278 homologs were found in PanDaTox collection
for query gene Bind_2046 on replicon NC_010581
Organism: Beijerinckia indica subsp. indica ATCC 9039



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010581  Bind_2046  Crp/FNR family transcriptional regulator  100 
 
 
219 aa  442  1e-123  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3189  Crp/FNR family transcriptional regulator  61.24 
 
 
219 aa  254  7e-67  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.84617 
 
 
-
 
NC_011666  Msil_0800  transcriptional regulator, Crp/Fnr family  58.17 
 
 
224 aa  236  2e-61  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0302672 
 
 
-
 
NC_011365  Gdia_2894  putative transcriptional regulator, Crp/Fnr family  48.13 
 
 
224 aa  190  2e-47  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.0602886  normal  0.0128159 
 
 
-
 
NC_012560  Avin_47010  Carbon monoxide oxidation transcription regulator, Crp/Fnr family: CooA  40.49 
 
 
220 aa  141  9e-33  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1431  Crp/FNR family transcriptional regulator  35.53 
 
 
222 aa  134  9.999999999999999e-31  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0932  transcriptional regulator, Crp/Fnr family  35.71 
 
 
226 aa  130  1.0000000000000001e-29  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.366643  n/a   
 
 
-
 
NC_007298  Daro_1089  Crp/FNR family transcriptional regulator  38.1 
 
 
218 aa  130  2.0000000000000002e-29  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.3876 
 
 
-
 
NC_007925  RPC_4494  Crp/FNR family transcriptional regulator  33.5 
 
 
232 aa  129  3e-29  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.164578 
 
 
-
 
NC_008751  Dvul_1134  CRP/FNR family transcriptional regulator  38.04 
 
 
223 aa  129  4.0000000000000003e-29  Desulfovibrio vulgaris DP4  Bacteria  normal  0.972162  normal  0.0613651 
 
 
-
 
NC_007519  Dde_3027  Crp/FNR family transcriptional regulator  32.78 
 
 
216 aa  114  7.999999999999999e-25  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1233  transcriptional regulator, Crp/Fnr family  33.51 
 
 
225 aa  112  5e-24  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0234193  normal  0.501568 
 
 
-
 
NC_011830  Dhaf_3790  transcriptional regulator, Crp/Fnr family  33.85 
 
 
226 aa  112  6e-24  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.000000171716  n/a   
 
 
-
 
NC_011146  Gbem_0066  transcriptional regulator, Crp/Fnr family  37.27 
 
 
220 aa  106  2e-22  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0383  putative transcriptional regulator, Crp/Fnr family  34.42 
 
 
225 aa  104  1e-21  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.164826  n/a   
 
 
-
 
NC_009429  Rsph17025_3237  hypothetical protein  36.02 
 
 
261 aa  102  6e-21  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_2234  transcriptional regulator, Crp/Fnr family  38.78 
 
 
280 aa  95.9  4e-19  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  29.9 
 
 
231 aa  74.7  0.000000000001  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_007778  RPB_1465  Crp/FNR family transcriptional regulator  29.49 
 
 
236 aa  74.3  0.000000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.342125  normal  0.439299 
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  30.88 
 
 
225 aa  73.6  0.000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  27.32 
 
 
225 aa  72  0.000000000007  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  28.3 
 
 
236 aa  71.6  0.000000000008  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1592  transcriptional regulator, Crp/Fnr family  28.57 
 
 
228 aa  71.6  0.000000000009  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  34.48 
 
 
222 aa  70.9  0.00000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_2928  transcriptional regulator, Crp/Fnr family  25.26 
 
 
232 aa  69.3  0.00000000004  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.39759 
 
 
-
 
NC_013385  Adeg_1955  transcriptional regulator, Crp/Fnr family  30.16 
 
 
229 aa  68.9  0.00000000005  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  31.41 
 
 
226 aa  68.6  0.00000000007  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_010510  Mrad2831_6152  Crp/FNR family transcriptional regulator  33.15 
 
