More than 300 homologs were found in PanDaTox collection
for query gene BBta_3690 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_3690  cyclic nucleotide-binding protein  100 
 
 
224 aa  447  1e-125  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.142322  normal 
 
 
-
 
NC_009952  Dshi_2521  transcriptional regulator  56.82 
 
 
225 aa  256  1e-67  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.0399516 
 
 
-
 
NC_008043  TM1040_3643  Crp/FNR family transcriptional regulator  51.13 
 
 
221 aa  220  9.999999999999999e-57  Ruegeria sp. TM1040  Bacteria  normal  0.621489  normal 
 
 
-
 
NC_011901  Tgr7_1360  putative transcriptional regulator, Crp/Fnr family  53.7 
 
 
223 aa  217  8.999999999999998e-56  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0120  transcriptional regulator, Crp/Fnr family  49.55 
 
 
231 aa  205  6e-52  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_0119  transcriptional regulator, Crp/Fnr family  50 
 
 
220 aa  204  8e-52  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.701779  n/a   
 
 
-
 
NC_007643  Rru_A1245  Crp/FNR family transcriptional regulator  51.4 
 
 
216 aa  195  5.000000000000001e-49  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.61444  n/a   
 
 
-
 
NC_009428  Rsph17025_1844  CRP/FNR family transcriptional regulator  45.87 
 
 
240 aa  184  1.0000000000000001e-45  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.128261  normal  0.368407 
 
 
-
 
NC_007493  RSP_2963  Crp/FNR family transcriptional regulator  48.94 
 
 
218 aa  177  2e-43  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.281309  n/a   
 
 
-
 
NC_009049  Rsph17029_1610  CRP/FNR family transcriptional regulator  48.94 
 
 
218 aa  177  2e-43  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.503286  normal  0.0459235 
 
 
-
 
NC_007958  RPD_1260  Crp/Fnr family transcriptional regulator  43.14 
 
 
230 aa  173  1.9999999999999998e-42  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.611189 
 
 
-
 
NC_007298  Daro_3649  cyclic nucleotide-binding: regulatory protein, Crp  43.66 
 
 
222 aa  171  1e-41  Dechloromonas aromatica RCB  Bacteria  normal  0.111908  normal 
 
 
-
 
NC_011662  Tmz1t_1459  transcriptional regulator, Crp/Fnr family  41.04 
 
 
228 aa  168  6e-41  Thauera sp. MZ1T  Bacteria  normal  0.351279  n/a   
 
 
-
 
NC_011004  Rpal_1280  transcriptional regulator, Crp/Fnr family  44.66 
 
 
223 aa  161  8.000000000000001e-39  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3202  Crp/FNR family transcriptional regulator  41.01 
 
 
220 aa  159  4e-38  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000000322643  normal 
 
 
-
 
NC_007778  RPB_1158  Crp/FNR family transcriptional regulator  43.84 
 
 
224 aa  159  5e-38  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.1478 
 
 
-
 
NC_007925  RPC_4303  Crp/FNR family transcriptional regulator  42.38 
 
 
224 aa  157  9e-38  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.50399  normal  0.0335378 
 
 
-
 
NC_008740  Maqu_2052  CRP/FNR family transcriptional regulator  46.59 
 
 
213 aa  151  7e-36  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_4775  Crp/FNR family transcriptional regulator  38.32 
 
 
224 aa  144  9e-34  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2104  transcriptional regulator, Crp/Fnr family  36.54 
 
 
229 aa  133  3e-30  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_0203  Crp/FNR family transcriptional regulator  38.83 
 
 
247 aa  123  3e-27  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.270076 
 
 
-
 
NC_008781  Pnap_3266  CRP/FNR family transcriptional regulator  37.25 
 
 
222 aa  121  7e-27  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0022  Crp/FNR family transcriptional regulator  34.91 
 
 
229 aa  120  1.9999999999999998e-26  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_11833  transcriptional regulator, Crp family protein  27.41 
 
 
208 aa  119  3.9999999999999996e-26  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1507  transcriptional regulator, Crp/Fnr family  34.09 
 
 
227 aa  118  7.999999999999999e-26  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00368382  n/a   
 
 
-
 
NC_013732  Slin_6930  transcriptional regulator, Crp/Fnr family  28.65 
 
 
211 aa  102  6e-21  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_6174  transcriptional regulator, Crp/Fnr family  28.65 
 
 
212 aa  101  9e-21  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_2978  Crp/FNR family transcriptional regulator  29.38 
 
 
235 aa  95.5  5e-19  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_0428  Crp family transcriptional regulator  26.88 
 
 
201 aa  95.5  5e-19  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0740  Crp/FNR family transcriptional regulator  30.59 
 
