More than 300 homologs were found in PanDaTox collection
for query gene Rxyl_1234 on replicon NC_008148
Organism: Rubrobacter xylanophilus DSM 9941



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008148  Rxyl_1234  Crp/FNR family transcriptional regulator  100 
 
 
232 aa  468  1.0000000000000001e-131  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0860  Crp/FNR family transcriptional regulator  43.48 
 
 
234 aa  157  2e-37  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.693979  n/a   
 
 
-
 
NC_013216  Dtox_1944  transcriptional regulator, Crp/Fnr family  30.84 
 
 
227 aa  107  2e-22  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_0127  Crp/FNR family transcriptional regulator  33.51 
 
 
222 aa  103  3e-21  Synechococcus elongatus PCC 7942  Bacteria  normal  0.867755  normal  0.325855 
 
 
-
 
NC_008312  Tery_2023  Crp/FNR family transcriptional regulator  33.16 
 
 
221 aa  102  7e-21  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0496812 
 
 
-
 
NC_011729  PCC7424_0372  transcriptional regulator, Crp/Fnr family  30 
 
 
225 aa  101  8e-21  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008025  Dgeo_0106  Crp/FNR family transcriptional regulator  32.6 
 
 
254 aa  101  1e-20  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_0755  transcriptional regulator, Crp/Fnr family  31.38 
 
 
223 aa  100  1e-20  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.125698 
 
 
-
 
NC_011726  PCC8801_2058  transcriptional regulator, Crp/Fnr family  28.83 
 
 
225 aa  100  3e-20  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_2082  transcriptional regulator, Crp/Fnr family  28.83 
 
 
225 aa  100  3e-20  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_007513  Syncc9902_2075  Crp/FNR family transcriptional regulator  33.33 
 
 
210 aa  99.8  4e-20  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_008820  P9303_24561  CRP family global nitrogen regulatory protein  32.45 
 
 
222 aa  99  5e-20  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_007335  PMN2A_1612  Crp/FNR family transcriptional regulator  30.84 
 
 
243 aa  98.6  7e-20  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_1065  Crp/Fnr family transcriptional regulator  31.55 
 
 
223 aa  98.6  7e-20  'Nostoc azollae' 0708  Bacteria  normal  0.547512  n/a   
 
 
-
 
NC_008819  NATL1_03241  CRP family global nitrogen regulatory protein  30.84 
 
 
243 aa  98.6  8e-20  Prochlorococcus marinus str. NATL1A  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  29.49 
 
 
227 aa  98.2  1e-19  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3283  Crp/FNR family transcriptional regulator  31.55 
 
 
223 aa  97.8  1e-19  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  33.33 
 
 
224 aa  97.1  2e-19  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007516  Syncc9605_0269  Crp/FNR family transcriptional regulator  31.78 
 
 
238 aa  96.7  3e-19  Synechococcus sp. CC9605  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  34.83 
 
 
225 aa  96.3  4e-19  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  30.85 
 
 
226 aa  95.9  4e-19  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  26.04 
 
 
226 aa  95.5  6e-19  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1641  cyclic nucleotide-binding  32.62 
 
 
267 aa  95.5  6e-19  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008817  P9515_02791  CRP family global nitrogen regulatory protein  31.19 
 
 
244 aa  95.1  9e-19  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  0.696842  n/a   
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  29.44 
 
 
239 aa  94.7  1e-18  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  32.09 
 
 
228 aa  94.4  1e-18  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008816  A9601_02681  CRP family global nitrogen regulatory protein  31.84 
 
 
244 aa  94.4  1e-18  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.548193  n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  31.55 
 
 
225 aa  94.7  1e-18  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_009091  P9301_02691  CRP family global nitrogen regulatory protein  30.19 
 
 
244 aa  93.6  2e-18  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  32.24 
 
 
225 aa  93.6  2e-18  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  31.55 
 
 
225 aa  94  2e-18  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2074  transcriptional regulator, Crp/Fnr family  31 
 
 
225 aa  93.2  3e-18  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.971908 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  28.72 
 
 
225 aa  92.8  4e-18  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_007577  PMT9312_0248  Crp/FNR family transcriptional regulator  32.12 
 
