228 homologs were found in PanDaTox collection
for query gene Mrad2831_4775 on replicon NC_010505
Organism: Methylobacterium radiotolerans JCM 2831



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010505  Mrad2831_4775  Crp/FNR family transcriptional regulator  100 
 
 
224 aa  453  1.0000000000000001e-126  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_3690  cyclic nucleotide-binding protein  38.32 
 
 
224 aa  144  9e-34  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.142322  normal 
 
 
-
 
NC_011662  Tmz1t_1459  transcriptional regulator, Crp/Fnr family  39.82 
 
 
228 aa  144  1e-33  Thauera sp. MZ1T  Bacteria  normal  0.351279  n/a   
 
 
-
 
NC_007298  Daro_3649  cyclic nucleotide-binding: regulatory protein, Crp  36.65 
 
 
222 aa  138  6e-32  Dechloromonas aromatica RCB  Bacteria  normal  0.111908  normal 
 
 
-
 
NC_007958  RPD_1260  Crp/Fnr family transcriptional regulator  36.95 
 
 
230 aa  136  3.0000000000000003e-31  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.611189 
 
 
-
 
NC_011761  AFE_0119  transcriptional regulator, Crp/Fnr family  33.96 
 
 
220 aa  135  4e-31  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.701779  n/a   
 
 
-
 
NC_011206  Lferr_0120  transcriptional regulator, Crp/Fnr family  33.96 
 
 
231 aa  135  5e-31  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1360  putative transcriptional regulator, Crp/Fnr family  39.11 
 
 
223 aa  132  3e-30  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4303  Crp/FNR family transcriptional regulator  37.85 
 
 
224 aa  131  6.999999999999999e-30  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.50399  normal  0.0335378 
 
 
-
 
NC_007643  Rru_A1245  Crp/FNR family transcriptional regulator  36.89 
 
 
216 aa  130  1.0000000000000001e-29  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.61444  n/a   
 
 
-
 
NC_007778  RPB_1158  Crp/FNR family transcriptional regulator  37.44 
 
 
224 aa  127  1.0000000000000001e-28  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.1478 
 
 
-
 
NC_009952  Dshi_2521  transcriptional regulator  36.62 
 
 
225 aa  127  1.0000000000000001e-28  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.0399516 
 
 
-
 
NC_008043  TM1040_3643  Crp/FNR family transcriptional regulator  33.02 
 
 
221 aa  125  4.0000000000000003e-28  Ruegeria sp. TM1040  Bacteria  normal  0.621489  normal 
 
 
-
 
NC_008576  Mmc1_3202  Crp/FNR family transcriptional regulator  35.18 
 
 
220 aa  125  5e-28  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000000322643  normal 
 
 
-
 
NC_011004  Rpal_1280  transcriptional regulator, Crp/Fnr family  37.44 
 
 
223 aa  123  3e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_2963  Crp/FNR family transcriptional regulator  39.71 
 
 
218 aa  115  5e-25  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.281309  n/a   
 
 
-
 
NC_009049  Rsph17029_1610  CRP/FNR family transcriptional regulator  39.71 
 
 
218 aa  115  5e-25  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.503286  normal  0.0459235 
 
 
-
 
NC_011831  Cagg_2104  transcriptional regulator, Crp/Fnr family  34.83 
 
 
229 aa  112  4.0000000000000004e-24  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_1844  CRP/FNR family transcriptional regulator  34.38 
 
 
240 aa  112  5e-24  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.128261  normal  0.368407 
 
 
-
 
NC_008599  CFF8240_0428  Crp family transcriptional regulator  28.5 
 
 
201 aa  110  2.0000000000000002e-23  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0740  Crp/FNR family transcriptional regulator  29.05 
 
 
224 aa  107  1e-22  Clostridium phytofermentans ISDg  Bacteria  normal  0.194826  n/a   
 
 
-
 
NC_008740  Maqu_2052  CRP/FNR family transcriptional regulator  31.69 
 
 
213 aa  106  2e-22  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0022  Crp/FNR family transcriptional regulator  31.16 
 
 
229 aa  105  4e-22  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_0203  Crp/FNR family transcriptional regulator  33.01 
 
 
247 aa  103  3e-21  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.270076 
 
 
-
 
NC_008781  Pnap_3266  CRP/FNR family transcriptional regulator  31.02 
 
 
222 aa  100  2e-20  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1507  transcriptional regulator, Crp/Fnr family  31.02 
 
 
227 aa  97.4  1e-19  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00368382  n/a   
 
 
-
 
NC_009012  Cthe_2978  Crp/FNR family transcriptional regulator  30.43 
 
 
235 aa  95.5  6e-19  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_012039  Cla_0784  transcriptional regulator, Crp/Fnr family  25.24 
 
