More than 300 homologs were found in PanDaTox collection
for query gene Dhaf_0880 on replicon NC_011830
Organism: Desulfitobacterium hafniense DCB-2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011830  Dhaf_0880  transcriptional regulator, Crp/Fnr family  100 
 
 
219 aa  453  1e-127  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.812688  n/a   
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  29.77 
 
 
225 aa  102  4e-21  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  31.9 
 
 
226 aa  100  2e-20  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  31.16 
 
 
226 aa  99.8  3e-20  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  34.08 
 
 
225 aa  97.8  1e-19  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  33.52 
 
 
225 aa  95.5  5e-19  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  29.68 
 
 
228 aa  95.1  7e-19  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  36.31 
 
 
225 aa  94.7  1e-18  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_009972  Haur_2884  Crp/FNR family transcriptional regulator  31.03 
 
 
218 aa  92  5e-18  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.161359  n/a   
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  28.11 
 
 
225 aa  91.7  8e-18  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  32.4 
 
 
225 aa  91.3  1e-17  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  29.77 
 
 
228 aa  90.9  1e-17  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  28.73 
 
 
243 aa  91.3  1e-17  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_009523  RoseRS_0292  CRP/FNR family transcriptional regulator  29.25 
 
 
224 aa  91.3  1e-17  Roseiflexus sp. RS-1  Bacteria  normal  0.210312  normal  0.0189188 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  29.09 
 
 
224 aa  89  5e-17  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0629  transcriptional regulator, Crp/Fnr family  27.31 
 
 
230 aa  88.6  6e-17  Geobacter lovleyi SZ  Bacteria  decreased coverage  0.0000285446  n/a   
 
 
-
 
NC_012560  Avin_47010  Carbon monoxide oxidation transcription regulator, Crp/Fnr family: CooA  32.57 
 
 
220 aa  88.6  7e-17  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1233  transcriptional regulator, Crp/Fnr family  33.73 
 
 
225 aa  87.4  1e-16  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0234193  normal  0.501568 
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  32.28 
 
 
242 aa  87.4  1e-16  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_007519  Dde_3027  Crp/FNR family transcriptional regulator  29.73 
 
 
216 aa  87.4  2e-16  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  34.66 
 
 
220 aa  87  2e-16  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  32.42 
 
 
225 aa  87  2e-16  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0252  Crp/FNR family transcriptional regulator  29.03 
 
 
218 aa  85.9  4e-16  Roseiflexus castenholzii DSM 13941  Bacteria  unclonable  0.00000185636  normal  0.131428 
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  27.69 
 
 
231 aa  86.3  4e-16  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_013093  Amir_0253  transcriptional regulator, Crp/Fnr family  29.77 
 
 
224 aa  84  0.000000000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  31.28 
 
 
226 aa  83.6  0.000000000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  28.31 
 
 
225 aa  84  0.000000000000002  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  26.98 
 
 
228 aa  84  0.000000000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  29.61 
 
 
225 aa  84  0.000000000000002  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  30.56 
 
 
224 aa  84  0.000000000000002  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_4596  transcriptional regulator, Crp/Fnr family  30.52 
 
 
230 aa  84  0.000000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  29.95 
 
 
243 aa  83.2  0.000000000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_013512  Sdel_0390  cyclic nucleotide-binding protein  26.87 
 
 
218 aa  83.2  0.000000000000003  Sulfurospirillum deleyianum DSM 6946  Bacteria  hitchhiker  0.000226333  n/a   
 
 
-
 
NC_014158  Tpau_3932  transcriptional regulator, Crp/Fnr family  26.98 
 
 
224 aa  82.8  0.000000000000004  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.571672  n/a   
 
 
-
 
NC_011146  Gbem_0066  transcriptional regulator, Crp/Fnr family  29.44 
 
 
220 aa  82.4  0.000000000000005  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0383  putative transcriptional regulator, Crp/Fnr family  32.57 
 
 
225 aa  82.4  0.000000000000005  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.164826  n/a   
 
 
-
 
NC_013946  Mrub_2129  Crp/Fnr family transcriptional regulator  26.89 
 
 
225 aa  82.4  0.000000000000005  Meiothermus ruber DSM 1279  Bacteria  normal  0.185639  normal  0.344505 
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  30.61 
 
 
226 aa  82  0.000000000000006  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_013159  Svir_36130  cAMP-binding protein  28.84 
 
 
224 aa  82  0.000000000000006  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.758224 
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  32.18 
 
 
225 aa  82  0.000000000000007  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_0505  cyclic nucleotide-binding protein  29.3 
 
 
224 aa  81.6  0.000000000000008  Gordonia bronchialis DSM 43247  Bacteria  normal  0.287437  n/a   
 
