More than 300 homologs were found in PanDaTox collection
for query gene Mpop_4187 on replicon NC_010725
Organism: Methylobacterium populi BJ001



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010725  Mpop_4187  transcriptional regulator, Crp/Fnr family  100 
 
 
254 aa  507  1e-143  Methylobacterium populi BJ001  Bacteria  normal  0.338954  normal 
 
 
-
 
NC_011757  Mchl_3673  transcriptional regulator, Crp/Fnr family  94.88 
 
 
254 aa  484  1e-136  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.43296  normal 
 
 
-
 
NC_010172  Mext_3348  cyclic nucleotide-binding  94.88 
 
 
254 aa  485  1e-136  Methylobacterium extorquens PA1  Bacteria  normal  0.181039  normal 
 
 
-
 
NC_009485  BBta_4881  putative cyclic-AMP receptor-like protein  61.04 
 
 
281 aa  289  3e-77  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.353478  normal  0.139273 
 
 
-
 
NC_007406  Nwi_0675  cyclic nucleotide-binding protein  59.83 
 
 
240 aa  278  9e-74  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.35129  normal  0.370797 
 
 
-
 
NC_010510  Mrad2831_6152  Crp/FNR family transcriptional regulator  48.89 
 
 
256 aa  218  5e-56  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1475  Crp/FNR family transcriptional regulator  47.76 
 
 
260 aa  211  7e-54  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.796858 
 
 
-
 
NC_011757  Mchl_4199  cyclic nucleotide-binding protein  47.27 
 
 
260 aa  208  7e-53  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_2083  CRP/FNR family transcriptional regulator  48.32 
 
 
258 aa  206  3e-52  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.193038 
 
 
-
 
NC_010510  Mrad2831_6158  cyclic nucleotide-binding protein  46.85 
 
 
251 aa  202  4e-51  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1486  Crp/FNR family transcriptional regulator  36.45 
 
 
240 aa  111  1.0000000000000001e-23  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_0860  Crp/FNR family transcriptional regulator  30.89 
 
 
234 aa  101  1e-20  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.693979  n/a   
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  26.5 
 
 
247 aa  100  2e-20  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  29.09 
 
 
228 aa  95.1  9e-19  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  26.42 
 
 
229 aa  94  2e-18  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  30.77 
 
 
225 aa  93.6  3e-18  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  28.04 
 
 
229 aa  92.8  4e-18  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  28.72 
 
 
225 aa  92.4  6e-18  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  24.64 
 
 
227 aa  92.4  7e-18  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_22000  transcriptional regulator, Crp/Fnr family  30.19 
 
 
235 aa  91.3  1e-17  Azotobacter vinelandii DJ  Bacteria  normal  0.457493  n/a   
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  28.17 
 
 
226 aa  90.9  2e-17  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  28.57 
 
 
225 aa  90.1  3e-17  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  29.02 
 
 
225 aa  89.7  4e-17  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  26.29 
 
 
225 aa  89.4  5e-17  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_2081  transcriptional regulator, Crp/Fnr family  26.77 
 
 
229 aa  89.4  5e-17  Haliangium ochraceum DSM 14365  Bacteria  normal  0.264181  normal 
 
 
-
 
NC_013093  Amir_0253  transcriptional regulator, Crp/Fnr family  28.3 
 
 
224 aa  88.6  8e-17  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_0783  CRP/FNR family transcriptional regulator  29.19 
 
 
217 aa  88.2  1e-16  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  26.19 
 
 
241 aa  87.8  2e-16  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1955  transcriptional regulator, Crp/Fnr family  30.77 
 
 
229 aa  87  2e-16  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_13707  Cpr/FNR family transcriptional regulator  28.17 
 
 
224 aa  87.4  2e-16  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0333343 
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  25.79 
 
 
239 aa  87.4  2e-16  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_014158  Tpau_3932  transcriptional regulator, Crp/Fnr family  28.17 
 
 
224 aa  87  3e-16  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.571672  n/a   
 
 
-
 
NC_011830  Dhaf_3158  transcriptional regulator, Crp/Fnr family  25.94 
 
 
223 aa  87  3e-16  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_5205  Crp/FNR family transcriptional regulator  27.7 
 
