More than 300 homologs were found in PanDaTox collection
for query gene Svir_36130 on replicon NC_013159
Organism: Saccharomonospora viridis DSM 43017



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013159  Svir_36130  cAMP-binding protein  100 
 
 
224 aa  451  1.0000000000000001e-126  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.758224 
 
 
-
 
NC_013093  Amir_0253  transcriptional regulator, Crp/Fnr family  92.41 
 
 
224 aa  399  9.999999999999999e-111  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_0505  cyclic nucleotide-binding protein  83.04 
 
 
224 aa  355  2.9999999999999997e-97  Gordonia bronchialis DSM 43247  Bacteria  normal  0.287437  n/a   
 
 
-
 
NC_008726  Mvan_5435  CRP/FNR family transcriptional regulator  82.14 
 
 
224 aa  355  2.9999999999999997e-97  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.397858 
 
 
-
 
NC_008146  Mmcs_4818  Crp/FNR family transcriptional regulator  81.7 
 
 
224 aa  354  5.999999999999999e-97  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_5205  Crp/FNR family transcriptional regulator  81.7 
 
 
224 aa  354  5.999999999999999e-97  Mycobacterium sp. JLS  Bacteria  normal  0.703662  hitchhiker  0.000819508 
 
 
-
 
NC_008705  Mkms_4904  Crp/FNR family transcriptional regulator  81.7 
 
 
224 aa  354  5.999999999999999e-97  Mycobacterium sp. KMS  Bacteria  normal  normal  0.385516 
 
 
-
 
NC_009565  TBFG_13707  Cpr/FNR family transcriptional regulator  81.25 
 
 
224 aa  352  2e-96  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0333343 
 
 
-
 
NC_014158  Tpau_3932  transcriptional regulator, Crp/Fnr family  81.25 
 
 
224 aa  353  2e-96  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.571672  n/a   
 
 
-
 
NC_009338  Mflv_1371  CRP/FNR family transcriptional regulator  81.7 
 
 
224 aa  353  2e-96  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0955358 
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  71.88 
 
 
225 aa  343  1e-93  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0718  transcriptional regulator, Crp/Fnr family  77.23 
 
 
224 aa  332  4e-90  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  65.62 
 
 
224 aa  310  1e-83  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_4322  cyclic nucleotide-binding  72.77 
 
 
225 aa  307  8e-83  Salinispora tropica CNB-440  Bacteria  normal  normal  0.0230513 
 
 
-
 
NC_009953  Sare_4762  Crp/FNR family transcriptional regulator  72.32 
 
 
225 aa  306  2.0000000000000002e-82  Salinispora arenicola CNS-205  Bacteria  normal  0.900483  hitchhiker  0.0000929699 
 
 
-
 
NC_009338  Mflv_4388  CRP/FNR family transcriptional regulator  66.52 
 
 
225 aa  285  2.9999999999999996e-76  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  55.61 
 
 
226 aa  268  5e-71  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  57.85 
 
 
228 aa  266  1e-70  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  56.05 
 
 
225 aa  266  2e-70  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  56.22 
 
 
220 aa  264  8.999999999999999e-70  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  55.61 
 
 
226 aa  263  2e-69  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  56.76 
 
 
242 aa  259  2e-68  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  55.41 
 
 
228 aa  258  4e-68  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  56.7 
 
 
224 aa  258  5.0000000000000005e-68  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  56.5 
 
 
225 aa  257  1e-67  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  54.91 
 
 
228 aa  256  3e-67  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  54.71 
 
 
226 aa  254  8e-67  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  55.76 
 
 
226 aa  247  9e-65  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  52.89 
 
 
225 aa  246  3e-64  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  54.22 
 
 
225 aa  246  3e-64  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  54.22 
 
 
225 aa  244  6e-64  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  54.22 
 
 
225 aa  244  9e-64  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_0328  Crp/FNR family transcriptional regulator  60.26 
 
 
246 aa  241  9e-63  Frankia sp. EAN1pec  Bacteria  normal  0.0277272  normal  0.0570772 
 
 
-
 
NC_007777  Francci3_4286  Crp/FNR family transcriptional regulator  59.39 
 
 
241 aa  238  5.999999999999999e-62  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8903  transcriptional regulator, Crp/Fnr family  52.68 
 
 
224 aa  235  4e-61  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  53.78 
 
 
225 aa  233  1.0000000000000001e-60  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  50.67 
 