 
-
 
NC_009972  Haur_0049  Crp/FNR family transcriptional regulator  28.22 
 
 
252 aa  81.6  0.000000000000008  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.422683  n/a   
 
 
-
 
NC_013946  Mrub_0884  Crp/Fnr family transcriptional regulator  26.96 
 
 
214 aa  81.6  0.000000000000009  Meiothermus ruber DSM 1279  Bacteria  normal  0.163926  normal 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  28.77 
 
 
226 aa  81.3  0.00000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_009338  Mflv_4388  CRP/FNR family transcriptional regulator  28.84 
 
 
225 aa  80.9  0.00000000000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  26.67 
 
 
227 aa  80.9  0.00000000000001  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1089  Crp/FNR family transcriptional regulator  26.59 
 
 
218 aa  80.5  0.00000000000002  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.3876 
 
 
-
 
NC_007925  RPC_4494  Crp/FNR family transcriptional regulator  31.33 
 
 
232 aa  80.5  0.00000000000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.164578 
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  24.64 
 
 
223 aa  80.5  0.00000000000002  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  25.24 
 
 
226 aa  80.1  0.00000000000002  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  25.62 
 
 
219 aa  80.5  0.00000000000002  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_008609  Ppro_2444  Crp/FNR family transcriptional regulator  25 
 
 
238 aa  80.9  0.00000000000002  Pelobacter propionicus DSM 2379  Bacteria  decreased coverage  0.000577484  n/a   
 
 
-
 
NC_013235  Namu_0718  transcriptional regulator, Crp/Fnr family  29.3 
 
 
224 aa  80.1  0.00000000000003  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_5435  CRP/FNR family transcriptional regulator  28.84 
 
 
224 aa  79.7  0.00000000000003  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.397858 
 
 
-
 
NC_009429  Rsph17025_3237  hypothetical protein  31.69 
 
 
261 aa  79.3  0.00000000000004  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0723  Crp/FNR family transcriptional regulator  26.32 
 
 
228 aa  79.3  0.00000000000004  Methylobacterium sp. 4-46  Bacteria  normal  0.362046  normal  0.190371 
 
 
-
 
NC_008228  Patl_3367  Crp/FNR family transcriptional regulator  26.42 
 
 
230 aa  79.3  0.00000000000004  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  28.38 
 
 
225 aa  79  0.00000000000005  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_2074  transcriptional regulator, Crp/Fnr family  27.5 
 
 
225 aa  78.6  0.00000000000006  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.971908 
 
 
-
 
NC_008146  Mmcs_4818  Crp/FNR family transcriptional regulator  28.37 
 
 
224 aa  78.6  0.00000000000007  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4904  Crp/FNR family transcriptional regulator  28.37 
 
 
224 aa  78.6  0.00000000000007  Mycobacterium sp. KMS  Bacteria  normal  normal  0.385516 
 
 
-
 
NC_009077  Mjls_5205  Crp/FNR family transcriptional regulator  28.37 
 
 
224 aa  78.6  0.00000000000007  Mycobacterium sp. JLS  Bacteria  normal  0.703662  hitchhiker  0.000819508 
 
 
-
 
NC_010725  Mpop_4187  transcriptional regulator, Crp/Fnr family  26.75 
 
 
254 aa  78.2  0.00000000000008  Methylobacterium populi BJ001  Bacteria  normal  0.338954  normal 
 
 
-
 
NC_009338  Mflv_1371  CRP/FNR family transcriptional regulator  28.37 
 
 
224 aa  78.6  0.00000000000008  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0955358 
 
 
-
 
NC_008751  Dvul_1134  CRP/FNR family transcriptional regulator  30.32 
 
 
223 aa  78.2  0.00000000000008  Desulfovibrio vulgaris DP4  Bacteria  normal  0.972162  normal  0.0613651 
 
 
-
 
NC_007643  Rru_A1431  Crp/FNR family transcriptional regulator  27.93 
 
 
222 aa  78.2  0.00000000000009  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_22000  transcriptional regulator, Crp/Fnr family  26.73 
 
 
235 aa  78.2  0.00000000000009  Azotobacter vinelandii DJ  Bacteria  normal  0.457493  n/a   
 
 
-
 
NC_014212  Mesil_2833  transcriptional regulator, Crp/Fnr family  25.98 
 
 
213 aa  78.2  0.0000000000001  Meiothermus silvanus DSM 9946  Bacteria  normal  0.0320601  normal  0.661336 
 
 
-
 
NC_007794  Saro_2016  Crp/FNR family transcriptional regulator  30.69 
 
 
229 aa  77.8  0.0000000000001  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0776172  n/a   
 
