255 homologs were found in PanDaTox collection
for query gene Cpin_2609 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013132  Cpin_2609  transcriptional regulator, Crp/Fnr family  100 
 
 
212 aa  439  9.999999999999999e-123  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.111906 
 
 
-
 
NC_009441  Fjoh_4871  CRP/FNR family transcriptional regulator  51.47 
 
 
208 aa  228  5e-59  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0245964  n/a   
 
 
-
 
NC_014230  CA2559_11833  transcriptional regulator, Crp family protein  40.3 
 
 
208 aa  162  4.0000000000000004e-39  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_6174  transcriptional regulator, Crp/Fnr family  37.44 
 
 
212 aa  147  1.0000000000000001e-34  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013732  Slin_6930  transcriptional regulator, Crp/Fnr family  37.98 
 
 
211 aa  146  2.0000000000000003e-34  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_12618  transcriptional regulator, Crp family protein  39.59 
 
 
210 aa  145  5e-34  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_002950  PG1573  Crp family transcriptional regulator  31.09 
 
 
283 aa  130  1.0000000000000001e-29  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_008740  Maqu_2052  CRP/FNR family transcriptional regulator  31.46 
 
 
213 aa  100  1e-20  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1459  transcriptional regulator, Crp/Fnr family  27.78 
 
 
228 aa  95.5  5e-19  Thauera sp. MZ1T  Bacteria  normal  0.351279  n/a   
 
 
-
 
NC_007643  Rru_A1245  Crp/FNR family transcriptional regulator  30.73 
 
 
216 aa  92.8  3e-18  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.61444  n/a   
 
 
-
 
NC_009012  Cthe_2978  Crp/FNR family transcriptional regulator  28.12 
 
 
235 aa  92.8  3e-18  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_0428  Crp family transcriptional regulator  26.06 
 
 
201 aa  92  6e-18  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_4775  Crp/FNR family transcriptional regulator  29.23 
 
 
224 aa  90.9  1e-17  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_3649  cyclic nucleotide-binding: regulatory protein, Crp  29.21 
 
 
222 aa  86.7  2e-16  Dechloromonas aromatica RCB  Bacteria  normal  0.111908  normal 
 
 
-
 
NC_011761  AFE_0119  transcriptional regulator, Crp/Fnr family  29.19 
 
 
220 aa  86.3  3e-16  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.701779  n/a   
 
 
-
 
NC_009485  BBta_3690  cyclic nucleotide-binding protein  27.14 
 
 
224 aa  86.3  3e-16  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.142322  normal 
 
 
-
 
NC_008576  Mmc1_3202  Crp/FNR family transcriptional regulator  26.67 
 
 
220 aa  86.3  3e-16  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000000322643  normal 
 
 
-
 
NC_011206  Lferr_0120  transcriptional regulator, Crp/Fnr family  29.19 
 
 
231 aa  86.3  3e-16  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_2521  transcriptional regulator  24.63 
 
 
225 aa  84.3  0.000000000000001  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.0399516 
 
 
-
 
NC_007958  RPD_1260  Crp/Fnr family transcriptional regulator  27.54 
 
 
230 aa  84  0.000000000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.611189 
 
 
-
 
NC_008043  TM1040_3643  Crp/FNR family transcriptional regulator  28.26 
 
 
221 aa  83.6  0.000000000000002  Ruegeria sp. TM1040  Bacteria  normal  0.621489  normal 
 
 
-
 
NC_011830  Dhaf_1507  transcriptional regulator, Crp/Fnr family  26.84 
 
 
227 aa  83.6  0.000000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00368382  n/a   
 
 
-
 
NC_010524  Lcho_0203  Crp/FNR family transcriptional regulator  25.12 
 
 
247 aa  80.1  0.00000000000002  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.270076 
 
 
-
 
NC_008781  Pnap_3266  CRP/FNR family transcriptional regulator  27.22 
 
 
222 aa  80.5  0.00000000000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1158  Crp/FNR family transcriptional regulator  26.83 
 