 
244 aa  92.8  4e-18  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1660  Crp/FNR family transcriptional regulator  32.45 
 
 
261 aa  92  7e-18  Nocardioides sp. JS614  Bacteria  normal  0.74426  n/a   
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  32.72 
 
 
226 aa  91.3  1e-17  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_013235  Namu_0718  transcriptional regulator, Crp/Fnr family  32.46 
 
 
224 aa  90.1  2e-17  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  31.69 
 
 
242 aa  90.1  2e-17  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_010424  Daud_1482  CRP/FNR family transcriptional regulator  28.8 
 
 
235 aa  89.4  4e-17  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000000238682  n/a   
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  29.17 
 
 
231 aa  89  5e-17  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  28.12 
 
 
219 aa  89.4  5e-17  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  29.57 
 
 
225 aa  89  7e-17  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_008025  Dgeo_1275  Crp/FNR family transcriptional regulator  32.46 
 
 
230 aa  88.6  7e-17  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.651323 
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  31.02 
 
 
231 aa  88.2  9e-17  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  31.72 
 
 
224 aa  88.2  9e-17  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  31.31 
 
 
240 aa  87  2e-16  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  32.24 
 
 
225 aa  87.4  2e-16  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_2081  transcriptional regulator, Crp/Fnr family  29.57 
 
 
229 aa  86.7  3e-16  Haliangium ochraceum DSM 14365  Bacteria  normal  0.264181  normal 
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  27.66 
 
 
243 aa  86.3  4e-16  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_013216  Dtox_2750  transcriptional regulator, Crp/Fnr family  32.29 
 
 
222 aa  85.9  5e-16  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.0000000354449  normal  0.602467 
 
 
-
 
NC_013946  Mrub_2129  Crp/Fnr family transcriptional regulator  28.5 
 
 
225 aa  84.7  0.000000000000001  Meiothermus ruber DSM 1279  Bacteria  normal  0.185639  normal  0.344505 
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  27.23 
 
 
236 aa  84.7  0.000000000000001  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_009253  Dred_3232  cyclic nucleotide-binding protein  32.43 
 
 
212 aa  84  0.000000000000002  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_1061  Crp family transcriptional regulator  31.66 
 
 
214 aa  84  0.000000000000002  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0336611  n/a   
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  27.23 
 
 
236 aa  84.3  0.000000000000002  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_013385  Adeg_1955  transcriptional regulator, Crp/Fnr family  32.42 
 
 
229 aa  83.2  0.000000000000003  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  31.15 
 
 
228 aa  83.2  0.000000000000003  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_3398  CRP/FNR family transcriptional regulator  27.89 
 
 
230 aa  83.6  0.000000000000003  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_0505  cyclic nucleotide-binding protein  30 
 
 
224 aa  83.6  0.000000000000003  Gordonia bronchialis DSM 43247  Bacteria  normal  0.287437  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1975  Crp/FNR family transcriptional regulator  28.19 
 
 
230 aa  83.6  0.000000000000003  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_3932  transcriptional regulator, Crp/Fnr family  30 
 
 
224 aa  83.2  0.000000000000003  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.571672  n/a   
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  28.05 
 
 
241 aa  82.8  0.000000000000004  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS1984  Crp/FNR family transcriptional regulator  27.51 
 
 
230 aa  82.8  0.000000000000004  Bacillus anthracis str. Sterne  Bacteria  normal  0.513682  n/a   
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  30.27 
 
 
226 aa  82.8  0.000000000000004  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_011898  Ccel_1678  transcriptional regulator, Crp/Fnr family  24.77 
 
 
234 aa  82.8  0.000000000000004  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  30.29 
 
 
249 aa  82.8  0.000000000000004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_011772  BCG9842_B3176  transcriptional regulator, Crp/Fnr family  27.51 
 
 
230 aa  82.8  0.000000000000004  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  29.28 
 
 
225 aa  82.8  0.000000000000004  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_5435  CRP/FNR family transcriptional regulator  30.53 
 
 
224 aa  82.8  0.000000000000004  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.397858 
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  32.58 
 
 
226 aa  82.4  0.000000000000005  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_011658  BCAH187_A2279  transcriptional regulator, Crp/Fnr family  27.51 
 