 
224 aa  95.5  6e-19  Clostridium phytofermentans ISDg  Bacteria  normal  0.194826  n/a   
 
 
-
 
NC_002950  PG1573  Crp family transcriptional regulator  30.41 
 
 
283 aa  90.5  2e-17  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_009441  Fjoh_4871  CRP/FNR family transcriptional regulator  24.26 
 
 
208 aa  90.9  2e-17  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0245964  n/a   
 
 
-
 
NC_014230  CA2559_12618  transcriptional regulator, Crp family protein  27.53 
 
 
210 aa  90.9  2e-17  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_3062  transcriptional regulator, Crp/Fnr family  28.11 
 
 
232 aa  87  2e-16  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2609  transcriptional regulator, Crp/Fnr family  27.14 
 
 
212 aa  86.3  3e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.111906 
 
 
-
 
NC_010682  Rpic_3408  transcriptional regulator, Crp/Fnr family  27.19 
 
 
243 aa  84  0.000000000000002  Ralstonia pickettii 12J  Bacteria  normal  normal  0.258046 
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  27.98 
 
 
226 aa  80.9  0.00000000000002  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  30.5 
 
 
248 aa  75.9  0.0000000000005  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_009504  BOV_A0257  transcriptional regulator NnrR  24.76 
 
 
232 aa  75.5  0.0000000000006  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  28.44 
 
 
222 aa  75.1  0.0000000000009  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  27.52 
 
 
225 aa  74.3  0.000000000001  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_012039  Cla_0784  transcriptional regulator, Crp/Fnr family  27.16 
 
 
201 aa  74.3  0.000000000001  Campylobacter lari RM2100  Bacteria  normal  0.706158  n/a   
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  30.27 
 
 
229 aa  74.3  0.000000000001  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  29.36 
 
 
226 aa  73.9  0.000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_009972  Haur_2884  Crp/FNR family transcriptional regulator  31.22 
 
 
218 aa  72.8  0.000000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.161359  n/a   
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  27.06 
 
 
225 aa  72.8  0.000000000004  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  26.61 
 
 
225 aa  72  0.000000000006  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_007484  Noc_1061  Crp family transcriptional regulator  24.74 
 
 
214 aa  72  0.000000000007  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0336611  n/a   
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  30.21 
 
 
241 aa  71.6  0.000000000009  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0550  transcriptional regulator, Crp/Fnr family  31.61 
 
 
224 aa  71.6  0.000000000009  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009428  Rsph17025_0968  CRP/FNR family transcriptional regulator  29.78 
 
 
233 aa  71.2  0.00000000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A0894  cyclic nucleotide-binding  26.57 
 
 
226 aa  70.9  0.00000000002  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  28.63 
 
 
228 aa  70.5  0.00000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  25.89 
 
 
223 aa  70.5  0.00000000002  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_004311  BRA0281  transcriptional regulator NnrR  23.81 
 
 
232 aa  70.1  0.00000000003  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  30.05 
 
 
230 aa  70.1  0.00000000003  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  24.88 
 
 
224 aa  69.7  0.00000000003  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  26.7 
 
 
231 aa  69.3  0.00000000004  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_008528  OEOE_0355  Crp-like transcriptional regulator  29.03 
 
 
221 aa  69.3  0.00000000005  Oenococcus oeni PSU-1  Bacteria  normal  0.128458  n/a   
 
 
-
 
NC_009668  Oant_3114  CRP/FNR family transcriptional regulator  24.62 
 
 
232 aa  68.9  0.00000000005  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_0327  Crp/FNR family transcriptional regulator  29.21 
 
 
233 aa  68.9  0.00000000006  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.539351  n/a   
 
 
-
 
NC_009049  Rsph17029_1972  CRP/FNR family transcriptional regulator  29.21 
 
 
233 aa  68.9  0.00000000006  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  28.44 
 
 
229 aa  68.6  0.00000000007  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  25.35 
 
 
243 aa  68.6  0.00000000008  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_009952  Dshi_2528  putative transcriptional regulator  27.84 
 
 
251 aa  67.8  0.0000000001  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.244849 
 
 
-
 
NC_008148  Rxyl_0860  Crp/FNR family transcriptional regulator  27.72 
 
 
234 aa  67.4  0.0000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.693979  n/a   
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  25.82 
 
 
228 aa  68.2  0.0000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_009972  Haur_1297  Crp/FNR family transcriptional regulator  30.11 
 
 
222 aa  67  0.0000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  26.2 
 
 
228 aa  67.4  0.0000000002  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  22.22 
 
 
225 aa  67  0.0000000002  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_36130  cAMP-binding protein  26.77 
 
