293 homologs were found in PanDaTox collection
for query gene Dhaf_3790 on replicon NC_011830
Organism: Desulfitobacterium hafniense DCB-2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011830  Dhaf_3790  transcriptional regulator, Crp/Fnr family  100 
 
 
226 aa  457  9.999999999999999e-129  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.000000171716  n/a   
 
 
-
 
NC_011146  Gbem_0066  transcriptional regulator, Crp/Fnr family  49.08 
 
 
220 aa  218  7.999999999999999e-56  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3027  Crp/FNR family transcriptional regulator  39.91 
 
 
216 aa  177  2e-43  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0932  transcriptional regulator, Crp/Fnr family  36.73 
 
 
226 aa  152  2.9999999999999998e-36  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.366643  n/a   
 
 
-
 
NC_011883  Ddes_0383  putative transcriptional regulator, Crp/Fnr family  36.73 
 
 
225 aa  149  3e-35  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.164826  n/a   
 
 
-
 
NC_013223  Dret_1233  transcriptional regulator, Crp/Fnr family  36.79 
 
 
225 aa  149  3e-35  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0234193  normal  0.501568 
 
 
-
 
NC_011769  DvMF_2234  transcriptional regulator, Crp/Fnr family  43.33 
 
 
280 aa  140  1.9999999999999998e-32  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007298  Daro_1089  Crp/FNR family transcriptional regulator  33.83 
 
 
218 aa  139  3e-32  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.3876 
 
 
-
 
NC_012560  Avin_47010  Carbon monoxide oxidation transcription regulator, Crp/Fnr family: CooA  37.38 
 
 
220 aa  138  8.999999999999999e-32  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_1134  CRP/FNR family transcriptional regulator  35.75 
 
 
223 aa  137  1e-31  Desulfovibrio vulgaris DP4  Bacteria  normal  0.972162  normal  0.0613651 
 
 
-
 
NC_007925  RPC_3189  Crp/FNR family transcriptional regulator  31.92 
 
 
219 aa  121  9e-27  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.84617 
 
 
-
 
NC_007925  RPC_4494  Crp/FNR family transcriptional regulator  30.23 
 
 
232 aa  113  2.0000000000000002e-24  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.164578 
 
 
-
 
NC_010581  Bind_2046  Crp/FNR family transcriptional regulator  33.85 
 
 
219 aa  112  7.000000000000001e-24  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_0800  transcriptional regulator, Crp/Fnr family  30 
 
 
224 aa  108  8.000000000000001e-23  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0302672 
 
 
-
 
NC_011365  Gdia_2894  putative transcriptional regulator, Crp/Fnr family  31.63 
 
 
224 aa  108  9.000000000000001e-23  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.0602886  normal  0.0128159 
 
 
-
 
NC_007643  Rru_A1431  Crp/FNR family transcriptional regulator  29.17 
 
 
222 aa  105  5e-22  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  31.98 
 
 
225 aa  97.1  2e-19  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009429  Rsph17025_3237  hypothetical protein  28.95 
 
 
261 aa  95.1  8e-19  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  34.01 
 
 
231 aa  87.8  1e-16  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  27.68 
 
 
225 aa  85.9  5e-16  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  23.18 
 
 
227 aa  78.2  0.00000000000009  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  25.12 
 
 
236 aa  78.2  0.00000000000009  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  27.23 
 
 
229 aa  77.8  0.0000000000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_009253  Dred_1262  CRP/FNR family transcriptional regulator  26.02 
 
 
222 aa  78.2  0.0000000000001  Desulfotomaculum reducens MI-1  Bacteria  normal  0.247212  n/a   
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  25.12 
 
 
236 aa  77.8  0.0000000000001  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  29.17 
 
 
226 aa  77.8  0.0000000000001  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_0880  transcriptional regulator, Crp/Fnr family  26.01 
 
 
219 aa  77  0.0000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.812688  n/a   
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  27.1 
 
 
219 aa  77.4  0.0000000000002  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_013385  Adeg_1955  transcriptional regulator, Crp/Fnr family  28.88 
 