 
224 aa  79.7  0.00000000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.1478 
 
 
-
 
NC_011901  Tgr7_1360  putative transcriptional regulator, Crp/Fnr family  25.12 
 
 
223 aa  77.8  0.0000000000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0740  Crp/FNR family transcriptional regulator  29.7 
 
 
224 aa  77.8  0.0000000000001  Clostridium phytofermentans ISDg  Bacteria  normal  0.194826  n/a   
 
 
-
 
NC_011831  Cagg_2104  transcriptional regulator, Crp/Fnr family  22.4 
 
 
229 aa  75.9  0.0000000000004  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_2963  Crp/FNR family transcriptional regulator  23.04 
 
 
218 aa  74.7  0.0000000000009  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.281309  n/a   
 
 
-
 
NC_009049  Rsph17029_1610  CRP/FNR family transcriptional regulator  23.04 
 
 
218 aa  74.7  0.0000000000009  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.503286  normal  0.0459235 
 
 
-
 
NC_007925  RPC_4303  Crp/FNR family transcriptional regulator  27.27 
 
 
224 aa  74.3  0.000000000001  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.50399  normal  0.0335378 
 
 
-
 
NC_011004  Rpal_1280  transcriptional regulator, Crp/Fnr family  23.32 
 
 
223 aa  74.3  0.000000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_1844  CRP/FNR family transcriptional regulator  24.72 
 
 
240 aa  72.4  0.000000000005  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.128261  normal  0.368407 
 
 
-
 
NC_007908  Rfer_0022  Crp/FNR family transcriptional regulator  24.76 
 
 
229 aa  70.9  0.00000000001  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012039  Cla_0784  transcriptional regulator, Crp/Fnr family  22.15 
 
 
201 aa  70.9  0.00000000001  Campylobacter lari RM2100  Bacteria  normal  0.706158  n/a   
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  26.53 
 
 
227 aa  70.5  0.00000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_0460  Crp/FNR family transcriptional regulator  26.16 
 
 
232 aa  63.9  0.000000002  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.884408 
 
 
-
 
NC_007347  Reut_A1147  cyclic nucleotide-binding: regulatory protein, Crp  25.13 
 
 
261 aa  61.6  0.000000009  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1217  cyclic nucleotide-binding: regulatory protein, Crp  25.13 
 
 
261 aa  61.6  0.000000009  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_2212  fumarate/nitrate reduction transcriptional regulator  26.4 
 
 
250 aa  61.2  0.00000001  Shewanella baltica OS195  Bacteria  hitchhiker  0.00299596  normal  0.266977 
 
 
-
 
NC_009052  Sbal_2209  fumarate/nitrate reduction transcriptional regulator  26.4 
 
 
250 aa  61.2  0.00000001  Shewanella baltica OS155  Bacteria  hitchhiker  0.00613295  n/a   
 
 
-
 
NC_011663  Sbal223_2222  fumarate/nitrate reduction transcriptional regulator  26.4 
 
 
250 aa  61.2  0.00000001  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000942023  normal  0.178468 
 
 
-
 
NC_009665  Shew185_2162  fumarate/nitrate reduction transcriptional regulator  26.4 
 
 
250 aa  61.2  0.00000001  Shewanella baltica OS185  Bacteria  normal  0.914647  n/a   
 
 
-
 
NC_009035  Sbal_4495  fumarate/nitrate reduction transcriptional regulator  26.4 
 
 
250 aa  61.2  0.00000001  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_2014  fumarate/nitrate reduction transcriptional regulator  26.8 
 
 
250 aa  60.5  0.00000002  Shewanella sp. MR-4  Bacteria  normal  decreased coverage  0.00000000422436 
 
 
-
 
NC_008322  Shewmr7_1961  fumarate/nitrate reduction transcriptional regulator  25.89 
 
 
250 aa  60.5  0.00000002  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00754009 
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  26.8 
 
 
250 aa  60.5  0.00000002  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
NC_004347  SO_2356  fumarate/nitrate reduction transcriptional regulator  26.29 
 
