More than 300 homologs were found in PanDaTox collection
for query gene RPC_3189 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007925  RPC_3189  Crp/FNR family transcriptional regulator  100 
 
 
219 aa  434  1e-121  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.84617 
 
 
-
 
NC_010581  Bind_2046  Crp/FNR family transcriptional regulator  61.24 
 
 
219 aa  254  7e-67  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_0800  transcriptional regulator, Crp/Fnr family  58.72 
 
 
224 aa  243  1.9999999999999999e-63  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0302672 
 
 
-
 
NC_011365  Gdia_2894  putative transcriptional regulator, Crp/Fnr family  48.33 
 
 
224 aa  183  2.0000000000000003e-45  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.0602886  normal  0.0128159 
 
 
-
 
NC_012560  Avin_47010  Carbon monoxide oxidation transcription regulator, Crp/Fnr family: CooA  41.23 
 
 
220 aa  144  9e-34  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1089  Crp/FNR family transcriptional regulator  40.3 
 
 
218 aa  142  3e-33  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.3876 
 
 
-
 
NC_007643  Rru_A1431  Crp/FNR family transcriptional regulator  34.63 
 
 
222 aa  132  3e-30  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0066  transcriptional regulator, Crp/Fnr family  36.81 
 
 
220 aa  126  3e-28  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4494  Crp/FNR family transcriptional regulator  31.1 
 
 
232 aa  123  2e-27  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.164578 
 
 
-
 
NC_007519  Dde_3027  Crp/FNR family transcriptional regulator  32.98 
 
 
216 aa  121  7e-27  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3790  transcriptional regulator, Crp/Fnr family  31.92 
 
 
226 aa  121  9e-27  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.000000171716  n/a   
 
 
-
 
NC_008751  Dvul_1134  CRP/FNR family transcriptional regulator  36.31 
 
 
223 aa  118  6e-26  Desulfovibrio vulgaris DP4  Bacteria  normal  0.972162  normal  0.0613651 
 
 
-
 
NC_013173  Dbac_0932  transcriptional regulator, Crp/Fnr family  30.1 
 
 
226 aa  113  3e-24  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.366643  n/a   
 
 
-
 
NC_013223  Dret_1233  transcriptional regulator, Crp/Fnr family  30.81 
 
 
225 aa  112  4.0000000000000004e-24  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0234193  normal  0.501568 
 
 
-
 
NC_011883  Ddes_0383  putative transcriptional regulator, Crp/Fnr family  32.42 
 
 
225 aa  110  2.0000000000000002e-23  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.164826  n/a   
 
 
-
 
NC_009429  Rsph17025_3237  hypothetical protein  36.08 
 
 
261 aa  105  7e-22  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_2234  transcriptional regulator, Crp/Fnr family  35.29 
 
 
280 aa  90.1  2e-17  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  33.17 
 
 
225 aa  74.7  0.000000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  31.6 
 
 
228 aa  73.6  0.000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  32.77 
 
 
225 aa  73.6  0.000000000002  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_013411  GYMC61_1592  transcriptional regulator, Crp/Fnr family  27.84 
 
 
228 aa  72.8  0.000000000004  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_014212  Mesil_2074  transcriptional regulator, Crp/Fnr family  32.96 
 
 
225 aa  72.4  0.000000000005  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.971908 
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  30.43 
 
 
242 aa  72  0.000000000007  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  31.18 
 
 
225 aa  72  0.000000000007  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  30.29 
 
 
224 aa  71.6  0.000000000008  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  30.26 
 
 
226 aa  71.6  0.000000000009  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  29.09 
 
 
231 aa  71.6  0.000000000009  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  31.28 
 
 
225 aa  71.2  0.00000000001  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  31.18 
 
 
225 aa  70.9  0.00000000002  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  31.28 
 
 
226 aa  68.9  0.00000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  25.26 
 
 
236 aa  68.2  0.00000000008  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  25.81 
 
 
236 aa  67.8  0.0000000001  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  22.75 
 
 
225 aa  67.4  0.0000000002  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  29.59 
 
 
226 aa  67  0.0000000002  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_011830  Dhaf_0880  transcriptional regulator, Crp/Fnr family  28.21 
 