 
201 aa  94.7  1e-18  Campylobacter lari RM2100  Bacteria  normal  0.706158  n/a   
 
 
-
 
NC_013730  Slin_6174  transcriptional regulator, Crp/Fnr family  32.08 
 
 
212 aa  92.8  3e-18  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2609  transcriptional regulator, Crp/Fnr family  29.23 
 
 
212 aa  90.9  1e-17  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.111906 
 
 
-
 
NC_013732  Slin_6930  transcriptional regulator, Crp/Fnr family  30.82 
 
 
211 aa  89  6e-17  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4871  CRP/FNR family transcriptional regulator  26.82 
 
 
208 aa  86.7  3e-16  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0245964  n/a   
 
 
-
 
NC_002950  PG1573  Crp family transcriptional regulator  25.56 
 
 
283 aa  85.5  6e-16  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_014230  CA2559_12618  transcriptional regulator, Crp family protein  26.32 
 
 
210 aa  83.6  0.000000000000002  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  28.96 
 
 
229 aa  83.2  0.000000000000003  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_014230  CA2559_11833  transcriptional regulator, Crp family protein  25.47 
 
 
208 aa  81.3  0.00000000000001  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_2884  Crp/FNR family transcriptional regulator  32.73 
 
 
218 aa  78.6  0.00000000000008  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.161359  n/a   
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  29.57 
 
 
236 aa  78.2  0.0000000000001  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  25.23 
 
 
231 aa  75.5  0.0000000000006  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_011831  Cagg_1798  transcriptional regulator, Crp/Fnr family  30.12 
 
 
224 aa  75.5  0.0000000000006  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.112724  normal  0.701218 
 
 
-
 
NC_009767  Rcas_3427  Crp/FNR family transcriptional regulator  30.81 
 
 
223 aa  75.5  0.0000000000006  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0598833  hitchhiker  0.00496827 
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  30.29 
 
 
222 aa  73.6  0.000000000003  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  25.14 
 
 
227 aa  67.8  0.0000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_009972  Haur_1297  Crp/FNR family transcriptional regulator  30.43 
 
 
222 aa  67.4  0.0000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  27.37 
 
 
227 aa  65.9  0.0000000005  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_0292  CRP/FNR family transcriptional regulator  29.28 
 
 
224 aa  65.5  0.0000000006  Roseiflexus sp. RS-1  Bacteria  normal  0.210312  normal  0.0189188 
 
 
-
 
NC_009767  Rcas_0252  Crp/FNR family transcriptional regulator  29.05 
 
 
218 aa  65.5  0.0000000007  Roseiflexus castenholzii DSM 13941  Bacteria  unclonable  0.00000185636  normal  0.131428 
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  29.63 
 
 
241 aa  64.7  0.000000001  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_0390  cyclic nucleotide-binding protein  23.46 
 
 
218 aa  64.3  0.000000002  Sulfurospirillum deleyianum DSM 6946  Bacteria  hitchhiker  0.000226333  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  25.81 
 
 
226 aa  63.2  0.000000003  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  25.81 
 
 
248 aa  62.8  0.000000004  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_007498  Pcar_1491  Crp/FNR family transcriptional regulator  24.15 
 
 
224 aa  62.4  0.000000006  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000413534  n/a   
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  31.14 
 
 
226 aa  62  0.000000006  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  24.32 
 
 
227 aa  62  0.000000008  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  24.88 
 
 
227 aa  61.6  0.000000009  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_008025  Dgeo_0780  Crp/FNR family transcriptional regulator  29.1 
 
 
231 aa  60.8  0.00000001  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.390237  normal 
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  28.73 
 
 
229 aa  61.6  0.00000001  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_011831  Cagg_2153  transcriptional regulator, Crp/Fnr family  31.79 
 
 
216 aa  60.5  0.00000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.0015242 
 
 
-
 
NC_008044  TM1040_1951  Crp/FNR family transcriptional regulator  25.95 
 
 
222 aa  60.5  0.00000002  Ruegeria sp. TM1040  Bacteria  normal  0.861655  normal  0.0267012 
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  26.27 
 
 
249 aa  60.5  0.00000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_013730  Slin_1271  transcriptional regulator, Crp/Fnr family  27.27 
 
 
350 aa  59.7  0.00000003  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  28.04 
 
 
230 aa  60.1  0.00000003  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  23.72 
 
 
225 aa  59.7  0.00000003  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  24.89 
 
 
228 aa  60.1  0.00000003  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_013093  Amir_3957  transcriptional regulator, Crp/Fnr family  28.42 
 
 
289 aa  59.3  0.00000004  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_003912  CJE0516  putative transcriptional regulator  24.28 
 
 
198 aa  59.3  0.00000005  Campylobacter jejuni RM1221  Bacteria  normal  0.635671  n/a   
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  27.01 
 