 
224 aa  87  3e-16  Mycobacterium sp. JLS  Bacteria  normal  0.703662  hitchhiker  0.000819508 
 
 
-
 
NC_008146  Mmcs_4818  Crp/FNR family transcriptional regulator  27.7 
 
 
224 aa  87  3e-16  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4904  Crp/FNR family transcriptional regulator  27.7 
 
 
224 aa  87  3e-16  Mycobacterium sp. KMS  Bacteria  normal  normal  0.385516 
 
 
-
 
NC_008726  Mvan_5435  CRP/FNR family transcriptional regulator  27.7 
 
 
224 aa  86.7  3e-16  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.397858 
 
 
-
 
NC_011830  Dhaf_1859  transcriptional regulator, Crp/Fnr family  27.72 
 
 
220 aa  86.3  4e-16  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_0303  transcriptional regulator, Crp/Fnr family  28.29 
 
 
228 aa  86.3  4e-16  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  26.64 
 
 
224 aa  86.3  5e-16  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  27.72 
 
 
226 aa  85.9  6e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  29.33 
 
 
226 aa  85.5  8e-16  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  30.77 
 
 
251 aa  84.3  0.000000000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_013235  Namu_0718  transcriptional regulator, Crp/Fnr family  29.58 
 
 
224 aa  85.1  0.000000000000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_1371  CRP/FNR family transcriptional regulator  27.7 
 
 
224 aa  85.1  0.000000000000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0955358 
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  24.53 
 
 
227 aa  84.7  0.000000000000001  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  25.58 
 
 
227 aa  84.3  0.000000000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_0505  cyclic nucleotide-binding protein  27.23 
 
 
224 aa  84  0.000000000000002  Gordonia bronchialis DSM 43247  Bacteria  normal  0.287437  n/a   
 
 
-
 
NC_009253  Dred_1262  CRP/FNR family transcriptional regulator  27.57 
 
 
222 aa  84  0.000000000000002  Desulfotomaculum reducens MI-1  Bacteria  normal  0.247212  n/a   
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  24.53 
 
 
227 aa  84.3  0.000000000000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  26.63 
 
 
248 aa  83.6  0.000000000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  23.71 
 
 
225 aa  83.6  0.000000000000003  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_4099  Crp/FNR family transcriptional regulator  29.05 
 
 
237 aa  83.2  0.000000000000004  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00000000655046 
 
 
-
 
NC_009972  Haur_2884  Crp/FNR family transcriptional regulator  29.9 
 
 
218 aa  83.2  0.000000000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.161359  n/a   
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  30.41 
 
 
226 aa  83.2  0.000000000000004  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_013216  Dtox_2928  transcriptional regulator, Crp/Fnr family  26.46 
 
 
232 aa  82.8  0.000000000000005  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.39759 
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  27.51 
 
 
231 aa  82.8  0.000000000000005  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  23.36 
 
 
243 aa  82.8  0.000000000000005  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  24.04 
 
 
225 aa  82.4  0.000000000000006  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_010424  Daud_1482  CRP/FNR family transcriptional regulator  28.04 
 
 
235 aa  82.4  0.000000000000006  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000000238682  n/a   
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  23.71 
 
 
236 aa  82.4  0.000000000000006  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_013216  Dtox_1944  transcriptional regulator, Crp/Fnr family  30.92 
 
 
227 aa  82  0.000000000000008  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  26.53 
 
 
236 aa  81.6  0.00000000000001  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  27.11 
 
 
228 aa  81.3  0.00000000000001  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  23.22 
 
 
230 aa  81.6  0.00000000000001  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_008699  Noca_1641  cyclic nucleotide-binding  30.46 
 
 
267 aa  81.3  0.00000000000001  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  21.86 
 
 
227 aa  80.5  0.00000000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_010815  Glov_3725  transcriptional regulator, Crp/Fnr family  27.14 
 
 
237 aa  81.3  0.00000000000002  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.0054318  normal  0.342144 
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  23.2 
 
