 
212 aa  86.3  3e-16  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.00268451  n/a   
 
 
-
 
NC_010816  BLD_0979  cAMP-binding protein  28.1 
 
 
239 aa  86.3  3e-16  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  24.77 
 
 
236 aa  86.7  3e-16  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  24.77 
 
 
236 aa  86.7  3e-16  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_013721  HMPREF0424_0303  cyclic nucleotide-binding domain protein  27.14 
 
 
236 aa  85.5  6e-16  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.232206 
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  26.76 
 
 
224 aa  85.5  7e-16  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_014158  Tpau_3932  transcriptional regulator, Crp/Fnr family  31.72 
 
 
224 aa  85.5  7e-16  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.571672  n/a   
 
 
-
 
NC_013131  Caci_8903  transcriptional regulator, Crp/Fnr family  31.52 
 
 
224 aa  85.1  9e-16  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  25.82 
 
 
226 aa  84.3  0.000000000000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  26.89 
 
 
243 aa  84  0.000000000000002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_013235  Namu_0718  transcriptional regulator, Crp/Fnr family  31.18 
 
 
224 aa  83.2  0.000000000000003  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0723  Crp/FNR family transcriptional regulator  30.73 
 
 
228 aa  83.2  0.000000000000003  Methylobacterium sp. 4-46  Bacteria  normal  0.362046  normal  0.190371 
 
 
-
 
NC_009485  BBta_0559  Crp/FNR family transcriptional regulator  26.44 
 
 
225 aa  83.6  0.000000000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.338488  normal  0.42035 
 
 
-
 
NC_008048  Sala_1169  Crp/FNR family transcriptional regulator  28.24 
 
 
227 aa  83.2  0.000000000000003  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0303416  normal  0.0506186 
 
 
-
 
NC_013441  Gbro_0505  cyclic nucleotide-binding protein  31.18 
 
 
224 aa  82.8  0.000000000000004  Gordonia bronchialis DSM 43247  Bacteria  normal  0.287437  n/a   
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  26.24 
 
 
219 aa  82.4  0.000000000000005  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  32.14 
 
 
251 aa  82.4  0.000000000000006  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  28.02 
 
 
227 aa  82.4  0.000000000000006  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011887  Mnod_8112  transcriptional regulator, Crp/Fnr family  28.77 
 
 
229 aa  82  0.000000000000008  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  29.52 
 
 
242 aa  81.6  0.000000000000009  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_007777  Francci3_4286  Crp/FNR family transcriptional regulator  35.55 
 
 
241 aa  81.3  0.00000000000001  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_13707  Cpr/FNR family transcriptional regulator  30.65 
 
 
224 aa  81.3  0.00000000000001  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0333343 
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  25.24 
 
 
226 aa  80.9  0.00000000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_4818  Crp/FNR family transcriptional regulator  30.65 
 
 
224 aa  80.9  0.00000000000002  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_5205  Crp/FNR family transcriptional regulator  30.65 
 
 
224 aa  80.9  0.00000000000002  Mycobacterium sp. JLS  Bacteria  normal  0.703662  hitchhiker  0.000819508 
 
 
-
 
NC_009921  Franean1_0328  Crp/FNR family transcriptional regulator  34.88 
 
 
246 aa  80.1  0.00000000000002  Frankia sp. EAN1pec  Bacteria  normal  0.0277272  normal  0.0570772 
 
 
-
 
NC_013159  Svir_36130  cAMP-binding protein  32.26 
 
 
224 aa  80.9  0.00000000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.758224 
 
 
-
 
NC_008705  Mkms_4904  Crp/FNR family transcriptional regulator  30.65 
 
 
224 aa  80.9  0.00000000000002  Mycobacterium sp. KMS  Bacteria  normal  normal  0.385516 
 
 
-
 
NC_008726  Mvan_5435  CRP/FNR family transcriptional regulator  30.65 
 
 
224 aa  80.5  0.00000000000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.397858 
 