 
230 aa  82.4  0.000000000000005  Bacillus cereus AH187  Bacteria  normal  0.216294  n/a   
 
 
-
 
NC_007530  GBAA_2132  Crp/FNR family transcriptional regulator  27.51 
 
 
226 aa  82.8  0.000000000000005  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  28.88 
 
 
229 aa  82.4  0.000000000000005  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
NC_011725  BCB4264_A2139  transcriptional regulator, Crp/Fnr family  27.51 
 
 
230 aa  82.4  0.000000000000006  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  27.59 
 
 
226 aa  82  0.000000000000008  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_009565  TBFG_13707  Cpr/FNR family transcriptional regulator  30 
 
 
224 aa  82  0.000000000000008  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0333343 
 
 
-
 
NC_005957  BT9727_1958  Crp/FNR family transcriptional regulator  27.51 
 
 
230 aa  81.6  0.000000000000009  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0304498  n/a   
 
 
-
 
NC_006274  BCZK1936  Crp/FNR family transcriptional regulator  27.51 
 
 
230 aa  81.6  0.000000000000009  Bacillus cereus E33L  Bacteria  normal  0.308171  n/a   
 
 
-
 
NC_011773  BCAH820_2165  transcriptional regulator, Crp/Fnr family  27.51 
 
 
230 aa  81.6  0.000000000000009  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_009077  Mjls_5205  Crp/FNR family transcriptional regulator  30 
 
 
224 aa  81.6  0.00000000000001  Mycobacterium sp. JLS  Bacteria  normal  0.703662  hitchhiker  0.000819508 
 
 
-
 
NC_013132  Cpin_0678  transcriptional regulator, Crp/Fnr family  28.49 
 
 
236 aa  81.6  0.00000000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236133  normal 
 
 
-
 
NC_009338  Mflv_1371  CRP/FNR family transcriptional regulator  30.53 
 
 
224 aa  81.3  0.00000000000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0955358 
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  32.78 
 
 
220 aa  81.3  0.00000000000001  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_008146  Mmcs_4818  Crp/FNR family transcriptional regulator  30 
 
 
224 aa  81.6  0.00000000000001  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4904  Crp/FNR family transcriptional regulator  30 
 
 
224 aa  81.6  0.00000000000001  Mycobacterium sp. KMS  Bacteria  normal  normal  0.385516 
 
 
-
 
NC_011757  Mchl_3673  transcriptional regulator, Crp/Fnr family  29.69 
 
 
254 aa  80.5  0.00000000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.43296  normal 
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  27.46 
 
 
225 aa  80.5  0.00000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_4187  transcriptional regulator, Crp/Fnr family  29.69 
 
 
254 aa  80.5  0.00000000000002  Methylobacterium populi BJ001  Bacteria  normal  0.338954  normal 
 
 
-
 
NC_012560  Avin_22000  transcriptional regulator, Crp/Fnr family  32.97 
 
 
235 aa  79.7  0.00000000000003  Azotobacter vinelandii DJ  Bacteria  normal  0.457493  n/a   
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  28.65 
 
 
226 aa  79.7  0.00000000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_010172  Mext_3348  cyclic nucleotide-binding  29.69 
 
 
254 aa  79.7  0.00000000000003  Methylobacterium extorquens PA1  Bacteria  normal  0.181039  normal 
 
 
-
 
NC_013093  Amir_0253  transcriptional regulator, Crp/Fnr family  28.3 
 
 
224 aa  80.1  0.00000000000003  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  27.15 
 
 
227 aa  80.1  0.00000000000003  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  31.48 
 
 
228 aa  80.1  0.00000000000003  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_009976  P9211_02711  global nitrogen regulatory protein  31.53 
 
 
244 aa  79.3  0.00000000000004  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  normal 
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  30.6 
 
 
228 aa  79.3  0.00000000000004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  30.56 
 
 
225 aa  79  0.00000000000005  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_013159  Svir_36130  cAMP-binding protein  27.49 
 
 
224 aa  79.3  0.00000000000005  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.758224 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  31 
 
 
226 aa  79.3  0.00000000000005  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  25 
 
 
236 aa  79  0.00000000000006  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
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