 
-
 
NC_013739  Cwoe_2918  transcriptional regulator, Crp/Fnr family  28.7 
 
 
226 aa  78.2  0.0000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.172063  normal  0.392966 
 
 
-
 
NC_011769  DvMF_2234  transcriptional regulator, Crp/Fnr family  36.13 
 
 
280 aa  77  0.0000000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011830  Dhaf_3790  transcriptional regulator, Crp/Fnr family  26.01 
 
 
226 aa  77  0.0000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.000000171716  n/a   
 
 
-
 
NC_011666  Msil_0800  transcriptional regulator, Crp/Fnr family  33.57 
 
 
224 aa  76.6  0.0000000000003  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0302672 
 
 
-
 
NC_013131  Caci_8903  transcriptional regulator, Crp/Fnr family  29.82 
 
 
224 aa  76.3  0.0000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_13707  Cpr/FNR family transcriptional regulator  27.44 
 
 
224 aa  75.9  0.0000000000004  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0333343 
 
 
-
 
NC_012560  Avin_46100  cAMP-regulatory protein  26.02 
 
 
215 aa  76.3  0.0000000000004  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  24.1 
 
 
247 aa  75.9  0.0000000000005  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1802  transcriptional regulator, Crp/Fnr family  25.6 
 
 
238 aa  75.1  0.0000000000008  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0932  transcriptional regulator, Crp/Fnr family  26.92 
 
 
226 aa  74.7  0.0000000000009  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.366643  n/a   
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  25.79 
 
 
226 aa  74.3  0.000000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_011004  Rpal_4520  transcriptional regulator, Crp/Fnr family  23.79 
 
 
236 aa  73.6  0.000000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_4322  cyclic nucleotide-binding  27.91 
 
 
225 aa  73.9  0.000000000002  Salinispora tropica CNB-440  Bacteria  normal  normal  0.0230513 
 
 
-
 
NC_007777  Francci3_4286  Crp/FNR family transcriptional regulator  31.42 
 
 
241 aa  73.9  0.000000000002  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  26.47 
 
 
226 aa  73.9  0.000000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  30.11 
 
 
225 aa  73.9  0.000000000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_4762  Crp/FNR family transcriptional regulator  27.91 
 
 
225 aa  73.6  0.000000000002  Salinispora arenicola CNS-205  Bacteria  normal  0.900483  hitchhiker  0.0000929699 
 
 
-
 
NC_013525  Tter_0550  transcriptional regulator, Crp/Fnr family  25.12 
 
 
224 aa  73.9  0.000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009921  Franean1_0328  Crp/FNR family transcriptional regulator  31.36 
 
 
246 aa  73.9  0.000000000002  Frankia sp. EAN1pec  Bacteria  normal  0.0277272  normal  0.0570772 
 
 
-
 
NC_009253  Dred_3232  cyclic nucleotide-binding protein  22.96 
 
 
212 aa  72.8  0.000000000004  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_1169  Crp/FNR family transcriptional regulator  27.06 
 
 
227 aa  72.4  0.000000000005  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0303416  normal  0.0506186 
 
 
-
 
NC_011757  Mchl_3673  transcriptional regulator, Crp/Fnr family  26.32 
 
 
254 aa  72.4  0.000000000005  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.43296  normal 
 
 
-
 
NC_009439  Pmen_3943  cAMP-regulatory protein  25 
 
 
214 aa  72.4  0.000000000005  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0199  Crp/FNR family transcriptional regulator  28.37 
 
 
227 aa  72.4  0.000000000006  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_1951  Crp/FNR family transcriptional regulator  25.15 
 
 
222 aa  72.4  0.000000000006  Ruegeria sp. TM1040  Bacteria  normal  0.861655  normal  0.0267012 
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  24.24 
 
 
352 aa  72  0.000000000006  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_013440  Hoch_2081  transcriptional regulator, Crp/Fnr family  27.8 
 
 
229 aa  72  0.000000000007  Haliangium ochraceum DSM 14365  Bacteria  normal  0.264181  normal 
 
 
-
 
NC_007908  Rfer_3511  Crp/FNR family transcriptional regulator  27.32 
 
 
233 aa  72  0.000000000007  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  24.23 
 
 
231 aa  72  0.000000000007  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_012918  GM21_2448  transcriptional regulator, Crp/Fnr family  25.12 
 
 
238 aa  71.6  0.000000000009  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010172  Mext_3348  cyclic nucleotide-binding  25.88 
 
 
254 aa  71.2  0.00000000001  Methylobacterium extorquens PA1  Bacteria  normal  0.181039  normal 
 
 
-
 
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