 
254 aa  59.7  0.00000003  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  23.04 
 
 
250 aa  59.7  0.00000003  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_007498  Pcar_2562  cyclic AMP receptor protein  26.09 
 
 
222 aa  59.3  0.00000004  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.553837  n/a   
 
 
-
 
NC_009438  Sputcn32_1951  fumarate/nitrate reduction transcriptional regulator  25.89 
 
 
250 aa  58.9  0.00000005  Shewanella putrefaciens CN-32  Bacteria  normal  0.80493  n/a   
 
 
-
 
NC_010625  Bphy_5811  Crp/FNR family transcriptional regulator  24.75 
 
 
266 aa  58.5  0.00000007  Burkholderia phymatum STM815  Bacteria  normal  normal  0.118405 
 
 
-
 
NC_010622  Bphy_1138  Crp/FNR family transcriptional regulator  25.53 
 
 
260 aa  58.2  0.00000009  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA2120  Crp/FNR family transcriptional regulator  25.13 
 
 
245 aa  58.2  0.0000001  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6315  transcriptional regulator, Crp/Fnr family  26.56 
 
 
403 aa  57.4  0.0000002  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_3232  cyclic nucleotide-binding protein  24.86 
 
 
212 aa  57.4  0.0000002  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  24.42 
 
 
226 aa  56.2  0.0000003  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_009092  Shew_1993  fumarate/nitrate reduction transcriptional regulator  22.75 
 
 
249 aa  55.8  0.0000004  Shewanella loihica PV-4  Bacteria  normal  0.238952  normal 
 
 
-
 
NC_008700  Sama_1799  fumarate/nitrate reduction transcriptional regulator  25.89 
 
 
250 aa  56.2  0.0000004  Shewanella amazonensis SB2B  Bacteria  normal  0.417815  normal  0.180258 
 
 
-
 
NC_007498  Pcar_1491  Crp/FNR family transcriptional regulator  22.47 
 
 
224 aa  55.5  0.0000006  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000413534  n/a   
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  24.85 
 
 
227 aa  55.5  0.0000007  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_010506  Swoo_2417  fumarate/nitrate reduction transcriptional regulator  22.75 
 
 
249 aa  55.1  0.0000008  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0646393  decreased coverage  0.000000159166 
 
 
-
 
NC_007974  Rmet_4521  Crp/Fnr family transcriptional regulator  25 
 
 
257 aa  55.1  0.0000009  Cupriavidus metallidurans CH34  Bacteria  normal  0.0161618  normal  0.0108643 
 
 
-
 
NC_009831  Ssed_2219  fumarate/nitrate reduction transcriptional regulator  22.75 
 
 
249 aa  54.3  0.000001  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007435  BURPS1710b_A0129  Crp/FNR family transcriptional regulator  26.63 
 
 
259 aa  53.5  0.000002  Burkholderia pseudomallei 1710b  Bacteria  normal  0.300797  n/a   
 
 
-
 
NC_009075  BURPS668_A1636  Crp/FNR family transcriptional regulator  26.63 
 
 
259 aa  53.5  0.000002  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1554  Crp/FNR family transcriptional regulator  26.63 
 
 
259 aa  53.5  0.000002  Burkholderia pseudomallei 1106a  Bacteria  normal  0.796955  n/a   
 
 
-
 
NC_011757  Mchl_3673  transcriptional regulator, Crp/Fnr family  19.91 
 
 
254 aa  53.1  0.000003  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.43296  normal 
 
 
-
 
NC_011757  Mchl_4199  cyclic nucleotide-binding protein  23.84 
 
 
260 aa  53.1  0.000003  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_2102  CRP/FNR family transcriptional regulator  21.86 
 
 
227 aa  53.1  0.000003  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_5122  Crp/FNR family transcriptional regulator  23.74 
 
 
248 aa  52.8  0.000003  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2018  fumarate/nitrate reduction transcriptional regulator  24.87 
 