 
-
 
NC_009338  Mflv_1371  CRP/FNR family transcriptional regulator  30.65 
 
 
224 aa  80.1  0.00000000000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0955358 
 
 
-
 
NC_009636  Smed_0098  CRP/FNR family transcriptional regulator  27.59 
 
 
234 aa  79.3  0.00000000000005  Sinorhizobium medicae WSM419  Bacteria  normal  0.2435  normal 
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  25.13 
 
 
231 aa  79.3  0.00000000000005  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_013385  Adeg_1955  transcriptional regulator, Crp/Fnr family  26.67 
 
 
229 aa  79  0.00000000000006  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  23.7 
 
 
226 aa  79  0.00000000000007  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1592  transcriptional regulator, Crp/Fnr family  29.5 
 
 
228 aa  79  0.00000000000007  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013093  Amir_0253  transcriptional regulator, Crp/Fnr family  31.72 
 
 
224 aa  78.6  0.00000000000008  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  26.15 
 
 
231 aa  77.8  0.0000000000001  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1262  CRP/FNR family transcriptional regulator  26.67 
 
 
222 aa  77.8  0.0000000000001  Desulfotomaculum reducens MI-1  Bacteria  normal  0.247212  n/a   
 
 
-
 
NC_010815  Glov_3725  transcriptional regulator, Crp/Fnr family  26.98 
 
 
237 aa  77.8  0.0000000000001  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.0054318  normal  0.342144 
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  26.15 
 
 
231 aa  77.8  0.0000000000001  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_0049  Crp/FNR family transcriptional regulator  31.06 
 
 
252 aa  78.2  0.0000000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.422683  n/a   
 
 
-
 
NC_011769  DvMF_1708  transcriptional regulator, Crp/Fnr family  28.65 
 
 
229 aa  77  0.0000000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  24.77 
 
 
243 aa  76.6  0.0000000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  25.12 
 
 
231 aa  76.6  0.0000000000003  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_008309  HS_0139  cAMP-regulatory protein  27.27 
 
 
214 aa  76.3  0.0000000000004  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_4388  CRP/FNR family transcriptional regulator  31.32 
 
 
225 aa  75.9  0.0000000000005  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_0632  putative transcriptional regulator, Crp/Fnr family  33.33 
 
 
236 aa  75.5  0.0000000000007  Actinosynnema mirum DSM 43827  Bacteria  normal  0.649143  n/a   
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  27.08 
 
 
226 aa  75.5  0.0000000000007  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_010002  Daci_4994  cyclic nucleotide-binding protein  26.94 
 
 
247 aa  75.1  0.0000000000009  Delftia acidovorans SPH-1  Bacteria  normal  0.103725  normal 
 
 
-
 
NC_007952  Bxe_B0027  Crp/FNR family transcriptional regulator  26.37 
 
 
237 aa  74.3  0.000000000001  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_7045  transcriptional regulator, Crp/Fnr family  26.07 
 
 
237 aa  73.9  0.000000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  0.601598  normal  0.0108856 
 
 
-
 
NC_011992  Dtpsy_0976  transcriptional regulator, Crp/Fnr family  28.77 
 
 
258 aa  73.9  0.000000000002  Acidovorax ebreus TPSY  Bacteria  normal  0.859751  n/a   
 
 
-
 
NC_009380  Strop_4322  cyclic nucleotide-binding  32.8 
 
 
225 aa  73.9  0.000000000002  Salinispora tropica CNB-440  Bacteria  normal  normal  0.0230513 
 
 
-
 
NC_013739  Cwoe_2918  transcriptional regulator, Crp/Fnr family  29.77 
 
 
226 aa  74.3  0.000000000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.172063  normal  0.392966 
 
 
-
 
NC_008782  Ajs_1058  CRP/FNR family transcriptional regulator  28.77 
 
 
258 aa  73.9  0.000000000002  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_4596  transcriptional regulator, Crp/Fnr family  32.04 
 
 
230 aa  74.3  0.000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
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