Gene Smed_0098 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0098 
Symbol 
ID5320926 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp109731 
End bp110435 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content63% 
IMG OID640789030 
ProductCRP/FNR family transcriptional regulator 
Protein accessionYP_001325793 
Protein GI150395326 
COG category[T] Signal transduction mechanisms 
COG ID[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.2435 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGAAG TCATCCGGAG TTCCGCTTTC TGGCGGTCCT TCCCTATTTT CGAAGAGTTC 
GATAACGAAG CCCTGTGCGA GCTCGCCGGC ATCGCCAGCT ACCGGAAATG GTCCGCGGGG
ACGGTCATCT TCCAACGCGG CGACCAGGGC GATTATATGA TCGTGCTGGT TTCCGGACGC
ATCAAGCTTT CGCTGTTCAC GCCGCAAGGC CGCGAACTCC TGTTGCGACA GCACGAGGGC
GGAGCGCTCT TCGGCGAAAT GGCGCTGCTT GACGGTCAGC CGCGATCGGC GGATGCGACC
GCCGTCACCG CCGCCGACGG CTACGTGATC GGCCGGAAGG ATTTCCTCGC GTTCATCACC
CACAGGCCGA AAACCGCAGA GGCGGTCATC CGCTTCCTCT GCGCGCAATT GCGCGATACG
ACGGACAGGC TGGAAACCAT CGCGCTCTAC GACCTGAATG CCCGCGTCGC CCGCTTCTTC
CTGGCAACGC TCCGCCAGAT CCACGGCAGC GAACTGCCCG AAAGCGCCAA TCTCCGTCTG
ACGCTCAGCC AGACGGATAT CGCCTCGATC CTTGGAGCAA GCCGCCCAAA GGTGAACCGG
GCCATCCTTT CACTGGAAGA GAGCGGCGCG ATCAAGCGCG CGGACGGCAT CATCTGCTGC
AATGTCGGGC GTCTGCTCAG CATAGCCGAC CCGGAAGAGG ACTGA
 
Protein sequence
MAEVIRSSAF WRSFPIFEEF DNEALCELAG IASYRKWSAG TVIFQRGDQG DYMIVLVSGR 
IKLSLFTPQG RELLLRQHEG GALFGEMALL DGQPRSADAT AVTAADGYVI GRKDFLAFIT
HRPKTAEAVI RFLCAQLRDT TDRLETIALY DLNARVARFF LATLRQIHGS ELPESANLRL
TLSQTDIASI LGASRPKVNR AILSLEESGA IKRADGIICC NVGRLLSIAD PEED