 
236 aa  80.5  0.00000000000002  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  23.15 
 
 
227 aa  80.9  0.00000000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_013159  Svir_36130  cAMP-binding protein  25.94 
 
 
224 aa  80.1  0.00000000000003  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.758224 
 
 
-
 
NC_010816  BLD_0979  cAMP-binding protein  26.32 
 
 
239 aa  80.1  0.00000000000003  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_1234  Crp/FNR family transcriptional regulator  29.69 
 
 
232 aa  80.5  0.00000000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0292  CRP/FNR family transcriptional regulator  28.3 
 
 
224 aa  80.5  0.00000000000003  Roseiflexus sp. RS-1  Bacteria  normal  0.210312  normal  0.0189188 
 
 
-
 
NC_013132  Cpin_0678  transcriptional regulator, Crp/Fnr family  23.04 
 
 
236 aa  80.5  0.00000000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236133  normal 
 
 
-
 
NC_011992  Dtpsy_0976  transcriptional regulator, Crp/Fnr family  30.24 
 
 
258 aa  79.7  0.00000000000004  Acidovorax ebreus TPSY  Bacteria  normal  0.859751  n/a   
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  24.06 
 
 
228 aa  79.7  0.00000000000004  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_010814  Glov_0629  transcriptional regulator, Crp/Fnr family  28.64 
 
 
230 aa  79.7  0.00000000000004  Geobacter lovleyi SZ  Bacteria  decreased coverage  0.0000285446  n/a   
 
 
-
 
NC_008782  Ajs_1058  CRP/FNR family transcriptional regulator  30.24 
 
 
258 aa  79.7  0.00000000000004  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  27.1 
 
 
228 aa  79.3  0.00000000000006  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  23.88 
 
 
225 aa  78.6  0.00000000000009  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_0880  transcriptional regulator, Crp/Fnr family  26.75 
 
 
219 aa  78.2  0.0000000000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.812688  n/a   
 
 
-
 
NC_014151  Cfla_0719  transcriptional regulator, Crp/Fnr family  27.27 
 
 
257 aa  78.2  0.0000000000001  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000204419 
 
 
-
 
NC_009767  Rcas_0252  Crp/FNR family transcriptional regulator  27.89 
 
 
218 aa  77.8  0.0000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  unclonable  0.00000185636  normal  0.131428 
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  26.18 
 
 
249 aa  78.2  0.0000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_013721  HMPREF0424_0303  cyclic nucleotide-binding domain protein  27.98 
 
 
236 aa  77.4  0.0000000000002  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.232206 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  27.36 
 
 
228 aa  77.4  0.0000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_8981  putative transcriptional regulator, Crp/Fnr family  29.74 
 
 
222 aa  77.4  0.0000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_0602  transcriptional regulator, Crp/Fnr family  26.63 
 
 
225 aa  77.4  0.0000000000002  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.628877 
 
 
-
 
NC_009921  Franean1_1101  Crp/FNR family transcriptional regulator  29.85 
 
 
246 aa  77.4  0.0000000000002  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  24.73 
 
 
231 aa  76.6  0.0000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_007777  Francci3_3629  Crp/FNR family transcriptional regulator  30.48 
 
 
263 aa  76.6  0.0000000000003  Frankia sp. CcI3  Bacteria  normal  normal  0.332638 
 
 
-
 
NC_007794  Saro_2016  Crp/FNR family transcriptional regulator  25.76 
 
 
229 aa  77  0.0000000000003  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0776172  n/a   
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  22.81 
 
 
352 aa  77  0.0000000000003  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_008148  Rxyl_1332  Crp/FNR family transcriptional regulator  34.85 
 
 
238 aa  76.6  0.0000000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.407818  n/a   
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  23.56 
 
 
229 aa  76.3  0.0000000000004  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  23.23 
 
 
226 aa  76.6  0.0000000000004  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_4596  transcriptional regulator, Crp/Fnr family  28.75 
 
 
230 aa  76.3  0.0000000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  24.08 
 
 
226 aa  76.6  0.0000000000004  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  27.01 
 
 
234 aa  75.9  0.0000000000005  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
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