More than 300 homologs were found in PanDaTox collection
for query gene Daro_3649 on replicon NC_007298
Organism: Dechloromonas aromatica RCB



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007298  Daro_3649  cyclic nucleotide-binding: regulatory protein, Crp  100 
 
 
222 aa  444  1.0000000000000001e-124  Dechloromonas aromatica RCB  Bacteria  normal  0.111908  normal 
 
 
-
 
NC_011662  Tmz1t_1459  transcriptional regulator, Crp/Fnr family  60.27 
 
 
228 aa  257  1e-67  Thauera sp. MZ1T  Bacteria  normal  0.351279  n/a   
 
 
-
 
NC_008576  Mmc1_3202  Crp/FNR family transcriptional regulator  46.8 
 
 
220 aa  182  3e-45  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000000322643  normal 
 
 
-
 
NC_007908  Rfer_0022  Crp/FNR family transcriptional regulator  48.18 
 
 
229 aa  176  2e-43  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3266  CRP/FNR family transcriptional regulator  48.51 
 
 
222 aa  172  5e-42  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_0203  Crp/FNR family transcriptional regulator  48.15 
 
 
247 aa  171  5.999999999999999e-42  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.270076 
 
 
-
 
NC_009485  BBta_3690  cyclic nucleotide-binding protein  43.66 
 
 
224 aa  171  1e-41  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.142322  normal 
 
 
-
 
NC_007643  Rru_A1245  Crp/FNR family transcriptional regulator  41.75 
 
 
216 aa  170  1e-41  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.61444  n/a   
 
 
-
 
NC_007958  RPD_1260  Crp/Fnr family transcriptional regulator  44.28 
 
 
230 aa  170  1e-41  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.611189 
 
 
-
 
NC_011901  Tgr7_1360  putative transcriptional regulator, Crp/Fnr family  44.5 
 
 
223 aa  169  3e-41  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_2521  transcriptional regulator  39.52 
 
 
225 aa  162  4.0000000000000004e-39  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.0399516 
 
 
-
 
NC_007778  RPB_1158  Crp/FNR family transcriptional regulator  45.36 
 
 
224 aa  158  5e-38  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.1478 
 
 
-
 
NC_008043  TM1040_3643  Crp/FNR family transcriptional regulator  36.15 
 
 
221 aa  150  1e-35  Ruegeria sp. TM1040  Bacteria  normal  0.621489  normal 
 
 
-
 
NC_011206  Lferr_0120  transcriptional regulator, Crp/Fnr family  41.85 
 
 
231 aa  150  2e-35  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_0119  transcriptional regulator, Crp/Fnr family  41.85 
 
 
220 aa  150  2e-35  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.701779  n/a   
 
 
-
 
NC_007925  RPC_4303  Crp/FNR family transcriptional regulator  40.8 
 
 
224 aa  149  5e-35  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.50399  normal  0.0335378 
 
 
-
 
NC_011004  Rpal_1280  transcriptional regulator, Crp/Fnr family  39.8 
 
 
223 aa  143  3e-33  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_1844  CRP/FNR family transcriptional regulator  41.04 
 
 
240 aa  142  5e-33  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.128261  normal  0.368407 
 
 
-
 
NC_011831  Cagg_2104  transcriptional regulator, Crp/Fnr family  36.7 
 
 
229 aa  140  1.9999999999999998e-32  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4775  Crp/FNR family transcriptional regulator  36.65 
 
 
224 aa  138  4.999999999999999e-32  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2052  CRP/FNR family transcriptional regulator  41.58 
 
 
213 aa  138  7e-32  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_2963  Crp/FNR family transcriptional regulator  40.38 
 
 
218 aa  134  9.999999999999999e-31  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.281309  n/a   
 
 
-
 
NC_009049  Rsph17029_1610  CRP/FNR family transcriptional regulator  40.38 
 
 
218 aa  134  9.999999999999999e-31  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.503286  normal  0.0459235 
 
 
-
 
NC_011830  Dhaf_1507  transcriptional regulator, Crp/Fnr family  33.33 
 
 
227 aa  125  5e-28  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00368382  n/a   
 
 
-
 
NC_009012  Cthe_2978  Crp/FNR family transcriptional regulator  34.09 
 
 
235 aa  121  8e-27  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_002950  PG1573  Crp family transcriptional regulator  34.46 
 
 
283 aa  120  9.999999999999999e-27  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_014230  CA2559_11833  transcriptional regulator, Crp family protein  31.25 
 
 
208 aa  120  1.9999999999999998e-26  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_0428  Crp family transcriptional regulator  27.23 
 
