More than 300 homologs were found in PanDaTox collection
for query gene Msil_0800 on replicon NC_011666
Organism: Methylocella silvestris BL2



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011666  Msil_0800  transcriptional regulator, Crp/Fnr family  100 
 
 
224 aa  438  9.999999999999999e-123  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0302672 
 
 
-
 
NC_007925  RPC_3189  Crp/FNR family transcriptional regulator  58.72 
 
 
219 aa  243  1.9999999999999999e-63  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.84617 
 
 
-
 
NC_010581  Bind_2046  Crp/FNR family transcriptional regulator  58.17 
 
 
219 aa  236  2e-61  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_2894  putative transcriptional regulator, Crp/Fnr family  47.87 
 
 
224 aa  183  2.0000000000000003e-45  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.0602886  normal  0.0128159 
 
 
-
 
NC_007643  Rru_A1431  Crp/FNR family transcriptional regulator  38.24 
 
 
222 aa  144  2e-33  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4494  Crp/FNR family transcriptional regulator  36.54 
 
 
232 aa  139  3.9999999999999997e-32  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.164578 
 
 
-
 
NC_013223  Dret_1233  transcriptional regulator, Crp/Fnr family  36.19 
 
 
225 aa  133  1.9999999999999998e-30  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0234193  normal  0.501568 
 
 
-
 
NC_007298  Daro_1089  Crp/FNR family transcriptional regulator  39.25 
 
 
218 aa  130  1.0000000000000001e-29  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.3876 
 
 
-
 
NC_011146  Gbem_0066  transcriptional regulator, Crp/Fnr family  37.19 
 
 
220 aa  130  2.0000000000000002e-29  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0932  transcriptional regulator, Crp/Fnr family  34.26 
 
 
226 aa  125  4.0000000000000003e-28  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.366643  n/a   
 
 
-
 
NC_012560  Avin_47010  Carbon monoxide oxidation transcription regulator, Crp/Fnr family: CooA  36.11 
 
 
220 aa  123  2e-27  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3027  Crp/FNR family transcriptional regulator  33 
 
 
216 aa  120  9.999999999999999e-27  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_1134  CRP/FNR family transcriptional regulator  34.78 
 
 
223 aa  112  4.0000000000000004e-24  Desulfovibrio vulgaris DP4  Bacteria  normal  0.972162  normal  0.0613651 
 
 
-
 
NC_009429  Rsph17025_3237  hypothetical protein  41.11 
 
 
261 aa  108  8.000000000000001e-23  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_3790  transcriptional regulator, Crp/Fnr family  30 
 
 
226 aa  108  8.000000000000001e-23  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.000000171716  n/a   
 
 
-
 
NC_011883  Ddes_0383  putative transcriptional regulator, Crp/Fnr family  30.84 
 
 
225 aa  108  9.000000000000001e-23  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.164826  n/a   
 
 
-
 
NC_011769  DvMF_2234  transcriptional regulator, Crp/Fnr family  36.67 
 
 
280 aa  93.2  3e-18  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  32.34 
 
 
231 aa  86.7  2e-16  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  30.24 
 
 
247 aa  79.7  0.00000000000003  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_009715  CCV52592_1641  hypothetical protein  27.51 
 
 
215 aa  77.4  0.0000000000002  Campylobacter curvus 525.92  Bacteria  normal  0.0118775  n/a   
 
 
-
 
NC_011830  Dhaf_0880  transcriptional regulator, Crp/Fnr family  33.57 
 
 
219 aa  76.6  0.0000000000003  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.812688  n/a   
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  32.79 
 
 
228 aa  75.9  0.0000000000004  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  26.04 
 
 
225 aa  75.9  0.0000000000005  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  32.64 
 
 
226 aa  75.5  0.0000000000006  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  33.88 
 
 
226 aa  73.9  0.000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  33.94 
 
 
225 aa  73.6  0.000000000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  33.33 
 
 
228 aa  73.2  0.000000000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  33.94 
 
 
225 aa  73.2  0.000000000003  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  31.28 
 
 
225 aa  72.8  0.000000000004  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  35.91 
 
 
225 aa  72.4  0.000000000006  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  29.03 
 
 
352 aa  71.6  0.000000000009  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_009802  CCC13826_2145  hypothetical protein  25.13 
 
