More than 300 homologs were found in PanDaTox collection
for query gene Pnap_3266 on replicon NC_008781
Organism: Polaromonas naphthalenivorans CJ2



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008781  Pnap_3266  CRP/FNR family transcriptional regulator  100 
 
 
222 aa  445  1.0000000000000001e-124  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0022  Crp/FNR family transcriptional regulator  81.25 
 
 
229 aa  351  5.9999999999999994e-96  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_0203  Crp/FNR family transcriptional regulator  58.69 
 
 
247 aa  233  2.0000000000000002e-60  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.270076 
 
 
-
 
NC_011662  Tmz1t_1459  transcriptional regulator, Crp/Fnr family  49.51 
 
 
228 aa  195  4.0000000000000005e-49  Thauera sp. MZ1T  Bacteria  normal  0.351279  n/a   
 
 
-
 
NC_007298  Daro_3649  cyclic nucleotide-binding: regulatory protein, Crp  47.87 
 
 
222 aa  176  3e-43  Dechloromonas aromatica RCB  Bacteria  normal  0.111908  normal 
 
 
-
 
NC_007643  Rru_A1245  Crp/FNR family transcriptional regulator  43.4 
 
 
216 aa  155  5.0000000000000005e-37  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.61444  n/a   
 
 
-
 
NC_008576  Mmc1_3202  Crp/FNR family transcriptional regulator  39.89 
 
 
220 aa  148  7e-35  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000000322643  normal 
 
 
-
 
NC_011761  AFE_0119  transcriptional regulator, Crp/Fnr family  41.27 
 
 
220 aa  148  7e-35  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.701779  n/a   
 
 
-
 
NC_011206  Lferr_0120  transcriptional regulator, Crp/Fnr family  41.27 
 
 
231 aa  148  8e-35  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1360  putative transcriptional regulator, Crp/Fnr family  39.73 
 
 
223 aa  142  3e-33  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_2521  transcriptional regulator  38.66 
 
 
225 aa  130  1.0000000000000001e-29  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.0399516 
 
 
-
 
NC_008740  Maqu_2052  CRP/FNR family transcriptional regulator  38.5 
 
 
213 aa  129  3e-29  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1260  Crp/Fnr family transcriptional regulator  37.31 
 
 
230 aa  127  2.0000000000000002e-28  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.611189 
 
 
-
 
NC_008043  TM1040_3643  Crp/FNR family transcriptional regulator  40.35 
 
 
221 aa  126  3e-28  Ruegeria sp. TM1040  Bacteria  normal  0.621489  normal 
 
 
-
 
NC_009485  BBta_3690  cyclic nucleotide-binding protein  37.26 
 
 
224 aa  125  4.0000000000000003e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.142322  normal 
 
 
-
 
NC_007925  RPC_4303  Crp/FNR family transcriptional regulator  37.14 
 
 
224 aa  122  5e-27  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.50399  normal  0.0335378 
 
 
-
 
NC_007778  RPB_1158  Crp/FNR family transcriptional regulator  38.31 
 
 
224 aa  119  3.9999999999999996e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.1478 
 
 
-
 
NC_009428  Rsph17025_1844  CRP/FNR family transcriptional regulator  34.38 
 
 
240 aa  114  2.0000000000000002e-24  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.128261  normal  0.368407 
 
 
-
 
NC_007493  RSP_2963  Crp/FNR family transcriptional regulator  35.23 
 
 
218 aa  111  8.000000000000001e-24  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.281309  n/a   
 
 
-
 
NC_009049  Rsph17029_1610  CRP/FNR family transcriptional regulator  35.23 
 
 
218 aa  111  8.000000000000001e-24  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.503286  normal  0.0459235 
 
 
-
 
NC_011831  Cagg_2104  transcriptional regulator, Crp/Fnr family  30.23 
 
 
229 aa  111  1.0000000000000001e-23  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1507  transcriptional regulator, Crp/Fnr family  34.92 
 
 
227 aa  108  5e-23  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00368382  n/a   
 
 
-
 
NC_011004  Rpal_1280  transcriptional regulator, Crp/Fnr family  35.32 
 
 
223 aa  108  9.000000000000001e-23  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_4775  Crp/FNR family transcriptional regulator  31.53 
 
 
224 aa  104  1e-21  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_002950  PG1573  Crp family transcriptional regulator  31.43 
 