 
201 aa  111  1.0000000000000001e-23  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0740  Crp/FNR family transcriptional regulator  27.03 
 
 
224 aa  108  9.000000000000001e-23  Clostridium phytofermentans ISDg  Bacteria  normal  0.194826  n/a   
 
 
-
 
NC_013730  Slin_6174  transcriptional regulator, Crp/Fnr family  29.94 
 
 
212 aa  106  2e-22  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4871  CRP/FNR family transcriptional regulator  27.94 
 
 
208 aa  105  7e-22  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0245964  n/a   
 
 
-
 
NC_013732  Slin_6930  transcriptional regulator, Crp/Fnr family  28.09 
 
 
211 aa  102  4e-21  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_12618  transcriptional regulator, Crp family protein  25.64 
 
 
210 aa  102  7e-21  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_012039  Cla_0784  transcriptional regulator, Crp/Fnr family  27.71 
 
 
201 aa  89  6e-17  Campylobacter lari RM2100  Bacteria  normal  0.706158  n/a   
 
 
-
 
NC_013132  Cpin_2609  transcriptional regulator, Crp/Fnr family  29.21 
 
 
212 aa  86.7  3e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.111906 
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  27.65 
 
 
236 aa  84  0.000000000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_011831  Cagg_1798  transcriptional regulator, Crp/Fnr family  28.22 
 
 
224 aa  82.4  0.000000000000005  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.112724  normal  0.701218 
 
 
-
 
NC_007778  RPB_1465  Crp/FNR family transcriptional regulator  27.48 
 
 
236 aa  80.9  0.00000000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.342125  normal  0.439299 
 
 
-
 
NC_009049  Rsph17029_1972  CRP/FNR family transcriptional regulator  26.05 
 
 
233 aa  79.7  0.00000000000004  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0327  Crp/FNR family transcriptional regulator  26.05 
 
 
233 aa  79.7  0.00000000000004  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.539351  n/a   
 
 
-
 
NC_013526  Tter_2020  transcriptional regulator, Crp/Fnr family  28.91 
 
 
239 aa  78.6  0.00000000000007  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.0424227  n/a   
 
 
-
 
NC_009767  Rcas_3427  Crp/FNR family transcriptional regulator  29.52 
 
 
223 aa  77.8  0.0000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0598833  hitchhiker  0.00496827 
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  29.05 
 
 
227 aa  77.8  0.0000000000001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1641  cyclic nucleotide-binding  24.78 
 
 
267 aa  77  0.0000000000002  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  27.31 
 
 
234 aa  76.6  0.0000000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  27.91 
 
 
229 aa  75.5  0.0000000000005  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_0355  Crp-like transcriptional regulator  28.57 
 
 
221 aa  75.1  0.0000000000008  Oenococcus oeni PSU-1  Bacteria  normal  0.128458  n/a   
 
 
-
 
NC_008254  Meso_2246  Crp/FNR family transcriptional regulator  26.17 
 
 
233 aa  74.7  0.000000000001  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_2884  Crp/FNR family transcriptional regulator  30.94 
 
 
218 aa  73.9  0.000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.161359  n/a   
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  27.52 
 
 
240 aa  73.6  0.000000000002  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  24.76 
 
 
236 aa  73.6  0.000000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  26.79 
 
 
226 aa  73.2  0.000000000003  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  27.96 
 
 
219 aa  72.8  0.000000000004  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_008242  Meso_4277  Crp/FNR family transcriptional regulator  26.17 
 
 
234 aa  72.8  0.000000000004  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  25.26 
 
 
249 aa  72  0.000000000007  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_009668  Oant_4381  CRP/FNR family transcriptional regulator  25.58 
 
 
231 aa  71.6  0.000000000009  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0968  CRP/FNR family transcriptional regulator  26.23 
 
 
233 aa  70.9  0.00000000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  25.7 
 
 
228 aa  71.6  0.00000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  26.17 
 
 
229 aa  71.2  0.00000000001  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  25.93 
 
 
227 aa  70.1  0.00000000002  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_1297  Crp/FNR family transcriptional regulator  30.05 
 
 
222 aa  70.5  0.00000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1660  Crp/FNR family transcriptional regulator  26.82 
 
 
261 aa  69.7  0.00000000003  Nocardioides sp. JS614  Bacteria  normal  0.74426  n/a   
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  26.39 
 
 
241 aa  68.6  0.00000000008  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6822  Crp/FNR family transcriptional regulator  26.19 
 
 
239 aa  68.6  0.00000000008  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  24.88 
 
 
227 aa  68.2  0.0000000001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_009504  BOV_A0257  transcriptional regulator NnrR  24.88 
 
