More than 300 homologs were found in PanDaTox collection
for query gene Rpal_1280 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_1280  transcriptional regulator, Crp/Fnr family  100 
 
 
223 aa  441  1e-123  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1260  Crp/Fnr family transcriptional regulator  81.43 
 
 
230 aa  344  6e-94  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.611189 
 
 
-
 
NC_007778  RPB_1158  Crp/FNR family transcriptional regulator  83.33 
 
 
224 aa  333  1e-90  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.1478 
 
 
-
 
NC_007925  RPC_4303  Crp/FNR family transcriptional regulator  78.38 
 
 
224 aa  330  9e-90  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.50399  normal  0.0335378 
 
 
-
 
NC_009485  BBta_3690  cyclic nucleotide-binding protein  43.87 
 
 
224 aa  177  8e-44  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.142322  normal 
 
 
-
 
NC_007643  Rru_A1245  Crp/FNR family transcriptional regulator  46.45 
 
 
216 aa  176  3e-43  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.61444  n/a   
 
 
-
 
NC_011761  AFE_0119  transcriptional regulator, Crp/Fnr family  41.67 
 
 
220 aa  176  4e-43  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.701779  n/a   
 
 
-
 
NC_011206  Lferr_0120  transcriptional regulator, Crp/Fnr family  41.67 
 
 
231 aa  175  4e-43  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_008043  TM1040_3643  Crp/FNR family transcriptional regulator  40.28 
 
 
221 aa  172  2.9999999999999996e-42  Ruegeria sp. TM1040  Bacteria  normal  0.621489  normal 
 
 
-
 
NC_011901  Tgr7_1360  putative transcriptional regulator, Crp/Fnr family  42.01 
 
 
223 aa  172  3.9999999999999995e-42  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_2521  transcriptional regulator  41.87 
 
 
225 aa  171  1e-41  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.0399516 
 
 
-
 
NC_011662  Tmz1t_1459  transcriptional regulator, Crp/Fnr family  44.98 
 
 
228 aa  164  1.0000000000000001e-39  Thauera sp. MZ1T  Bacteria  normal  0.351279  n/a   
 
 
-
 
NC_009428  Rsph17025_1844  CRP/FNR family transcriptional regulator  45.54 
 
 
240 aa  163  2.0000000000000002e-39  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.128261  normal  0.368407 
 
 
-
 
NC_007298  Daro_3649  cyclic nucleotide-binding: regulatory protein, Crp  41.29 
 
 
222 aa  154  7e-37  Dechloromonas aromatica RCB  Bacteria  normal  0.111908  normal 
 
 
-
 
NC_007493  RSP_2963  Crp/FNR family transcriptional regulator  46.28 
 
 
218 aa  149  3e-35  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.281309  n/a   
 
 
-
 
NC_009049  Rsph17029_1610  CRP/FNR family transcriptional regulator  46.28 
 
 
218 aa  149  3e-35  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.503286  normal  0.0459235 
 
 
-
 
NC_008576  Mmc1_3202  Crp/FNR family transcriptional regulator  38.57 
 
 
220 aa  144  1e-33  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000000322643  normal 
 
 
-
 
NC_011831  Cagg_2104  transcriptional regulator, Crp/Fnr family  40.74 
 
 
229 aa  140  1.9999999999999998e-32  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4775  Crp/FNR family transcriptional regulator  37.38 
 
 
224 aa  139  3e-32  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2052  CRP/FNR family transcriptional regulator  41.41 
 
 
213 aa  137  1e-31  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_0203  Crp/FNR family transcriptional regulator  40.59 
 
 
247 aa  125  4.0000000000000003e-28  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.270076 
 
 
-
 
NC_007908  Rfer_0022  Crp/FNR family transcriptional regulator  35.75 
 
 
229 aa  121  9e-27  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3266  CRP/FNR family transcriptional regulator  35.15 
 
 
222 aa  119  3.9999999999999996e-26  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_0740  Crp/FNR family transcriptional regulator  30.58 
 
 
224 aa  115  7.999999999999999e-25  Clostridium phytofermentans ISDg  Bacteria  normal  0.194826  n/a   
 
 
-
 
NC_009012  Cthe_2978  Crp/FNR family transcriptional regulator  26.79 
 
 
235 aa  105  6e-22  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_11833  transcriptional regulator, Crp family protein  25.4 
 
 
208 aa  100  1e-20  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1507  transcriptional regulator, Crp/Fnr family  29.95 
 
 
227 aa  99  5e-20  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00368382  n/a   
 
 
-
 
NC_008599  CFF8240_0428  Crp family transcriptional regulator  25.74 
 
 
201 aa  96.7  3e-19  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_013732  Slin_6930  transcriptional regulator, Crp/Fnr family  27.81 
 
 
211 aa  95.9  4e-19  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_6174  transcriptional regulator, Crp/Fnr family  28.25 
 
