More than 300 homologs were found in PanDaTox collection
for query gene Lcho_0203 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010524  Lcho_0203  Crp/FNR family transcriptional regulator  100 
 
 
247 aa  485  1e-136  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.270076 
 
 
-
 
NC_007908  Rfer_0022  Crp/FNR family transcriptional regulator  57.35 
 
 
229 aa  233  2.0000000000000002e-60  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3266  CRP/FNR family transcriptional regulator  59.2 
 
 
222 aa  233  2.0000000000000002e-60  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_1459  transcriptional regulator, Crp/Fnr family  50.45 
 
 
228 aa  210  2e-53  Thauera sp. MZ1T  Bacteria  normal  0.351279  n/a   
 
 
-
 
NC_007298  Daro_3649  cyclic nucleotide-binding: regulatory protein, Crp  48.15 
 
 
222 aa  178  9e-44  Dechloromonas aromatica RCB  Bacteria  normal  0.111908  normal 
 
 
-
 
NC_008576  Mmc1_3202  Crp/FNR family transcriptional regulator  41.43 
 
 
220 aa  167  2e-40  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000000322643  normal 
 
 
-
 
NC_007643  Rru_A1245  Crp/FNR family transcriptional regulator  47.34 
 
 
216 aa  160  2e-38  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.61444  n/a   
 
 
-
 
NC_011761  AFE_0119  transcriptional regulator, Crp/Fnr family  41.15 
 
 
220 aa  153  2e-36  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.701779  n/a   
 
 
-
 
NC_011206  Lferr_0120  transcriptional regulator, Crp/Fnr family  41.15 
 
 
231 aa  153  2e-36  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1360  putative transcriptional regulator, Crp/Fnr family  43.46 
 
 
223 aa  143  3e-33  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1260  Crp/Fnr family transcriptional regulator  44.81 
 
 
230 aa  132  7.999999999999999e-30  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.611189 
 
 
-
 
NC_009485  BBta_3690  cyclic nucleotide-binding protein  38.83 
 
 
224 aa  127  1.0000000000000001e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.142322  normal 
 
 
-
 
NC_007925  RPC_4303  Crp/FNR family transcriptional regulator  41.18 
 
 
224 aa  128  1.0000000000000001e-28  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.50399  normal  0.0335378 
 
 
-
 
NC_009952  Dshi_2521  transcriptional regulator  36.36 
 
 
225 aa  128  1.0000000000000001e-28  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.0399516 
 
 
-
 
NC_007493  RSP_2963  Crp/FNR family transcriptional regulator  40.85 
 
 
218 aa  127  2.0000000000000002e-28  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.281309  n/a   
 
 
-
 
NC_009049  Rsph17029_1610  CRP/FNR family transcriptional regulator  40.85 
 
 
218 aa  127  2.0000000000000002e-28  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.503286  normal  0.0459235 
 
 
-
 
NC_009428  Rsph17025_1844  CRP/FNR family transcriptional regulator  38.94 
 
 
240 aa  126  4.0000000000000003e-28  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.128261  normal  0.368407 
 
 
-
 
NC_008043  TM1040_3643  Crp/FNR family transcriptional regulator  36.9 
 
 
221 aa  123  3e-27  Ruegeria sp. TM1040  Bacteria  normal  0.621489  normal 
 
 
-
 
NC_002950  PG1573  Crp family transcriptional regulator  34.17 
 
 
283 aa  120  9.999999999999999e-27  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_007778  RPB_1158  Crp/FNR family transcriptional regulator  43.33 
 
 
224 aa  119  3.9999999999999996e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.1478 
 
 
-
 
NC_011004  Rpal_1280  transcriptional regulator, Crp/Fnr family  41.54 
 
 
223 aa  119  3.9999999999999996e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_11833  transcriptional regulator, Crp family protein  27.84 
 
 
208 aa  116  3e-25  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2052  CRP/FNR family transcriptional regulator  39.2 
 
 
213 aa  116  3e-25  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_12618  transcriptional regulator, Crp family protein  28.95 
 
 
210 aa  116  3.9999999999999997e-25  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1507  transcriptional regulator, Crp/Fnr family  31.02 
 
 
227 aa  109  4.0000000000000004e-23  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00368382  n/a   
 
 
-
 
NC_010505  Mrad2831_4775  Crp/FNR family transcriptional regulator  33.01 
 
 
224 aa  108  6e-23  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2104  transcriptional regulator, Crp/Fnr family  34.05 
 
 
229 aa  105  5e-22  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013732  Slin_6930  transcriptional regulator, Crp/Fnr family  31.75 
 