 
229 aa  58.9  0.00000005  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008787  CJJ81176_0491  putative transcriptional regulator  24.28 
 
 
201 aa  58.9  0.00000006  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  0.0132873  n/a   
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  23.44 
 
 
219 aa  57  0.0000002  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_009656  PSPA7_0351  putative transcriptional regulator  29.35 
 
 
228 aa  57  0.0000002  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  27.7 
 
 
226 aa  57.4  0.0000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  27.23 
 
 
226 aa  56.6  0.0000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009707  JJD26997_1473  putative transcriptional regulator  25 
 
 
198 aa  56.6  0.0000003  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  0.0168255  n/a   
 
 
-
 
NC_012856  Rpic12D_3062  transcriptional regulator, Crp/Fnr family  28.57 
 
 
232 aa  56.2  0.0000004  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  25.59 
 
 
224 aa  55.8  0.0000005  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_011830  Dhaf_0880  transcriptional regulator, Crp/Fnr family  24.51 
 
 
219 aa  55.8  0.0000005  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.812688  n/a   
 
 
-
 
NC_010682  Rpic_3408  transcriptional regulator, Crp/Fnr family  28.42 
 
 
243 aa  55.8  0.0000005  Ralstonia pickettii 12J  Bacteria  normal  normal  0.258046 
 
 
-
 
NC_011831  Cagg_0349  transcriptional regulator, Crp/Fnr family  26.13 
 
 
222 aa  55.8  0.0000005  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.00000192919 
 
 
-
 
NC_008242  Meso_4277  Crp/FNR family transcriptional regulator  23.53 
 
 
234 aa  55.5  0.0000007  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  25.44 
 
 
251 aa  55.1  0.0000009  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  29.31 
 
 
234 aa  54.7  0.000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_011989  Avi_0519  Fnr-like transcriptional activator  27.54 
 
 
246 aa  54.7  0.000001  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0723  Crp/FNR family transcriptional regulator  24.76 
 
 
228 aa  54.3  0.000001  Methylobacterium sp. 4-46  Bacteria  normal  0.362046  normal  0.190371 
 
 
-
 
NC_007484  Noc_1061  Crp family transcriptional regulator  25.96 
 
 
214 aa  53.5  0.000002  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0336611  n/a   
 
 
-
 
NC_008025  Dgeo_1275  Crp/FNR family transcriptional regulator  28.72 
 
 
230 aa  53.9  0.000002  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.651323 
 
 
-
 
NC_008463  PA14_03580  putative transcriptional regulator  28.11 
 
 
228 aa  54.3  0.000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.000980911  hitchhiker  0.0000000000977836 
 
 
-
 
NC_013223  Dret_1233  transcriptional regulator, Crp/Fnr family  26.94 
 
 
225 aa  54.3  0.000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0234193  normal  0.501568 
 
 
-
 
NC_013525  Tter_0550  transcriptional regulator, Crp/Fnr family  26.54 
 
 
224 aa  53.1  0.000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008576  Mmc1_1531  Crp/FNR family transcriptional regulator  22.48 
 
 
239 aa  53.5  0.000003  Magnetococcus sp. MC-1  Bacteria  normal  0.169257  normal 
 
 
-
 
NC_008609  Ppro_2444  Crp/FNR family transcriptional regulator  22.78 
 
 
238 aa  53.1  0.000003  Pelobacter propionicus DSM 2379  Bacteria  decreased coverage  0.000577484  n/a   
 
 
-
 
NC_008699  Noca_1660  Crp/FNR family transcriptional regulator  24.32 
 
 
261 aa  53.1  0.000003  Nocardioides sp. JS614  Bacteria  normal  0.74426  n/a   
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  23.33 
 
 
240 aa  53.1  0.000004  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_011894  Mnod_3035  transcriptional regulator, Crp/Fnr family  30.48 
 
 
224 aa  52.8  0.000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.738115  n/a   
 
 
-
 
NC_013440  Hoch_2081  transcriptional regulator, Crp/Fnr family  24.28 
 
 
229 aa  52.8  0.000005  Haliangium ochraceum DSM 14365  Bacteria  normal  0.264181  normal 
 
 
-
 
NC_009668  Oant_3114  CRP/FNR family transcriptional regulator  22.28 
 
 
232 aa  52.4  0.000006  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  22.71 
 
 
236 aa  52  0.000007  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  23.32 
 
 
243 aa  51.6  0.000009  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  21.05 
 
 
231 aa  51.2  0.00001  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_008687  Pden_3468  CRP/FNR family transcriptional regulator  27.51 
 
 
236 aa  51.2  0.00001  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A1691  CRP/FNR family transcriptional regulator  24.45 
 
 
232 aa  51.2  0.00001  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00272653  normal  0.637065 
 
 
-
 
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