 
252 aa  53.1  0.000003  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.831368  n/a   
 
 
-
 
NC_008543  Bcen2424_5737  Crp/FNR family transcriptional regulator  23.74 
 
 
248 aa  52.8  0.000003  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.188641 
 
 
-
 
NC_009457  VC0395_A1045  fumarate/nitrate reduction transcriptional regulator  24.34 
 
 
250 aa  53.1  0.000003  Vibrio cholerae O395  Bacteria  normal  0.18077  n/a   
 
 
-
 
NC_011830  Dhaf_0880  transcriptional regulator, Crp/Fnr family  23.93 
 
 
219 aa  53.1  0.000003  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.812688  n/a   
 
 
-
 
NC_010172  Mext_3348  cyclic nucleotide-binding  19.91 
 
 
254 aa  53.1  0.000003  Methylobacterium extorquens PA1  Bacteria  normal  0.181039  normal 
 
 
-
 
NC_010159  YpAngola_A2293  fumarate/nitrate reduction transcriptional regulator  24.19 
 
 
250 aa  52.4  0.000005  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_4486  Crp/FNR family transcriptional regulator  23.74 
 
 
248 aa  52.4  0.000005  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B3138  Crp/FNR family transcriptional regulator  23.74 
 
 
248 aa  52.4  0.000005  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_003475  fumarate and nitrate reduction regulatory protein  23.28 
 
 
248 aa  52.4  0.000005  Vibrio sp. Ex25  Bacteria  normal  0.292896  n/a   
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  21.95 
 
 
225 aa  52.4  0.000005  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1833  fumarate/nitrate reduction transcriptional regulator  24.19 
 
 
250 aa  52.4  0.000006  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_5297  Crp/FNR family transcriptional regulator  26.4 
 
 
248 aa  52  0.000006  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_1944  fumarate/nitrate reduction transcriptional regulator  24.19 
 
 
250 aa  52.4  0.000006  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.755264  n/a   
 
 
-
 
NC_008699  Noca_1641  cyclic nucleotide-binding  21.14 
 
 
267 aa  52  0.000007  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II1244  Crp/FNR family transcriptional regulator  26.63 
 
 
261 aa  51.6  0.000008  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1798  transcriptional regulator, Crp/Fnr family  20.66 
 
 
224 aa  51.6  0.000009  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.112724  normal  0.701218 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  22.83 
 
 
219 aa  51.6  0.000009  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_009972  Haur_1297  Crp/FNR family transcriptional regulator  24.73 
 
 
222 aa  51.2  0.00001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  22.99 
 
 
236 aa  51.2  0.00001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_4187  transcriptional regulator, Crp/Fnr family  19.91 
 
 
254 aa  50.4  0.00002  Methylobacterium populi BJ001  Bacteria  normal  0.338954  normal 
 
 
-
 
NC_010552  BamMC406_4280  Crp/FNR family transcriptional regulator  25.81 
 
 
257 aa  50.4  0.00002  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.0900166 
 
 
-
 
NC_010623  Bphy_4433  Crp/FNR family transcriptional regulator  23.33 
 
 
224 aa  50.4  0.00002  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_1843  fumarate/nitrate reduction transcriptional regulator  23.35 
 
 
250 aa  50.8  0.00002  Shewanella denitrificans OS217  Bacteria  normal  0.0177159  n/a   
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  22.99 
 
 
236 aa  50.8  0.00002  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_009485  BBta_6822  Crp/FNR family transcriptional regulator  24.54 
 
 
239 aa  50.8  0.00002  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_02295  fumarate/nitrate reduction transcriptional regulator  23.28 
 
 
248 aa  50.1  0.00002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008391  Bamb_3812  Crp/FNR family transcriptional regulator  25.81 
 
 
257 aa  50.4  0.00002  Burkholderia ambifaria AMMD  Bacteria  normal  0.279241  normal  0.577974 
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  22.82 
 
 
228 aa  50.4  0.00002  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  21.94 
 
 
229 aa  50.1  0.00002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>