 
212 aa  71.2  0.00000000001  Campylobacter concisus 13826  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  31.69 
 
 
225 aa  71.2  0.00000000001  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1955  transcriptional regulator, Crp/Fnr family  29.72 
 
 
229 aa  70.9  0.00000000002  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  32.09 
 
 
225 aa  70.9  0.00000000002  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  33.33 
 
 
228 aa  69.7  0.00000000003  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_4388  CRP/FNR family transcriptional regulator  30.85 
 
 
225 aa  69.7  0.00000000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  30.18 
 
 
224 aa  69.3  0.00000000004  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1262  CRP/FNR family transcriptional regulator  26.04 
 
 
222 aa  69.3  0.00000000004  Desulfotomaculum reducens MI-1  Bacteria  normal  0.247212  n/a   
 
 
-
 
NC_014212  Mesil_2074  transcriptional regulator, Crp/Fnr family  32.58 
 
 
225 aa  68.9  0.00000000006  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.971908 
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  31.98 
 
 
225 aa  68.6  0.00000000008  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_010172  Mext_3348  cyclic nucleotide-binding  28.31 
 
 
254 aa  68.6  0.00000000009  Methylobacterium extorquens PA1  Bacteria  normal  0.181039  normal 
 
 
-
 
NC_011757  Mchl_3673  transcriptional regulator, Crp/Fnr family  28.31 
 
 
254 aa  67.8  0.0000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.43296  normal 
 
 
-
 
NC_013946  Mrub_2129  Crp/Fnr family transcriptional regulator  29.44 
 
 
225 aa  67.4  0.0000000002  Meiothermus ruber DSM 1279  Bacteria  normal  0.185639  normal  0.344505 
 
 
-
 
NC_013216  Dtox_2928  transcriptional regulator, Crp/Fnr family  26.56 
 
 
232 aa  66.6  0.0000000003  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.39759 
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  32.12 
 
 
251 aa  66.6  0.0000000003  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_010725  Mpop_4187  transcriptional regulator, Crp/Fnr family  27.98 
 
 
254 aa  66.6  0.0000000003  Methylobacterium populi BJ001  Bacteria  normal  0.338954  normal 
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  23.76 
 
 
232 aa  66.6  0.0000000003  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  31.74 
 
 
236 aa  66.2  0.0000000004  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  27.54 
 
 
231 aa  65.9  0.0000000005  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  31.67 
 
 
222 aa  65.9  0.0000000006  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  34.39 
 
 
242 aa  65.1  0.0000000007  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  30.41 
 
 
226 aa  65.1  0.0000000008  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  29.73 
 
 
225 aa  64.7  0.000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  27.49 
 
 
226 aa  64.7  0.000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  27.98 
 
 
227 aa  64.7  0.000000001  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_0303  cyclic nucleotide-binding domain protein  28.14 
 
 
236 aa  64.7  0.000000001  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.232206 
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  29.13 
 
 
229 aa  63.9  0.000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1592  transcriptional regulator, Crp/Fnr family  27.65 
 
 
228 aa  63.9  0.000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013235  Namu_0718  transcriptional regulator, Crp/Fnr family  31.79 
 
 
224 aa  63.2  0.000000003  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  24.28 
 
 
226 aa  62.8  0.000000004  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  26.41 
 
 
236 aa  62.8  0.000000004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_4286  Crp/FNR family transcriptional regulator  34.78 
 
 
241 aa  62.8  0.000000004  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3114  CRP/FNR family transcriptional regulator  28.04 
 
 
232 aa  62.8  0.000000004  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1944  transcriptional regulator, Crp/Fnr family  28.89 
 
 
227 aa  62.4  0.000000005  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  29.07 
 
 
248 aa  62.8  0.000000005  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  28.93 
 
 
228 aa  62.4  0.000000005  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_013131  Caci_8903  transcriptional regulator, Crp/Fnr family  33.53 
 
 
224 aa  62  0.000000006  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  28.72 
 
 
240 aa  62.4  0.000000006  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_009092  Shew_3233  Crp/FNR family transcriptional regulator  27.75 
 
 
256 aa  62.4  0.000000006  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_0860  Crp/FNR family transcriptional regulator  28.76 
 