 
229 aa  77  0.0000000000002  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_2081  transcriptional regulator, Crp/Fnr family  25.34 
 
 
229 aa  76.3  0.0000000000004  Haliangium ochraceum DSM 14365  Bacteria  normal  0.264181  normal 
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  23.08 
 
 
226 aa  74.7  0.000000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_011830  Dhaf_3158  transcriptional regulator, Crp/Fnr family  27.92 
 
 
223 aa  73.9  0.000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_0303  cyclic nucleotide-binding domain protein  25.46 
 
 
236 aa  73.2  0.000000000003  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.232206 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  24.77 
 
 
225 aa  71.2  0.00000000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_008148  Rxyl_0860  Crp/FNR family transcriptional regulator  26.06 
 
 
234 aa  69.7  0.00000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.693979  n/a   
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  23.64 
 
 
229 aa  69.3  0.00000000004  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
NC_011831  Cagg_0349  transcriptional regulator, Crp/Fnr family  25.98 
 
 
222 aa  68.9  0.00000000006  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.00000192919 
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  23.3 
 
 
236 aa  68.6  0.00000000008  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  24.31 
 
 
224 aa  68.6  0.00000000008  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_22000  transcriptional regulator, Crp/Fnr family  22.02 
 
 
235 aa  68.2  0.0000000001  Azotobacter vinelandii DJ  Bacteria  normal  0.457493  n/a   
 
 
-
 
NC_010816  BLD_0979  cAMP-binding protein  23.61 
 
 
239 aa  67.8  0.0000000001  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  23.76 
 
 
226 aa  67.4  0.0000000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1641  cyclic nucleotide-binding  25.62 
 
 
267 aa  66.6  0.0000000003  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  23.7 
 
 
226 aa  66.6  0.0000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  24.86 
 
 
242 aa  65.9  0.0000000005  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  23 
 
 
247 aa  65.5  0.0000000006  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1482  CRP/FNR family transcriptional regulator  26.4 
 
 
235 aa  65.5  0.0000000007  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000000238682  n/a   
 
 
-
 
NC_011666  Msil_1523  transcriptional regulator, Crp/Fnr family  25.88 
 
 
231 aa  65.1  0.0000000008  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  24.31 
 
 
225 aa  65.1  0.0000000009  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  23.58 
 
 
226 aa  65.1  0.0000000009  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_010814  Glov_0629  transcriptional regulator, Crp/Fnr family  22.69 
 
 
230 aa  64.3  0.000000001  Geobacter lovleyi SZ  Bacteria  decreased coverage  0.0000285446  n/a   
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  23.85 
 
 
228 aa  64.7  0.000000001  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_2928  transcriptional regulator, Crp/Fnr family  27.22 
 
 
232 aa  64.3  0.000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.39759 
 
 
-
 
NC_007964  Nham_2812  Crp/FNR family transcriptional regulator  22.51 
 
 
243 aa  63.5  0.000000002  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  22.73 
 
 
251 aa  63.9  0.000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  22.77 
 
 
225 aa  64.3  0.000000002  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  23.85 
 
 
236 aa  63.5  0.000000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1465  Crp/FNR family transcriptional regulator  22.29 
 
 
236 aa  63.5  0.000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.342125  normal  0.439299 
 
 
-
 
NC_011898  Ccel_1678  transcriptional regulator, Crp/Fnr family  23.67 
 
 
234 aa  63.2  0.000000003  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  25.86 
 
 
220 aa  63.5  0.000000003  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_009483  Gura_2323  CRP/FNR family transcriptional regulator  27.32 
 
 
233 aa  62.8  0.000000004  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00053006  n/a   
 
 
-
 
NC_007413  Ava_3283  Crp/FNR family transcriptional regulator  25.27 
 
 
223 aa  62.8  0.000000004  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  30.1 
 
 
227 aa  62.8  0.000000004  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  24.16 
 
 
231 aa  63.2  0.000000004  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  26.74 
 