 
211 aa  105  6e-22  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_6174  transcriptional regulator, Crp/Fnr family  28.42 
 
 
212 aa  103  4e-21  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008599  CFF8240_0428  Crp family transcriptional regulator  28.64 
 
 
201 aa  100  2e-20  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4871  CRP/FNR family transcriptional regulator  23.92 
 
 
208 aa  96.7  3e-19  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0245964  n/a   
 
 
-
 
NC_009012  Cthe_2978  Crp/FNR family transcriptional regulator  25 
 
 
235 aa  95.1  9e-19  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0740  Crp/FNR family transcriptional regulator  25.65 
 
 
224 aa  94  2e-18  Clostridium phytofermentans ISDg  Bacteria  normal  0.194826  n/a   
 
 
-
 
NC_013132  Cpin_2609  transcriptional regulator, Crp/Fnr family  26.4 
 
 
212 aa  87.4  2e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.111906 
 
 
-
 
NC_009523  RoseRS_0292  CRP/FNR family transcriptional regulator  32.32 
 
 
224 aa  80.9  0.00000000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.210312  normal  0.0189188 
 
 
-
 
NC_012039  Cla_0784  transcriptional regulator, Crp/Fnr family  24.34 
 
 
201 aa  79.3  0.00000000000005  Campylobacter lari RM2100  Bacteria  normal  0.706158  n/a   
 
 
-
 
NC_009767  Rcas_0252  Crp/FNR family transcriptional regulator  35.15 
 
 
218 aa  79.3  0.00000000000005  Roseiflexus castenholzii DSM 13941  Bacteria  unclonable  0.00000185636  normal  0.131428 
 
 
-
 
NC_008025  Dgeo_0780  Crp/FNR family transcriptional regulator  37.77 
 
 
231 aa  76.3  0.0000000000004  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.390237  normal 
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  27.23 
 
 
243 aa  74.3  0.000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  28 
 
 
229 aa  72.8  0.000000000004  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_2884  Crp/FNR family transcriptional regulator  34.48 
 
 
218 aa  71.2  0.00000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.161359  n/a   
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  30.48 
 
 
228 aa  71.2  0.00000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  27.98 
 
 
227 aa  70.5  0.00000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_013512  Sdel_0390  cyclic nucleotide-binding protein  25.96 
 
 
218 aa  69.7  0.00000000004  Sulfurospirillum deleyianum DSM 6946  Bacteria  hitchhiker  0.000226333  n/a   
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  26.53 
 
 
227 aa  69.7  0.00000000004  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_010725  Mpop_4187  transcriptional regulator, Crp/Fnr family  27.05 
 
 
254 aa  69.3  0.00000000005  Methylobacterium populi BJ001  Bacteria  normal  0.338954  normal 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  30.61 
 
 
226 aa  69.3  0.00000000006  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_011831  Cagg_1798  transcriptional regulator, Crp/Fnr family  26.96 
 
 
224 aa  68.9  0.00000000007  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.112724  normal  0.701218 
 
 
-
 
NC_011757  Mchl_3673  transcriptional regulator, Crp/Fnr family  27.14 
 
 
254 aa  68.6  0.00000000009  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.43296  normal 
 
 
-
 
NC_011004  Rpal_4520  transcriptional regulator, Crp/Fnr family  26.91 
 
 
236 aa  68.2  0.0000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_3348  cyclic nucleotide-binding  27.14 
 
 
254 aa  68.6  0.0000000001  Methylobacterium extorquens PA1  Bacteria  normal  0.181039  normal 
 
 
-
 
NC_009972  Haur_1297  Crp/FNR family transcriptional regulator  27.49 
 
 
222 aa  67.8  0.0000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  27.05 
 
 
226 aa  67.8  0.0000000002  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_009485  BBta_6822  Crp/FNR family transcriptional regulator  29.05 
 
 
239 aa  66.2  0.0000000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  28 
 
 
229 aa  66.2  0.0000000004  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  26.18 
 
 
219 aa  65.9  0.0000000005  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_008699  Noca_1641  cyclic nucleotide-binding  26.17 
 
 
267 aa  66.2  0.0000000005  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  26.89 
 
 
230 aa  65.9  0.0000000006  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  25.71 
 
 
228 aa  65.5  0.0000000007  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  25.71 
 
 
227 aa  65.1  0.0000000009  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  25.93 
 
 
234 aa  64.7  0.000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_008242  Meso_4277  Crp/FNR family transcriptional regulator  25.87 
 
 
234 aa  65.1  0.000000001  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_2528  putative transcriptional regulator  32.69 
 
 
251 aa  64.7  0.000000001  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.244849 
 