 
256 aa  68.2  0.00000000008  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  30.37 
 
 
226 aa  67.8  0.0000000001  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_010424  Daud_0783  CRP/FNR family transcriptional regulator  29.17 
 
 
217 aa  68.2  0.0000000001  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  30.22 
 
 
242 aa  67.8  0.0000000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_013216  Dtox_1944  transcriptional regulator, Crp/Fnr family  27.17 
 
 
227 aa  66.2  0.0000000004  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_0880  transcriptional regulator, Crp/Fnr family  28.81 
 
 
219 aa  65.9  0.0000000005  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.812688  n/a   
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  26.63 
 
 
236 aa  65.9  0.0000000005  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  27.42 
 
 
236 aa  65.5  0.0000000006  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_009253  Dred_1262  CRP/FNR family transcriptional regulator  26.06 
 
 
222 aa  65.5  0.0000000006  Desulfotomaculum reducens MI-1  Bacteria  normal  0.247212  n/a   
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  29.59 
 
 
225 aa  65.5  0.0000000006  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  25.24 
 
 
236 aa  65.1  0.0000000007  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  29.08 
 
 
225 aa  65.5  0.0000000007  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  29.08 
 
 
225 aa  65.1  0.0000000008  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  25.24 
 
 
236 aa  65.1  0.0000000008  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_011666  Msil_1523  transcriptional regulator, Crp/Fnr family  28.28 
 
 
231 aa  64.7  0.000000001  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  27.06 
 
 
240 aa  64.3  0.000000001  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  30.11 
 
 
228 aa  64.3  0.000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6822  Crp/FNR family transcriptional regulator  27.14 
 
 
239 aa  63.9  0.000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  29.48 
 
 
224 aa  62.8  0.000000004  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_010815  Glov_3725  transcriptional regulator, Crp/Fnr family  25.54 
 
 
237 aa  62.8  0.000000004  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.0054318  normal  0.342144 
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  25.63 
 
 
247 aa  62.4  0.000000005  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  27.59 
 
 
229 aa  62.4  0.000000005  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  27.19 
 
 
236 aa  62  0.000000007  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_013721  HMPREF0424_0303  cyclic nucleotide-binding domain protein  26.2 
 
 
236 aa  61.6  0.000000008  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.232206 
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  28.21 
 
 
226 aa  61.6  0.000000008  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  29.67 
 
 
225 aa  61.6  0.000000008  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  24.43 
 
 
225 aa  61.2  0.00000001  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  27.17 
 
 
225 aa  61.2  0.00000001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  28.28 
 
 
220 aa  60.5  0.00000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  30.77 
 
 
236 aa  60.1  0.00000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  30.81 
 
 
226 aa  60.1  0.00000003  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_008148  Rxyl_2076  Crp/FNR family transcriptional regulator  26.9 
 
 
234 aa  60.1  0.00000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.398696  n/a   
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  29.32 
 
 
228 aa  59.7  0.00000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  28.35 
 
 
226 aa  59.3  0.00000004  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  24.18 
 
 
226 aa  59.3  0.00000005  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  27.75 
 
 
248 aa  58.9  0.00000005  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  28.8 
 
 
228 aa  58.9  0.00000006  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_0106  Crp/FNR family transcriptional regulator  25.88 
 
 
254 aa  58.9  0.00000006  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8903  transcriptional regulator, Crp/Fnr family  31.32 
 
 
224 aa  58.5  0.00000007  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  27.59 
 
 
352 aa  58.5  0.00000007  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  25.12 
 
 
231 aa  58.5  0.00000008  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_011757  Mchl_4199  cyclic nucleotide-binding protein  29.38 
 
 
260 aa  58.5  0.00000008  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_1491  Crp/FNR family transcriptional regulator  27.69 
 
 
224 aa  58.5  0.00000008  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000413534  n/a   
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  28.16 
 