 
225 aa  62.8  0.000000004  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1944  transcriptional regulator, Crp/Fnr family  26.39 
 
 
227 aa  62.4  0.000000005  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  20.75 
 
 
240 aa  62.4  0.000000005  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  26.74 
 
 
225 aa  62.8  0.000000005  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  21.86 
 
 
236 aa  62.4  0.000000005  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_014212  Mesil_2074  transcriptional regulator, Crp/Fnr family  28.41 
 
 
225 aa  62.4  0.000000006  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.971908 
 
 
-
 
NC_010320  Teth514_1376  CRP/FNR family transcriptional regulator  25.12 
 
 
228 aa  62.4  0.000000006  Thermoanaerobacter sp. X514  Bacteria  normal  0.271211  n/a   
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  24.32 
 
 
234 aa  62.4  0.000000006  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  24.2 
 
 
229 aa  62.4  0.000000006  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_1065  Crp/Fnr family transcriptional regulator  25.82 
 
 
223 aa  62  0.000000007  'Nostoc azollae' 0708  Bacteria  normal  0.547512  n/a   
 
 
-
 
NC_007406  Nwi_2417  cyclic nucleotide-binding protein  23 
 
 
250 aa  62  0.000000008  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.034588  normal  0.0382931 
 
 
-
 
NC_008148  Rxyl_1332  Crp/FNR family transcriptional regulator  23.21 
 
 
238 aa  62  0.000000008  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.407818  n/a   
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  24.11 
 
 
228 aa  61.6  0.000000009  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  22.22 
 
 
231 aa  61.2  0.00000001  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2104  transcriptional regulator, Crp/Fnr family  25.13 
 
 
229 aa  60.8  0.00000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  22.22 
 
 
231 aa  61.2  0.00000001  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_0783  CRP/FNR family transcriptional regulator  26.29 
 
 
217 aa  61.2  0.00000001  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  23 
 
 
228 aa  61.2  0.00000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  21.4 
 
 
236 aa  61.6  0.00000001  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  27.19 
 
 
227 aa  60.5  0.00000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_009428  Rsph17025_0968  CRP/FNR family transcriptional regulator  22.97 
 
 
233 aa  60.5  0.00000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_0884  Crp/Fnr family transcriptional regulator  26.5 
 
 
214 aa  60.5  0.00000002  Meiothermus ruber DSM 1279  Bacteria  normal  0.163926  normal 
 
 
-
 
NC_009511  Swit_3029  CRP/FNR family transcriptional regulator  24.2 
 
 
228 aa  60.5  0.00000002  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  23.36 
 
 
228 aa  60.8  0.00000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  24.07 
 
 
225 aa  60.1  0.00000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  23.56 
 
 
226 aa  60.1  0.00000003  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_009253  Dred_3232  cyclic nucleotide-binding protein  24.86 
 
 
212 aa  60.1  0.00000003  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  25.14 
 
 
225 aa  59.3  0.00000004  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_008025  Dgeo_0106  Crp/FNR family transcriptional regulator  24.12 
 
 
254 aa  59.3  0.00000004  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_2076  Crp/FNR family transcriptional regulator  22.73 
 
 
234 aa  59.7  0.00000004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.398696  n/a   
 
 
-
 
NC_008262  CPR_1062  Crp/FNR family transcriptional regulator  25.23 
 
 
236 aa  59.7  0.00000004  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_2082  transcriptional regulator, Crp/Fnr family  24.73 
 
 
225 aa  59.3  0.00000005  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2058  transcriptional regulator, Crp/Fnr family  24.73 
 
 
225 aa  59.3  0.00000005  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007777  Francci3_3629  Crp/FNR family transcriptional regulator  25.64 
 
 
263 aa  58.9  0.00000007  Frankia sp. CcI3  Bacteria  normal  normal  0.332638 
 
 
-
 
NC_009485  BBta_6822  Crp/FNR family transcriptional regulator  22.92 
 
 
239 aa  58.5  0.00000008  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  21.46 
 
 
226 aa  58.5  0.00000008  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
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