 
-
 
NC_009767  Rcas_0291  Crp/FNR family transcriptional regulator  29.35 
 
 
227 aa  64.3  0.000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.277011  normal 
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  26.92 
 
 
236 aa  64.3  0.000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3427  Crp/FNR family transcriptional regulator  29.52 
 
 
223 aa  63.5  0.000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0598833  hitchhiker  0.00496827 
 
 
-
 
NC_009504  BOV_A0257  transcriptional regulator NnrR  26.79 
 
 
232 aa  62.8  0.000000005  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0981  transcriptional regulator, Crp/Fnr family  25.51 
 
 
246 aa  62.8  0.000000005  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0154476 
 
 
-
 
NC_011831  Cagg_2153  transcriptional regulator, Crp/Fnr family  34.02 
 
 
216 aa  62.4  0.000000006  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.0015242 
 
 
-
 
NC_011761  AFE_0857  transcriptional regulator, Crp/Fnr family  25.51 
 
 
229 aa  62.4  0.000000007  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_3062  transcriptional regulator, Crp/Fnr family  28.5 
 
 
232 aa  62.4  0.000000007  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  26.13 
 
 
241 aa  62  0.000000009  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  27.27 
 
 
231 aa  61.6  0.00000001  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_3408  transcriptional regulator, Crp/Fnr family  29.08 
 
 
243 aa  61.6  0.00000001  Ralstonia pickettii 12J  Bacteria  normal  normal  0.258046 
 
 
-
 
NC_009049  Rsph17029_1972  CRP/FNR family transcriptional regulator  26.13 
 
 
233 aa  61.6  0.00000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_2129  Crp/Fnr family transcriptional regulator  29.9 
 
 
225 aa  61.6  0.00000001  Meiothermus ruber DSM 1279  Bacteria  normal  0.185639  normal  0.344505 
 
 
-
 
NC_007493  RSP_0327  Crp/FNR family transcriptional regulator  26.13 
 
 
233 aa  61.6  0.00000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.539351  n/a   
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  27.27 
 
 
231 aa  61.6  0.00000001  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_4219  Crp/FNR family transcriptional regulator  27.52 
 
 
219 aa  61.2  0.00000001  Polaromonas sp. JS666  Bacteria  normal  0.408304  normal 
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  30.21 
 
 
222 aa  60.8  0.00000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  27.72 
 
 
240 aa  60.5  0.00000002  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  26.87 
 
 
236 aa  61.2  0.00000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_010511  M446_0723  Crp/FNR family transcriptional regulator  31.25 
 
 
228 aa  60.1  0.00000003  Methylobacterium sp. 4-46  Bacteria  normal  0.362046  normal  0.190371 
 
 
-
 
NC_011831  Cagg_0349  transcriptional regulator, Crp/Fnr family  28.82 
 
 
222 aa  60.1  0.00000004  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.00000192919 
 
 
-
 
NC_011729  PCC7424_0372  transcriptional regulator, Crp/Fnr family  25.12 
 
 
225 aa  60.1  0.00000004  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013730  Slin_1271  transcriptional regulator, Crp/Fnr family  23.32 
 
 
350 aa  59.3  0.00000006  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  26.54 
 
 
227 aa  58.9  0.00000006  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007347  Reut_A0894  cyclic nucleotide-binding  28.35 
 
 
226 aa  58.9  0.00000007  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2941  Crp/FNR family transcriptional regulator  26.57 
 
 
235 aa  58.9  0.00000007  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  26.11 
 
 
224 aa  58.5  0.00000008  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  26.07 
 
 
227 aa  58.5  0.00000008  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_011666  Msil_1523  transcriptional regulator, Crp/Fnr family  26.15 
 
 
231 aa  58.9  0.00000008  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  24.35 
 
 
226 aa  58.5  0.00000009  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_010571  Oter_0906  Crp/FNR family transcriptional regulator  29.15 
 
 
238 aa  58.5  0.00000009  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_4596  transcriptional regulator, Crp/Fnr family  29.19 
 
 
230 aa  58.2  0.0000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  27.05 
 
 
225 aa  58.2  0.0000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_011894  Mnod_3035  transcriptional regulator, Crp/Fnr family  29.9 
 
 
224 aa  58.2  0.0000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.738115  n/a   
 
 
-
 
NC_013161  Cyan8802_2082  transcriptional regulator, Crp/Fnr family  24.64 
 
 
225 aa  58.2  0.0000001  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2058  transcriptional regulator, Crp/Fnr family  24.64 
 
 
225 aa  58.2  0.0000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  25.71 
 
 
229 aa  58.2  0.0000001  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
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