 
234 aa  62  0.000000007  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.693979  n/a   
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  33.12 
 
 
220 aa  61.6  0.000000008  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  25.71 
 
 
243 aa  62  0.000000008  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_011830  Dhaf_3158  transcriptional regulator, Crp/Fnr family  24.86 
 
 
223 aa  61.6  0.000000009  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_0505  cyclic nucleotide-binding protein  29.48 
 
 
224 aa  61.6  0.000000009  Gordonia bronchialis DSM 43247  Bacteria  normal  0.287437  n/a   
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  28.09 
 
 
225 aa  61.6  0.000000009  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_4881  putative cyclic-AMP receptor-like protein  27.18 
 
 
281 aa  61.2  0.00000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.353478  normal  0.139273 
 
 
-
 
NC_008347  Mmar10_2635  cyclic nucleotide-binding protein  29.28 
 
 
228 aa  61.6  0.00000001  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  29.49 
 
 
226 aa  60.5  0.00000002  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_010424  Daud_1482  CRP/FNR family transcriptional regulator  28.12 
 
 
235 aa  60.5  0.00000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000000238682  n/a   
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  30.73 
 
 
225 aa  60.8  0.00000002  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_0783  CRP/FNR family transcriptional regulator  26.05 
 
 
217 aa  60.8  0.00000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_2081  transcriptional regulator, Crp/Fnr family  28.99 
 
 
229 aa  60.1  0.00000003  Haliangium ochraceum DSM 14365  Bacteria  normal  0.264181  normal 
 
 
-
 
NC_009565  TBFG_13707  Cpr/FNR family transcriptional regulator  28.9 
 
 
224 aa  59.7  0.00000004  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0333343 
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  28.81 
 
 
229 aa  59.7  0.00000004  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_008726  Mvan_5435  CRP/FNR family transcriptional regulator  27.75 
 
 
224 aa  59.3  0.00000004  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.397858 
 
 
-
 
NC_011992  Dtpsy_1943  transcriptional regulator, Crp/Fnr family  31.97 
 
 
239 aa  58.9  0.00000006  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  29.14 
 
 
227 aa  58.9  0.00000006  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_0292  CRP/FNR family transcriptional regulator  33.69 
 
 
224 aa  58.5  0.00000008  Roseiflexus sp. RS-1  Bacteria  normal  0.210312  normal  0.0189188 
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  28.57 
 
 
229 aa  58.5  0.00000008  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  29.47 
 
 
234 aa  58.2  0.00000009  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_009921  Franean1_0328  Crp/FNR family transcriptional regulator  33.7 
 
 
246 aa  58.2  0.0000001  Frankia sp. EAN1pec  Bacteria  normal  0.0277272  normal  0.0570772 
 
 
-
 
NC_008146  Mmcs_4818  Crp/FNR family transcriptional regulator  27.17 
 
 
224 aa  58.2  0.0000001  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  29.7 
 
 
226 aa  58.2  0.0000001  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_009077  Mjls_5205  Crp/FNR family transcriptional regulator  27.17 
 
 
224 aa  58.2  0.0000001  Mycobacterium sp. JLS  Bacteria  normal  0.703662  hitchhiker  0.000819508 
 
 
-
 
NC_014158  Tpau_3932  transcriptional regulator, Crp/Fnr family  27.91 
 
 
224 aa  57.8  0.0000001  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.571672  n/a   
 
 
-
 
NC_008705  Mkms_4904  Crp/FNR family transcriptional regulator  27.17 
 
 
224 aa  58.2  0.0000001  Mycobacterium sp. KMS  Bacteria  normal  normal  0.385516 
 
 
-
 
NC_009338  Mflv_1371  CRP/FNR family transcriptional regulator  27.75 
 
 
224 aa  58.2  0.0000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0955358 
 
 
-
 
NC_010511  M446_0723  Crp/FNR family transcriptional regulator  31.14 
 
 
228 aa  57.8  0.0000001  Methylobacterium sp. 4-46  Bacteria  normal  0.362046  normal  0.190371 
 
 
-
 
NC_010814  Glov_0629  transcriptional regulator, Crp/Fnr family  28.96 
 
 
230 aa  57  0.0000002  Geobacter lovleyi SZ  Bacteria  decreased coverage  0.0000285446  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>