 
219 aa  66.2  0.0000000004  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.812688  n/a   
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  24.49 
 
 
232 aa  66.2  0.0000000004  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  31.69 
 
 
228 aa  66.2  0.0000000004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  32.09 
 
 
228 aa  65.9  0.0000000005  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2076  Crp/FNR family transcriptional regulator  28.21 
 
 
234 aa  65.9  0.0000000005  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.398696  n/a   
 
 
-
 
NC_013946  Mrub_2129  Crp/Fnr family transcriptional regulator  28.98 
 
 
225 aa  65.9  0.0000000005  Meiothermus ruber DSM 1279  Bacteria  normal  0.185639  normal  0.344505 
 
 
-
 
NC_009253  Dred_1262  CRP/FNR family transcriptional regulator  25.13 
 
 
222 aa  65.5  0.0000000006  Desulfotomaculum reducens MI-1  Bacteria  normal  0.247212  n/a   
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  30.17 
 
 
236 aa  65.1  0.0000000007  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  25.13 
 
 
229 aa  65.5  0.0000000007  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  27.46 
 
 
219 aa  65.1  0.0000000007  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  25.7 
 
 
236 aa  65.5  0.0000000007  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  26.2 
 
 
225 aa  64.3  0.000000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_013216  Dtox_1944  transcriptional regulator, Crp/Fnr family  27.37 
 
 
227 aa  64.3  0.000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  26.06 
 
 
236 aa  64.7  0.000000001  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_008528  OEOE_0355  Crp-like transcriptional regulator  24.64 
 
 
221 aa  64.3  0.000000001  Oenococcus oeni PSU-1  Bacteria  normal  0.128458  n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  32.41 
 
 
231 aa  63.9  0.000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  27.47 
 
 
251 aa  63.5  0.000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  29.41 
 
 
220 aa  63.5  0.000000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  28.95 
 
 
225 aa  63.9  0.000000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_0303  cyclic nucleotide-binding domain protein  23.04 
 
 
236 aa  63.9  0.000000002  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.232206 
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  31.32 
 
 
229 aa  63.2  0.000000003  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_012791  Vapar_2630  transcriptional regulator, Crp/Fnr family  30.27 
 
 
239 aa  62  0.000000006  Variovorax paradoxus S110  Bacteria  decreased coverage  0.00642792  n/a   
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  25 
 
 
225 aa  62  0.000000007  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  27.96 
 
 
226 aa  62  0.000000007  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_013131  Caci_8903  transcriptional regulator, Crp/Fnr family  30.6 
 
 
224 aa  61.6  0.000000008  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_0629  transcriptional regulator, Crp/Fnr family  29.19 
 
 
230 aa  61.6  0.000000009  Geobacter lovleyi SZ  Bacteria  decreased coverage  0.0000285446  n/a   
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  24.4 
 
 
247 aa  61.2  0.00000001  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  29.41 
 
 
225 aa  61.2  0.00000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  24.04 
 
 
227 aa  61.2  0.00000001  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  28.11 
 
 
225 aa  60.8  0.00000001  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_009654  Mmwyl1_2233  CRP/FNR family transcriptional regulator  26.54 
 
 
253 aa  60.1  0.00000002  Marinomonas sp. MWYL1  Bacteria  normal  0.0375344  normal  0.791743 
 
 
-
 
NC_009565  TBFG_13707  Cpr/FNR family transcriptional regulator  31.55 
 
 
224 aa  59.7  0.00000003  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0333343 
 
 
-
 
NC_010510  Mrad2831_6152  Crp/FNR family transcriptional regulator  27.06 
 
 
256 aa  60.1  0.00000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  27.66 
 
 
228 aa  59.7  0.00000003  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_011992  Dtpsy_1943  transcriptional regulator, Crp/Fnr family  34.97 
 
 
239 aa  60.1  0.00000003  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3158  transcriptional regulator, Crp/Fnr family  23.28 
 
 
223 aa  59.3  0.00000004  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  29.25 
 
 
224 aa  59.7  0.00000004  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_3367  Crp/FNR family transcriptional regulator  26.52 
 
 
230 aa  59.3  0.00000005  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1798  transcriptional regulator, Crp/Fnr family  27.75 
 
 
224 aa  58.9  0.00000005  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.112724  normal  0.701218 
 
