| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4456 |
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| Symbol | |
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| ID | 6412140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 4789740 |
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| End bp | 4793987 |
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| Gene Length | 4248 bp |
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| Protein Length | 1415 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642714338 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_001993427 |
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| Protein GI | 192292822 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGCTGAAG ATACGCCCGG CGGGCACCTG GGCCGCATAG ACGCGGTCCC AGACAGTCTT
TTTCTGGGCC GCGGCGAACT GGCGTCGCTG ATGCGCGCAT TCGATTGGGC ATCGACCCCG
ATCGGACTGC CGGAGAGCTG GCCGCAGGCG CTCAAGACCG CGGTTCGCAT CATGCTGACC
TCGCAACAGC CGATCTGGAT CGGCTGGGGC ACGGAGCTGA CCTATCTCTA TAACGATCCC
TACAAGTCGA TCATCGGCGG CAAGCACCCA TGGGCACTCG GCCGGCCGAC TTCGGAAGTC
TGGTCCGAAA TCTGGGAAGA TATCGCCCCG CTGCTCGCCA AGGCGACCAG CGGCCATGAG
GGCACCTATG TCGAGGCCCA GCTCCTGATC ATGGAGCGAA ACGGCTTTCC CGAGGAAACC
TACTACACCT TCTCCTACAG CCCGATTCCG ACCGATGACG GCTCACCGGG CGGCATCTTC
TGCGCCAACA CGGACGATAC CCAGCGGGTC ATCACCGAGC GGCAACTGTC GCTGCTGCGC
GATCTTGCCG CTAGCGCTGC AGAATCCCGC AGCGTCGGGC AAGCCTGCGA ACGGAGCGCC
GCCGCGCTCG CCACCGATCC TCAGGACTTG CCATTCGCGC TCATCTATCT GACCGACCTC
GGCGGCGGTC ACGCCGAACT TGCCGCCTCG TCCGGGATCG ATGCCAGCCA TCCCGCGGTC
AAGCCGACGC TGGCGCTGGC GGGCGGTGAC GAGCCCTGGC CCGTCGCCGA AGCCTTCCGT
CTCAACGCGC CGGTCGTGGT GCCGGACCTC CGTGACCGGT TCGGCGTTGC ATTTCCGACC
GGCGGGTGGC GCCAGCCGCC GACTCGGGCG GTGGTGCTGC CGATCCCGGC GAGCGGCGAC
ACCGGCCGCT CCGGCCTCCT GATTGCTGGG CTCAACCCGT TCCGGCTGTA CGATAGCGCC
TACCAGGACT TCCTCGCCTT GGTCTCCGGC CAGATCTCGT CGGCGATCAC CAACGCCGAC
GCCTATCAAG AGGAGCGCCG CCGCGCCGAG GCGCTGGCCG AGATCGACCG CGCCAAGACC
GCGTTCTTCT CCAACGTCAG CCACGAATTC CGGACGCCGC TGACGCTGAT GCTGAGTCCG
CTGGAAGAAG CGCTGGGCCG CGATGGTATT GCGGACGAAC AACGCACCCT GCTCGGCATC
GCTCACCGTA ACGGCCTGCG GCTGCTGAAG CTGGTCAACA CCCTGCTCGA TTTCGCCCGG
ATCGAGGCCG GCCGCGTCAC CGCACATTTC ACCCCGGTCG ACCTGTCGTC GTTCACCGCC
GAACTCGCCT CGAATTTCCG CTCAGCGCTC GACCGTGCCG GCCTGCGCTT CGTGATCGAA
GCGCCACCGC TGCCGCAGCC GGTCTATGTC GATCGCGACA TGTGGGAGAA GATCGTCCTC
AACTTGCTGT CCAACGCATT CAAGTTCACC TTCGAAGGAG AAATCGTAGT CCGCGTTGGT
