Gene Pmen_3943 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3943 
Symbol 
ID5110166 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4328933 
End bp4329577 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content60% 
IMG OID640505206 
ProductcAMP-regulatory protein 
Protein accessionYP_001189422 
Protein GI146308957 
COG category[T] Signal transduction mechanisms 
COG ID[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones54 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTGCTA TTACCCTCAC ACCTAAAATC AAGAACCTCG ACAAGCTTCT CGCACACTGT 
CATCGCCGTC GCTACACCGC CAAAAGCACC ATCATCTACG CAGGTGATCG TTGCGAAACG
CTGTTCTTCA TCGTCAAGGG CTCGGTCACC ATCCTGATCG AGGATGACGA TGGCCGCGAG
ATGATCATCG CCTACCTCAA CTCTGGCGAC TTCTTCGGTG AGATGGGCCT GTTCGAGAAG
GATGGCGCGG AGAAGGAGCG CAGCGCCTGG GTACGCGCCA AGACCGAATG CGAAGTGGCG
GAAATCAGCT ACGCCAAATT CCGCGAACTG ACCCAGCAGG ACCCCGACAT CCTCTTCGCC
CTCGGCAGCC AGATGGCAGA GCGCCTGCGC AACACCACGC GCAAGGTCGG CGATCTGGCC
TTCCTCGATG TCACCGGCCG CGTCGCCCGC ACCCTGCTCG ATCTGTGCAA GCAGCCGGAC
GCCATGACCC ACCCGGACGG CATGCAGATC AAGATCACCC GCCAGGAAAT CGGCCGCATC
GTCGGCTGCT CGCGGGAGAT GGTCGGTCGC GTACTCAAGT CCCTGGAAGA ACAGGGCCTG
GTACACGTGA AAGGCAAGAC CATGGTGGTC TTCGGCACGC GCTGA
 
Protein sequence
MVAITLTPKI KNLDKLLAHC HRRRYTAKST IIYAGDRCET LFFIVKGSVT ILIEDDDGRE 
MIIAYLNSGD FFGEMGLFEK DGAEKERSAW VRAKTECEVA EISYAKFREL TQQDPDILFA
LGSQMAERLR NTTRKVGDLA FLDVTGRVAR TLLDLCKQPD AMTHPDGMQI KITRQEIGRI
VGCSREMVGR VLKSLEEQGL VHVKGKTMVV FGTR