 
225 aa  231  5e-60  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_010816  BLD_0979  cAMP-binding protein  42.92 
 
 
239 aa  195  6e-49  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_0303  cyclic nucleotide-binding domain protein  42.6 
 
 
236 aa  194  9e-49  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.232206 
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  36.67 
 
 
243 aa  150  2e-35  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_009921  Franean1_1101  Crp/FNR family transcriptional regulator  39.9 
 
 
246 aa  147  1.0000000000000001e-34  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_3629  Crp/FNR family transcriptional regulator  39.9 
 
 
263 aa  146  2.0000000000000003e-34  Frankia sp. CcI3  Bacteria  normal  normal  0.332638 
 
 
-
 
NC_009953  Sare_3499  Crp/FNR family transcriptional regulator  31.78 
 
 
230 aa  137  1e-31  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00506626 
 
 
-
 
NC_009380  Strop_3269  CRP/FNR family transcriptional regulator  31.31 
 
 
230 aa  136  3.0000000000000003e-31  Salinispora tropica CNB-440  Bacteria  normal  0.883713  normal 
 
 
-
 
NC_013946  Mrub_2129  Crp/Fnr family transcriptional regulator  37.21 
 
 
225 aa  134  9e-31  Meiothermus ruber DSM 1279  Bacteria  normal  0.185639  normal  0.344505 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  31.8 
 
 
225 aa  134  9e-31  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  32.08 
 
 
226 aa  134  9.999999999999999e-31  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  30.73 
 
 
225 aa  133  1.9999999999999998e-30  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2074  transcriptional regulator, Crp/Fnr family  36.28 
 
 
225 aa  133  3e-30  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.971908 
 
 
-
 
NC_013947  Snas_5052  transcriptional regulator, Crp/Fnr family  31.98 
 
 
228 aa  132  3.9999999999999996e-30  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.267336 
 
 
-
 
NC_009972  Haur_0049  Crp/FNR family transcriptional regulator  35.94 
 
 
252 aa  130  1.0000000000000001e-29  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.422683  n/a   
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  30.7 
 
 
227 aa  130  2.0000000000000002e-29  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  32.38 
 
 
226 aa  127  2.0000000000000002e-28  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  30.48 
 
 
226 aa  125  5e-28  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_011004  Rpal_4520  transcriptional regulator, Crp/Fnr family  30.48 
 
 
236 aa  123  2e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  29.65 
 
 
243 aa  123  3e-27  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  32.8 
 
 
231 aa  120  1.9999999999999998e-26  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_009953  Sare_1644  Crp/FNR family transcriptional regulator  35.29 
 
 
223 aa  119  3e-26  Salinispora arenicola CNS-205  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  30.59 
 
 
225 aa  119  3.9999999999999996e-26  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1284  transcriptional regulator, Crp/Fnr family  29.72 
 
 
224 aa  119  3.9999999999999996e-26  Variovorax paradoxus S110  Bacteria  normal  0.304913  n/a   
 
 
-
 
NC_013216  Dtox_2928  transcriptional regulator, Crp/Fnr family  31.9 
 
 
232 aa  119  4.9999999999999996e-26  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.39759 
 
 
-
 
NC_009380  Strop_1659  cyclic nucleotide-binding  35.57 
 
 
223 aa  118  7e-26  Salinispora tropica CNB-440  Bacteria  normal  0.834954  normal 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  30.95 
 
 
226 aa  117  9.999999999999999e-26  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_010424  Daud_0783  CRP/FNR family transcriptional regulator  33.51 
 
 
217 aa  117  9.999999999999999e-26  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_1061  Crp family transcriptional regulator  34.39 
 
 
214 aa  115  3.9999999999999997e-25  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0336611  n/a   
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  32.72 
 
 
231 aa  115  3.9999999999999997e-25  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_008261  CPF_1250  Crp/FNR family transcriptional regulator  30.37 
 
 
236 aa  115  3.9999999999999997e-25  Clostridium perfringens ATCC 13124  Bacteria  normal  0.403908  n/a   
 
 
-
 
NC_009767  Rcas_3427  Crp/FNR family transcriptional regulator  35.35 
 
 
223 aa  115  6.9999999999999995e-25  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0598833  hitchhiker  0.00496827 
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  30.59 
 