CCCGATCCGG ACGGCCGTCA CGCCGTGATC GAAGTCAGCG ACACCGGCAC CGGCATCCCG
GAGGCCGAGA TCCCGCATCT GTTCGAGCGG TTTCGCCGGG TCGAGGGCGC GCGCGGCCGC
TCGATCGAAG GCAGCGGGAT CGGACTGGCG CTGGTGCAGG AGCTGATCAA GCTGCACAGC
GGCTCGATCG ACGTCGAGAG CGAGATCGGT CGTGGCTCGA CCTTCCGCGT GACCCTGCCG
TTCGGCTCCG CGCACCTTCC AGCCGTCCGG CCGCGGCACG CCGCGCTGCA GGTCTCGACC
AATGTCCGCG CCCAGGCCTA TCTCGACGAG GCGATCGGCT GGCTCGATGA AGGCGGCGAT
GCCGATCTGC CGGCAGCTTC CGGCGCGCAG GATCTCGGCA TCGTTAGCGC GCCTGCCGCT
GGCAGACCGC ATATTCTGCT CGCCGACGAC AACCACGACA TGCGCGACTA CGTCGCCCGG
CTGCTCGGCG ATGCCTATGA GGTCGAAGCT GTTGGCGACG GCGTCGCGGC GCTCGAAGCG
GTGAAAAAGC GTCGGCCGGA TCTGGTGCTC AGCGACGTGA TGATGCCGCG GCTCGACGGC
CTCGGTCTTT TGAAAGCACT GCGCAGCGAT CCGGCGGTGG CTGACCTGCC GGTGATCTTC
CTGTCGGCGC GTGCCGGGGA AGAAGCCAAG CTGGAGGGCC TGGAGGCGGG CGCCGACGAC
TATCTCAGCA AGCCATTCAG CGCCCGCGAG CTGCTCACGC GCGTTCGCGC CAATCTCGAC
ACCGCGGCGA TCCGGCGCAC GGCGCTGCGG ACCGAATACG CGCTGCGCCA GGAAGCGCAG
GCTGCCCGTC AGCACGCCGA AGGCATCCTG GCCTCGATCA GCGACGGCTT CATCGCACTC
GATGAGCAGT ATCGGTTCAC TTACGTCAAC GCCGCCGCCG AACGGCTGAT CGCCAGCACC
GCGGGCGAGC TGATCGGCAA GGTGTATTGG GACGTCTACC CGATGATGCT CGGCACCAAG
ATCGAGCAAG CCTATCGCCG GGCGATGACC GAGCGCGTCG CCTGCGAGTT CGAAAGTTAT
CATCCGCCGA GCAAGCGCTG GTTCGAACTG CGGGTGGCGC CGACCAACGG CAAGAGCATC
TCGGTGTATT TCCGCGACAT CACCGAGCAG AAGAAAGCCG AGGCGGCGCT ACGCGACATC
AACGAGCAGC TCGAAGAGCA GGTGGCGGAG CGCACCGCCG AACTGCAGCA AAAGGAAGCC
CGTCTGCGCA CCATCTTCGC GGCGAGCTAC ACTTATCAGG CGCTGCTCGA CGTCGACGGC
GTCGTGCTCG ACGCCAACCG TACCTCGCTC GCCGGAATCG GCGGCCAGCT CGAGGACGTA
ATCGGCAAGC CGGTGTGGGC GACACCGTGG TTCGGCAGCA CGCCAGGGCT GCCTGAGATG
ATCCGCAGCG ACATCGCCGT GGTCGCGGCT GGCGAGACGG TGCGGCGCGA ACTTCACGTC
AACCTGCCGG CTGGCGGCTG GCGCTGGTTC GATCTGCAGA TGCGCCCGGT GCAAGACCCG
CAGGGCCAGG TGATCGCGAT CGTGCCCGAG GCGGTCGACA TCACCGAACG CCGCAAGGCC
GAAGAAGCAT TCCGGCAGGC GCAAAAGATG GAAGCGATCG GCCAGCTCAC CGGCGGCGTC
GCGCACGACT TCAACAACAT GCTGACGGTG ATCCGGTCGT CAGCCGATCT GCTGCGCCGG
CGCGAGCTGC CGCCGGAGCG GGTCCGCCGC TATGTCGATG CGATCTCCGA CACCGCCGAC
CGCGCTGCCA AGCTGACCGG TCAGCTTCTC ACCTTCGCGC GCCGCCACGC GCAGAACCGC
GAAGTGTTCG ACGCGGCCGA GCACATCGAG GACGTCTCCG ACATGCTGAA GACCGCGCTC
GGCTCCCGCG CGGTGTTCAA TCTCGACATC GCCGAGCGGC CGTTGCCGGT CGAAGCCGAT
ACCAATCAGT TCGACGCTGC GCTGGTCAAT CTGGTGGCCA ACGCCCGCGA CGCGATGGAC
GGCCACGGCA CCCTCACCGT CTCGGTGACC CGCTCGGCGC CGACGCCCCA GGAGGCCGCC