 
-
 
NC_009338  Mflv_4388  CRP/FNR family transcriptional regulator  31.53 
 
 
225 aa  59.3  0.00000005  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_5435  CRP/FNR family transcriptional regulator  31.07 
 
 
224 aa  58.9  0.00000005  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.397858 
 
 
-
 
NC_013159  Svir_36130  cAMP-binding protein  31.11 
 
 
224 aa  58.9  0.00000006  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.758224 
 
 
-
 
NC_008781  Pnap_1913  CRP/FNR family transcriptional regulator  38.4 
 
 
241 aa  58.9  0.00000006  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.205993  normal  0.953786 
 
 
-
 
NC_005945  BAS1984  Crp/FNR family transcriptional regulator  25.84 
 
 
230 aa  58.5  0.00000007  Bacillus anthracis str. Sterne  Bacteria  normal  0.513682  n/a   
 
 
-
 
NC_005957  BT9727_1958  Crp/FNR family transcriptional regulator  25.84 
 
 
230 aa  58.5  0.00000007  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0304498  n/a   
 
 
-
 
NC_006274  BCZK1936  Crp/FNR family transcriptional regulator  25.84 
 
 
230 aa  58.5  0.00000007  Bacillus cereus E33L  Bacteria  normal  0.308171  n/a   
 
 
-
 
NC_007530  GBAA_2132  Crp/FNR family transcriptional regulator  25.84 
 
 
226 aa  58.5  0.00000007  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_2928  transcriptional regulator, Crp/Fnr family  27.12 
 
 
232 aa  58.5  0.00000007  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.39759 
 
 
-
 
NC_011773  BCAH820_2165  transcriptional regulator, Crp/Fnr family  25.84 
 
 
230 aa  58.5  0.00000007  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011666  Msil_1523  transcriptional regulator, Crp/Fnr family  27.22 
 
 
231 aa  58.2  0.0000001  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_013093  Amir_0253  transcriptional regulator, Crp/Fnr family  30 
 
 
224 aa  58.2  0.0000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_5205  Crp/FNR family transcriptional regulator  30.58 
 
 
224 aa  57.8  0.0000001  Mycobacterium sp. JLS  Bacteria  normal  0.703662  hitchhiker  0.000819508 
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  25.52 
 
 
352 aa  57.8  0.0000001  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_008025  Dgeo_0106  Crp/FNR family transcriptional regulator  26.44 
 
 
254 aa  57.8  0.0000001  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_4818  Crp/FNR family transcriptional regulator  30.58 
 
 
224 aa  57.8  0.0000001  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4904  Crp/FNR family transcriptional regulator  30.58 
 
 
224 aa  57.8  0.0000001  Mycobacterium sp. KMS  Bacteria  normal  normal  0.385516 
 
 
-
 
NC_008782  Ajs_1779  Crp/FNR family transcriptional regulator  34.27 
 
 
239 aa  57.8  0.0000001  Acidovorax sp. JS42  Bacteria  normal  0.72161  normal 
 
 
-
 
NC_007908  Rfer_3326  Crp/FNR family transcriptional regulator  35.2 
 
 
239 aa  57  0.0000002  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_4199  cyclic nucleotide-binding protein  26.9 
 
 
260 aa  57  0.0000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_008496  LEUM_A06  Crp-like transcriptional regulator  23.24 
 
 
230 aa  57  0.0000002  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0723  Crp/FNR family transcriptional regulator  29.76 
 
 
228 aa  57  0.0000002  Methylobacterium sp. 4-46  Bacteria  normal  0.362046  normal  0.190371 
 
 
-
 
NC_009674  Bcer98_3398  CRP/FNR family transcriptional regulator  23.44 
 
 
230 aa  57  0.0000002  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3114  CRP/FNR family transcriptional regulator  26.6 
 
 
232 aa  56.6  0.0000003  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1975  Crp/FNR family transcriptional regulator  25.28 
 
 
230 aa  56.2  0.0000003  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  30.11 
 
 
228 aa  56.2  0.0000003  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_009338  Mflv_1371  CRP/FNR family transcriptional regulator  30.58 
 
 
224 aa  56.2  0.0000004  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0955358 
 
 
-
 
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