 
228 aa  58.2  0.00000009  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_011992  Dtpsy_1943  transcriptional regulator, Crp/Fnr family  29.57 
 
 
239 aa  57.8  0.0000001  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_22000  transcriptional regulator, Crp/Fnr family  27.13 
 
 
235 aa  56.6  0.0000002  Azotobacter vinelandii DJ  Bacteria  normal  0.457493  n/a   
 
 
-
 
NC_008554  Sfum_2941  Crp/FNR family transcriptional regulator  28.82 
 
 
235 aa  57  0.0000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_1482  CRP/FNR family transcriptional regulator  27.01 
 
 
235 aa  57.4  0.0000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000000238682  n/a   
 
 
-
 
NC_014212  Mesil_2074  transcriptional regulator, Crp/Fnr family  29.41 
 
 
225 aa  57  0.0000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.971908 
 
 
-
 
NC_010816  BLD_0979  cAMP-binding protein  26.84 
 
 
239 aa  56.6  0.0000003  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3158  transcriptional regulator, Crp/Fnr family  22.75 
 
 
223 aa  56.2  0.0000004  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  25.98 
 
 
229 aa  55.8  0.0000004  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_012791  Vapar_2630  transcriptional regulator, Crp/Fnr family  30.65 
 
 
239 aa  55.8  0.0000005  Variovorax paradoxus S110  Bacteria  decreased coverage  0.00642792  n/a   
 
 
-
 
NC_008782  Ajs_1779  Crp/FNR family transcriptional regulator  29.03 
 
 
239 aa  55.8  0.0000005  Acidovorax sp. JS42  Bacteria  normal  0.72161  normal 
 
 
-
 
NC_009719  Plav_1010  CRP/FNR family transcriptional regulator  26.73 
 
 
257 aa  55.5  0.0000006  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  25.24 
 
 
230 aa  55.5  0.0000007  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_008254  Meso_2246  Crp/FNR family transcriptional regulator  26.49 
 
 
233 aa  55.1  0.0000008  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_3348  cyclic nucleotide-binding  26.39 
 
 
254 aa  55.1  0.0000008  Methylobacterium extorquens PA1  Bacteria  normal  0.181039  normal 
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  26.98 
 
 
224 aa  55.1  0.0000008  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  28.16 
 
 
254 aa  54.7  0.000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_010511  M446_0723  Crp/FNR family transcriptional regulator  30.36 
 
 
228 aa  54.7  0.000001  Methylobacterium sp. 4-46  Bacteria  normal  0.362046  normal  0.190371 
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  27.32 
 
 
228 aa  54.3  0.000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  26.18 
 
 
229 aa  54.3  0.000001  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3673  transcriptional regulator, Crp/Fnr family  26.39 
 
 
254 aa  54.7  0.000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.43296  normal 
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  25.27 
 
 
241 aa  53.9  0.000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_2706  Crp/FNR family transcriptional regulator  27.55 
 
 
228 aa  53.5  0.000002  Sphingomonas wittichii RW1  Bacteria  normal  0.154877  normal 
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  27.47 
 
 
229 aa  53.9  0.000002  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
NC_013093  Amir_0253  transcriptional regulator, Crp/Fnr family  27.51 
 
 
224 aa  53.5  0.000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2833  transcriptional regulator, Crp/Fnr family  28.35 
 
 
213 aa  53.1  0.000003  Meiothermus silvanus DSM 9946  Bacteria  normal  0.0320601  normal  0.661336 
 
 
-
 
NC_008242  Meso_4277  Crp/FNR family transcriptional regulator  24.48 
 
 
234 aa  53.1  0.000003  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  27.64 
 
 
227 aa  53.1  0.000003  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008528  OEOE_0355  Crp-like transcriptional regulator  25.77 
 
 
221 aa  53.1  0.000003  Oenococcus oeni PSU-1  Bacteria  normal  0.128458  n/a   
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  25.84 
 
 
227 aa  52.8  0.000004  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>