 
212 aa  93.6  2e-18  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_002950  PG1573  Crp family transcriptional regulator  29.38 
 
 
283 aa  92  7e-18  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_009441  Fjoh_4871  CRP/FNR family transcriptional regulator  26.82 
 
 
208 aa  90.9  1e-17  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0245964  n/a   
 
 
-
 
NC_012039  Cla_0784  transcriptional regulator, Crp/Fnr family  26.98 
 
 
201 aa  88.2  1e-16  Campylobacter lari RM2100  Bacteria  normal  0.706158  n/a   
 
 
-
 
NC_014230  CA2559_12618  transcriptional regulator, Crp family protein  28.48 
 
 
210 aa  83.2  0.000000000000003  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_0355  Crp-like transcriptional regulator  28.23 
 
 
221 aa  82  0.000000000000007  Oenococcus oeni PSU-1  Bacteria  normal  0.128458  n/a   
 
 
-
 
NC_008699  Noca_1641  cyclic nucleotide-binding  26.32 
 
 
267 aa  80.9  0.00000000000001  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_2609  transcriptional regulator, Crp/Fnr family  24.87 
 
 
212 aa  79.7  0.00000000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.111906 
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  29.91 
 
 
226 aa  78.6  0.00000000000008  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  30.19 
 
 
222 aa  77  0.0000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  28.91 
 
 
226 aa  75.5  0.0000000000006  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  27.78 
 
 
224 aa  74.3  0.000000000001  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  28.02 
 
 
226 aa  73.2  0.000000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  26.13 
 
 
243 aa  72.8  0.000000000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_009952  Dshi_2528  putative transcriptional regulator  29.02 
 
 
251 aa  71.6  0.000000000009  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.244849 
 
 
-
 
NC_009767  Rcas_0252  Crp/FNR family transcriptional regulator  30.88 
 
 
218 aa  71.2  0.00000000001  Roseiflexus castenholzii DSM 13941  Bacteria  unclonable  0.00000185636  normal  0.131428 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  27.56 
 
 
225 aa  70.9  0.00000000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  28.1 
 
 
227 aa  70.5  0.00000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_4881  putative cyclic-AMP receptor-like protein  29.47 
 
 
281 aa  70.9  0.00000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.353478  normal  0.139273 
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  25.11 
 
 
241 aa  69.7  0.00000000003  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  26.67 
 
 
236 aa  69.3  0.00000000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  26.13 
 
 
228 aa  69.3  0.00000000005  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_009972  Haur_2884  Crp/FNR family transcriptional regulator  29.56 
 
 
218 aa  68.9  0.00000000006  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.161359  n/a   
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  25.89 
 
 
234 aa  67.8  0.0000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_009656  PSPA7_0351  putative transcriptional regulator  29.49 
 
 
228 aa  67.8  0.0000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_0327  Crp/FNR family transcriptional regulator  28.33 
 
 
233 aa  67.4  0.0000000002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.539351  n/a   
 
 
-
 
NC_009428  Rsph17025_0968  CRP/FNR family transcriptional regulator  28.33 
 
 
233 aa  67  0.0000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3427  Crp/FNR family transcriptional regulator  26.32 
 
 
223 aa  67  0.0000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0598833  hitchhiker  0.00496827 
 
 
-
 
NC_009049  Rsph17029_1972  CRP/FNR family transcriptional regulator  28.33 
 
 
233 aa  67.4  0.0000000002  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_4187  transcriptional regulator, Crp/Fnr family  31.55 
 
 
254 aa  67  0.0000000002  Methylobacterium populi BJ001  Bacteria  normal  0.338954  normal 
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  25.12 
 
 
230 aa  65.5  0.0000000006  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_011894  Mnod_3035  transcriptional regulator, Crp/Fnr family  29.17 
 
 
224 aa  65.5  0.0000000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.738115  n/a   
 
 
-
 
NC_009523  RoseRS_0292  CRP/FNR family transcriptional regulator  28.9 
 
 
224 aa  65.1  0.0000000009  Roseiflexus sp. RS-1  Bacteria  normal  0.210312  normal  0.0189188 
 
 
-
 
NC_010172  Mext_3348  cyclic nucleotide-binding  30.81 
 
 
254 aa  64.3  0.000000001  Methylobacterium extorquens PA1  Bacteria  normal  0.181039  normal 
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  26.15 
 
 
229 aa  64.7  0.000000001  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0723  Crp/FNR family transcriptional regulator  26.73 
 
 
228 aa  64.7  0.000000001  Methylobacterium sp. 4-46  Bacteria  normal  0.362046  normal  0.190371 
 
 
-
 
NC_007778  RPB_1465  Crp/FNR family transcriptional regulator  27.27 
 
 
236 aa  64.7  0.000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.342125  normal  0.439299 
 