 
231 aa  115  6.9999999999999995e-25  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  30 
 
 
251 aa  115  6.9999999999999995e-25  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_013440  Hoch_2081  transcriptional regulator, Crp/Fnr family  30.88 
 
 
229 aa  115  7.999999999999999e-25  Haliangium ochraceum DSM 14365  Bacteria  normal  0.264181  normal 
 
 
-
 
NC_008262  CPR_1062  Crp/FNR family transcriptional regulator  29.91 
 
 
236 aa  114  8.999999999999998e-25  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  29.05 
 
 
239 aa  114  1.0000000000000001e-24  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_011831  Cagg_0349  transcriptional regulator, Crp/Fnr family  31.02 
 
 
222 aa  114  1.0000000000000001e-24  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.00000192919 
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  31.51 
 
 
234 aa  114  2.0000000000000002e-24  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  30.1 
 
 
228 aa  113  2.0000000000000002e-24  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  28.21 
 
 
223 aa  112  5e-24  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_012560  Avin_22000  transcriptional regulator, Crp/Fnr family  28.97 
 
 
235 aa  112  5e-24  Azotobacter vinelandii DJ  Bacteria  normal  0.457493  n/a   
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  29.95 
 
 
236 aa  112  6e-24  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_1482  CRP/FNR family transcriptional regulator  31.28 
 
 
235 aa  111  8.000000000000001e-24  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000000238682  n/a   
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  30.7 
 
 
224 aa  111  8.000000000000001e-24  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  28.64 
 
 
236 aa  111  9e-24  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_009253  Dred_1262  CRP/FNR family transcriptional regulator  29.9 
 
 
222 aa  111  1.0000000000000001e-23  Desulfotomaculum reducens MI-1  Bacteria  normal  0.247212  n/a   
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  27.23 
 
 
236 aa  110  1.0000000000000001e-23  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  29.09 
 
 
228 aa  110  1.0000000000000001e-23  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_007298  Daro_1294  cyclic nucleotide-binding: regulatory protein, Crp  26.96 
 
 
220 aa  110  2.0000000000000002e-23  Dechloromonas aromatica RCB  Bacteria  normal  0.957461  normal  0.413121 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  25.84 
 
 
219 aa  110  2.0000000000000002e-23  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_013385  Adeg_1955  transcriptional regulator, Crp/Fnr family  29.38 
 
 
229 aa  110  2.0000000000000002e-23  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_1951  Crp/FNR family transcriptional regulator  34.27 
 
 
222 aa  110  2.0000000000000002e-23  Ruegeria sp. TM1040  Bacteria  normal  0.861655  normal  0.0267012 
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  27.23 
 
 
236 aa  110  2.0000000000000002e-23  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  28.17 
 
 
236 aa  110  2.0000000000000002e-23  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  30 
 
 
227 aa  109  3e-23  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_010678  Rpic_4483  transcriptional regulator, Crp/Fnr family  35.26 
 
 
243 aa  109  4.0000000000000004e-23  Ralstonia pickettii 12J  Bacteria  normal  normal  0.183908 
 
 
-
 
NC_008148  Rxyl_0860  Crp/FNR family transcriptional regulator  30.05 
 
 
234 aa  109  4.0000000000000004e-23  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.693979  n/a   
 
 
-
 
NC_010511  M446_0723  Crp/FNR family transcriptional regulator  29.95 
 
 
228 aa  109  4.0000000000000004e-23  Methylobacterium sp. 4-46  Bacteria  normal  0.362046  normal  0.190371 
 
 
-
 
NC_013739  Cwoe_0602  transcriptional regulator, Crp/Fnr family  31.61 
 
 
225 aa  109  4.0000000000000004e-23  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.628877 
 
 
-
 
NC_012857  Rpic12D_4617  transcriptional regulator, Crp/Fnr family  35.26 
 
 
243 aa  109  4.0000000000000004e-23  Ralstonia pickettii 12D  Bacteria  normal  0.652735  normal 
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  29.3 
 
 
229 aa  108  6e-23  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_013132  Cpin_2386  transcriptional regulator, Crp/Fnr family  28.64 
 
 
230 aa  108  9.000000000000001e-23  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0267635  normal  0.395563 
 
 
-
 
NC_007948  Bpro_3800  Crp/FNR family transcriptional regulator  29.58 
 
 
225 aa  108  1e-22  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
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