 
224 aa  67.4  0.0000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.758224 
 
 
-
 
NC_013093  Amir_0253  transcriptional regulator, Crp/Fnr family  27.27 
 
 
224 aa  67  0.0000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1798  transcriptional regulator, Crp/Fnr family  23.21 
 
 
224 aa  66.6  0.0000000003  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.112724  normal  0.701218 
 
 
-
 
NC_007908  Rfer_2394  Crp/FNR family transcriptional regulator  33.53 
 
 
255 aa  66.6  0.0000000003  Rhodoferax ferrireducens T118  Bacteria  normal  0.0405792  n/a   
 
 
-
 
NC_008146  Mmcs_4818  Crp/FNR family transcriptional regulator  26.26 
 
 
224 aa  66.2  0.0000000003  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_0426  Crp/Fnr family transcriptional regulator  27.41 
 
 
202 aa  66.2  0.0000000003  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.86211 
 
 
-
 
NC_009077  Mjls_5205  Crp/FNR family transcriptional regulator  26.26 
 
 
224 aa  66.2  0.0000000003  Mycobacterium sp. JLS  Bacteria  normal  0.703662  hitchhiker  0.000819508 
 
 
-
 
NC_008705  Mkms_4904  Crp/FNR family transcriptional regulator  26.26 
 
 
224 aa  66.2  0.0000000003  Mycobacterium sp. KMS  Bacteria  normal  normal  0.385516 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  24.77 
 
 
225 aa  66.2  0.0000000004  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_2630  transcriptional regulator, Crp/Fnr family  24.51 
 
 
239 aa  65.9  0.0000000005  Variovorax paradoxus S110  Bacteria  decreased coverage  0.00642792  n/a   
 
 
-
 
NC_009511  Swit_2706  Crp/FNR family transcriptional regulator  30.32 
 
 
228 aa  65.5  0.0000000006  Sphingomonas wittichii RW1  Bacteria  normal  0.154877  normal 
 
 
-
 
NC_013441  Gbro_0505  cyclic nucleotide-binding protein  27.78 
 
 
224 aa  65.5  0.0000000006  Gordonia bronchialis DSM 43247  Bacteria  normal  0.287437  n/a   
 
 
-
 
NC_008687  Pden_3468  CRP/FNR family transcriptional regulator  26.29 
 
 
236 aa  65.5  0.0000000006  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_0755  Crp/FNR family transcriptional regulator  26 
 
 
222 aa  65.5  0.0000000007  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.2571 
 
 
-
 
NC_008726  Mvan_5435  CRP/FNR family transcriptional regulator  26.26 
 
 
224 aa  65.5  0.0000000007  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.397858 
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  25 
 
 
231 aa  65.1  0.0000000008  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  25 
 
 
231 aa  65.1  0.0000000008  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1896  cyclic nucleotide-binding protein  28.12 
 
 
218 aa  65.1  0.0000000008  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_0252  Crp/FNR family transcriptional regulator  27.65 
 
 
218 aa  64.3  0.000000001  Roseiflexus castenholzii DSM 13941  Bacteria  unclonable  0.00000185636  normal  0.131428 
 
 
-
 
NC_009565  TBFG_13707  Cpr/FNR family transcriptional regulator  25.76 
 
 
224 aa  64.7  0.000000001  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0333343 
 
 
-
 
NC_008242  Meso_4277  Crp/FNR family transcriptional regulator  25.51 
 
 
234 aa  64.3  0.000000002  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  28.07 
 
 
227 aa  63.5  0.000000002  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_03580  putative transcriptional regulator  27.36 
 
 
228 aa  64.3  0.000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.000980911  hitchhiker  0.0000000000977836 
 
 
-
 
NC_009338  Mflv_1371  CRP/FNR family transcriptional regulator  26.26 
 
 
224 aa  63.9  0.000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0955358 
 
 
-
 
NC_009668  Oant_4381  CRP/FNR family transcriptional regulator  25 
 
 
231 aa  63.5  0.000000003  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  24.89 
 
 
228 aa  63.2  0.000000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  25.78 
 
 
225 aa  62.8  0.000000004  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_010678  Rpic_4483  transcriptional regulator, Crp/Fnr family  27.62 
 
 
243 aa  62.8  0.000000004  Ralstonia pickettii 12J  Bacteria  normal  normal  0.183908 
 
 
-
 
NC_012857  Rpic12D_4617  transcriptional regulator, Crp/Fnr family  27.62 
 
 
243 aa  62.8  0.000000004  Ralstonia pickettii 12D  Bacteria  normal  0.652735  normal 
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  24.73 
 
 
236 aa  62.8  0.000000005  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
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