 
232 aa  67.8  0.0000000001  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_0755  transcriptional regulator, Crp/Fnr family  25.37 
 
 
223 aa  68.2  0.0000000001  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.125698 
 
 
-
 
NC_012791  Vapar_3129  transcriptional regulator, Crp/Fnr family  30.4 
 
 
224 aa  67.4  0.0000000002  Variovorax paradoxus S110  Bacteria  normal  0.0256895  n/a   
 
 
-
 
NC_009523  RoseRS_0292  CRP/FNR family transcriptional regulator  28.42 
 
 
224 aa  67  0.0000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.210312  normal  0.0189188 
 
 
-
 
NC_011894  Mnod_3035  transcriptional regulator, Crp/Fnr family  28.08 
 
 
224 aa  67.4  0.0000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.738115  n/a   
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  26.48 
 
 
229 aa  67.4  0.0000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_013512  Sdel_0390  cyclic nucleotide-binding protein  26.29 
 
 
218 aa  67  0.0000000002  Sulfurospirillum deleyianum DSM 6946  Bacteria  hitchhiker  0.000226333  n/a   
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  28.44 
 
 
222 aa  66.2  0.0000000004  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_1951  Crp/FNR family transcriptional regulator  26.47 
 
 
222 aa  66.2  0.0000000004  Ruegeria sp. TM1040  Bacteria  normal  0.861655  normal  0.0267012 
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  24.54 
 
 
230 aa  65.9  0.0000000005  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  23.72 
 
 
231 aa  65.5  0.0000000006  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  23.72 
 
 
231 aa  65.5  0.0000000006  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  23.61 
 
 
226 aa  65.5  0.0000000006  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_0780  Crp/FNR family transcriptional regulator  31.02 
 
 
231 aa  65.5  0.0000000006  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.390237  normal 
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  25.47 
 
 
227 aa  65.1  0.0000000007  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  26.15 
 
 
227 aa  65.1  0.0000000008  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009668  Oant_3114  CRP/FNR family transcriptional regulator  24.62 
 
 
232 aa  65.1  0.0000000009  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2153  transcriptional regulator, Crp/Fnr family  30.43 
 
 
216 aa  64.7  0.000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.0015242 
 
 
-
 
NC_012560  Avin_22000  transcriptional regulator, Crp/Fnr family  25.54 
 
 
235 aa  64.3  0.000000001  Azotobacter vinelandii DJ  Bacteria  normal  0.457493  n/a   
 
 
-
 
NC_008228  Patl_3367  Crp/FNR family transcriptional regulator  23.18 
 
 
230 aa  64.3  0.000000001  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_0303  transcriptional regulator, Crp/Fnr family  24.67 
 
 
228 aa  64.3  0.000000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  24.22 
 
 
231 aa  64.7  0.000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_011004  Rpal_0837  transcriptional regulator, Crp/Fnr family  25.94 
 
 
234 aa  63.9  0.000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_2580  Crp/FNR family transcriptional regulator  25.34 
 
 
231 aa  63.5  0.000000002  Polaromonas sp. JS666  Bacteria  normal  normal  0.117752 
 
 
-
 
NC_009484  Acry_2102  CRP/FNR family transcriptional regulator  25.47 
 
 
227 aa  63.5  0.000000003  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  25.23 
 
 
227 aa  63.5  0.000000003  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_004311  BRA0281  transcriptional regulator NnrR  23.96 
 
 
232 aa  62.8  0.000000004  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2027  transcriptional regulator, Crp/Fnr family  24.29 
 
 
226 aa  62.8  0.000000004  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_0349  transcriptional regulator, Crp/Fnr family  27.8 
 
 
222 aa  62.8  0.000000004  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.00000192919 
 
 
-
 
NC_008687  Pden_3468  CRP/FNR family transcriptional regulator  25.47 
 
 
236 aa  62.8  0.000000004  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_0252  Crp/FNR family transcriptional regulator  28.02 
 
 
218 aa  62  0.000000007  Roseiflexus castenholzii DSM 13941  Bacteria  unclonable  0.00000185636  normal  0.131428 
 
 
-
 
NC_009523  RoseRS_0595  CRP/FNR family transcriptional regulator  26.17 
 
 
228 aa  62  0.000000007  Roseiflexus sp. RS-1  Bacteria  normal  0.130469  unclonable  0.00000708114 
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  26.74 
 
 
228 aa  61.6  0.000000008  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  25.7 
 
 
229 aa  61.6  0.000000009  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_011666  Msil_1523  transcriptional regulator, Crp/Fnr family  24.77 
 
 
231 aa  61.6  0.000000009  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
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