GCAGGCAGCC GTGGTTTCGT CGAGGTGTCG ATCGCCGATA CCGGCTGCGG CATTCCACGC
GAGCAGATCG AACGGATCTT CGAGCCGTTC TTCACCACCA AGGACATCGG CCGCGGCACA
GGCCTTGGAT TGTCGCAGGT CTACGGCTTC GTCCAGCAGT CCGGCGGCAC CATCAATGTC
GACAGCGCGA TCGGCTGCGG CACCACGATC ACGCTCCGGC TGCCGCTCAG CGACAAACCG
ATCCAGCGCC GCAACGGCAA TGGCAGCAAC GCCGTCGATG GCCGGCAGCG CGGCTGCATC
CTGGTGGTCG AGGATAACGC CGAAGTCGGC GAGTTCTCCA CCCAGCTGCT CCATGACCTC
GGCTACCAGA CCGTGCTCGC CTCCTCCGGT GAACAGGCGC TGGCTCTGCT CGGCGATAAC
GCCAAGCGTT TCGACCTGGT GCTGAGCGAC GTGGCGATGC CGGGCATGGA CGGCGTGACG
CTGGGCCGGG AGATCAAGAA GCGTTTGCCG GAGCTGCCCG TGGTGCTGAA CTCCGGCTAC
GCCCACATGC TGGCCGACGA GGACCACGGC TTCGAGCTGC TGCACAAGCC GTATTCGGTC
GAGGATCTAT CGAAAGTCCT GCGGAAGGCG ATGGCCGACC GGACCTGA
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| Protein sequence | MAEDTPGGHL GRIDAVPDSL FLGRGELASL MRAFDWASTP IGLPESWPQA LKTAVRIMLT
SQQPIWIGWG TELTYLYNDP YKSIIGGKHP WALGRPTSEV WSEIWEDIAP LLAKATSGHE
GTYVEAQLLI MERNGFPEET YYTFSYSPIP TDDGSPGGIF CANTDDTQRV ITERQLSLLR
DLAASAAESR SVGQACERSA AALATDPQDL PFALIYLTDL GGGHAELAAS SGIDASHPAV
KPTLALAGGD EPWPVAEAFR LNAPVVVPDL RDRFGVAFPT GGWRQPPTRA VVLPIPASGD
TGRSGLLIAG LNPFRLYDSA YQDFLALVSG QISSAITNAD AYQEERRRAE ALAEIDRAKT
AFFSNVSHEF RTPLTLMLSP LEEALGRDGI ADEQRTLLGI AHRNGLRLLK LVNTLLDFAR
IEAGRVTAHF TPVDLSSFTA ELASNFRSAL DRAGLRFVIE APPLPQPVYV DRDMWEKIVL
NLLSNAFKFT FEGEIVVRVG PDPDGRHAVI EVSDTGTGIP EAEIPHLFER FRRVEGARGR
SIEGSGIGLA LVQELIKLHS GSIDVESEIG RGSTFRVTLP FGSAHLPAVR PRHAALQVST
NVRAQAYLDE AIGWLDEGGD ADLPAASGAQ DLGIVSAPAA GRPHILLADD NHDMRDYVAR
LLGDAYEVEA VGDGVAALEA VKKRRPDLVL SDVMMPRLDG LGLLKALRSD PAVADLPVIF
LSARAGEEAK LEGLEAGADD YLSKPFSARE LLTRVRANLD TAAIRRTALR TEYALRQEAQ
AARQHAEGIL ASISDGFIAL DEQYRFTYVN AAAERLIAST AGELIGKVYW DVYPMMLGTK
IEQAYRRAMT ERVACEFESY HPPSKRWFEL RVAPTNGKSI SVYFRDITEQ KKAEAALRDI
NEQLEEQVAE RTAELQQKEA RLRTIFAASY TYQALLDVDG VVLDANRTSL AGIGGQLEDV
IGKPVWATPW FGSTPGLPEM IRSDIAVVAA GETVRRELHV NLPAGGWRWF DLQMRPVQDP
QGQVIAIVPE AVDITERRKA EEAFRQAQKM EAIGQLTGGV AHDFNNMLTV IRSSADLLRR
RELPPERVRR YVDAISDTAD RAAKLTGQLL TFARRHAQNR EVFDAAEHIE DVSDMLKTAL
GSRAVFNLDI AERPLPVEAD TNQFDAALVN LVANARDAMD GHGTLTVSVT RSAPTPQEAA
AGSRGFVEVS IADTGCGIPR EQIERIFEPF FTTKDIGRGT GLGLSQVYGF VQQSGGTINV
DSAIGCGTTI TLRLPLSDKP IQRRNGNGSN AVDGRQRGCI LVVEDNAEVG EFSTQLLHDL
GYQTVLASSG EQALALLGDN AKRFDLVLSD VAMPGMDGVT LGREIKKRLP ELPVVLNSGY
AHMLADEDHG FELLHKPYSV EDLSKVLRKA MADRT
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