 
-
 
NC_011757  Mchl_3673  transcriptional regulator, Crp/Fnr family  30.81 
 
 
254 aa  64.7  0.000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.43296  normal 
 
 
-
 
NC_011830  Dhaf_1859  transcriptional regulator, Crp/Fnr family  25.7 
 
 
220 aa  64.3  0.000000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3066  cyclic nucleotide-binding  27.1 
 
 
240 aa  63.5  0.000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_3408  transcriptional regulator, Crp/Fnr family  26.27 
 
 
243 aa  63.5  0.000000002  Ralstonia pickettii 12J  Bacteria  normal  normal  0.258046 
 
 
-
 
NC_009485  BBta_0559  Crp/FNR family transcriptional regulator  25.7 
 
 
225 aa  63.9  0.000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.338488  normal  0.42035 
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  29.06 
 
 
242 aa  63.2  0.000000003  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  25 
 
 
229 aa  63.2  0.000000003  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  26.09 
 
 
225 aa  63.5  0.000000003  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_012791  Vapar_3129  transcriptional regulator, Crp/Fnr family  28.44 
 
 
224 aa  62.8  0.000000004  Variovorax paradoxus S110  Bacteria  normal  0.0256895  n/a   
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  24.4 
 
 
249 aa  62.8  0.000000004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_010002  Daci_2132  Crp/FNR family transcriptional regulator  25.64 
 
 
231 aa  62.8  0.000000004  Delftia acidovorans SPH-1  Bacteria  decreased coverage  0.00647195  normal  0.364317 
 
 
-
 
NC_012791  Vapar_1284  transcriptional regulator, Crp/Fnr family  24.15 
 
 
224 aa  62.4  0.000000005  Variovorax paradoxus S110  Bacteria  normal  0.304913  n/a   
 
 
-
 
NC_013889  TK90_2357  transcriptional regulator, Crp/Fnr family  28.66 
 
 
212 aa  62.4  0.000000006  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_013512  Sdel_0390  cyclic nucleotide-binding protein  21.05 
 
 
218 aa  62  0.000000007  Sulfurospirillum deleyianum DSM 6946  Bacteria  hitchhiker  0.000226333  n/a   
 
 
-
 
NC_012856  Rpic12D_3062  transcriptional regulator, Crp/Fnr family  24.65 
 
 
232 aa  61.6  0.000000009  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_3550  cAMP-regulatory protein  25.84 
 
 
217 aa  61.6  0.000000009  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1798  transcriptional regulator, Crp/Fnr family  27.48 
 
 
224 aa  60.8  0.00000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.112724  normal  0.701218 
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  26.24 
 
 
240 aa  60.8  0.00000001  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_011757  Mchl_4199  cyclic nucleotide-binding protein  28.29 
 
 
260 aa  61.2  0.00000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_0780  Crp/FNR family transcriptional regulator  30.21 
 
 
231 aa  60.8  0.00000001  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.390237  normal 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  26.09 
 
 
225 aa  61.6  0.00000001  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0906  Crp/FNR family transcriptional regulator  27.32 
 
 
238 aa  60.8  0.00000002  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_5205  Crp/FNR family transcriptional regulator  25.4 
 
 
224 aa  60.5  0.00000002  Mycobacterium sp. JLS  Bacteria  normal  0.703662  hitchhiker  0.000819508 
 
 
-
 
NC_008146  Mmcs_4818  Crp/FNR family transcriptional regulator  25.4 
 
 
224 aa  60.5  0.00000002  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4904  Crp/FNR family transcriptional regulator  25.4 
 
 
224 aa  60.5  0.00000002  Mycobacterium sp. KMS  Bacteria  normal  normal  0.385516 
 
 
-
 
NC_010086  Bmul_4311  cyclic nucleotide-binding protein  26.14 
 
 
285 aa  60.1  0.00000002  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0853188  normal  0.342841 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  24.62 
 
 
224 aa  59.7  0.00000003  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_3800  Crp/FNR family transcriptional regulator  21.84 
 
 
225 aa  60.1  0.00000003  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_1371  CRP/FNR family transcriptional regulator  25.4 
 
 
224 aa  60.1  0.00000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0955358 
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  25 
 
 
227 aa  59.7  0.00000003  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008726  Mvan_5435  CRP/FNR family transcriptional regulator  25.4 
 
 
224 aa  59.7  0.00000003  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.397858 
 
 
-
 
NC_010676  Bphyt_6768  cyclic nucleotide-binding protein  24.88 
 
 
248 aa  59.7  0.00000004  Burkholderia phytofirmans PsJN  Bacteria  normal  0.1826  normal  0.270362 
 
 
-
 
NC_007908  Rfer_3326  Crp/FNR family transcriptional regulator  25.23 
 
 
239 aa  59.3  0.00000004  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_2102  CRP/FNR family transcriptional regulator  25.79 
 
 
227 aa  59.7  0.00000004  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
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