 
283 aa  100  2e-20  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_014230  CA2559_11833  transcriptional regulator, Crp family protein  28.93 
 
 
208 aa  96.7  3e-19  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_0428  Crp family transcriptional regulator  30.15 
 
 
201 aa  94.4  1e-18  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0740  Crp/FNR family transcriptional regulator  25 
 
 
224 aa  92.4  4e-18  Clostridium phytofermentans ISDg  Bacteria  normal  0.194826  n/a   
 
 
-
 
NC_009441  Fjoh_4871  CRP/FNR family transcriptional regulator  27.12 
 
 
208 aa  90.1  3e-17  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0245964  n/a   
 
 
-
 
NC_014230  CA2559_12618  transcriptional regulator, Crp family protein  28.5 
 
 
210 aa  88.2  1e-16  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2978  Crp/FNR family transcriptional regulator  25.47 
 
 
235 aa  85.1  8e-16  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013732  Slin_6930  transcriptional regulator, Crp/Fnr family  29.32 
 
 
211 aa  84.7  0.000000000000001  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_6174  transcriptional regulator, Crp/Fnr family  28 
 
 
212 aa  84  0.000000000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_012039  Cla_0784  transcriptional regulator, Crp/Fnr family  28.31 
 
 
201 aa  80.1  0.00000000000002  Campylobacter lari RM2100  Bacteria  normal  0.706158  n/a   
 
 
-
 
NC_013132  Cpin_2609  transcriptional regulator, Crp/Fnr family  27.22 
 
 
212 aa  80.5  0.00000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.111906 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  25.6 
 
 
225 aa  79  0.00000000000006  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  28.27 
 
 
227 aa  77.4  0.0000000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_2884  Crp/FNR family transcriptional regulator  33.84 
 
 
218 aa  75.1  0.0000000000008  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.161359  n/a   
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  25.81 
 
 
227 aa  73.9  0.000000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  33.51 
 
 
222 aa  73.6  0.000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_3408  transcriptional regulator, Crp/Fnr family  28.32 
 
 
243 aa  72.4  0.000000000006  Ralstonia pickettii 12J  Bacteria  normal  normal  0.258046 
 
 
-
 
NC_008025  Dgeo_0780  Crp/FNR family transcriptional regulator  34.05 
 
 
231 aa  72  0.000000000007  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.390237  normal 
 
 
-
 
NC_009049  Rsph17029_1972  CRP/FNR family transcriptional regulator  29.35 
 
 
233 aa  71.6  0.00000000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0327  Crp/FNR family transcriptional regulator  29.35 
 
 
233 aa  71.6  0.00000000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.539351  n/a   
 
 
-
 
NC_013946  Mrub_2129  Crp/Fnr family transcriptional regulator  27.49 
 
 
225 aa  70.9  0.00000000001  Meiothermus ruber DSM 1279  Bacteria  normal  0.185639  normal  0.344505 
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  30.05 
 
 
228 aa  71.6  0.00000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  25.73 
 
 
229 aa  70.5  0.00000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  27.69 
 
 
227 aa  69.3  0.00000000005  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  25.41 
 
 
219 aa  68.9  0.00000000006  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_009484  Acry_2102  CRP/FNR family transcriptional regulator  28.72 
 
 
227 aa  68.6  0.00000000008  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  29.44 
 
 
226 aa  68.6  0.00000000008  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  25.81 
 
 
243 aa  67.8  0.0000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_009972  Haur_1297  Crp/FNR family transcriptional regulator  31.98 
 
 
222 aa  67.8  0.0000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_1523  transcriptional regulator, Crp/Fnr family  26.15 
 
 
231 aa  67.4  0.0000000002  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_012856  Rpic12D_3062  transcriptional regulator, Crp/Fnr family  28.71 
 
 
232 aa  67.4  0.0000000002  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1798  transcriptional regulator, Crp/Fnr family  31.16 
 
 
224 aa  67  0.0000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.112724  normal  0.701218 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  26.23 
 
 
226 aa  66.6  0.0000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  26.7 
 
 
248 aa  66.6  0.0000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_009952  Dshi_2528  putative transcriptional regulator  28.42 
 
 
251 aa  66.2  0.0000000003  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.244849 
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  29.47 
 
 
226 aa  66.2  0.0000000004  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_009428  Rsph17025_0968  CRP/FNR family transcriptional regulator  28.14 
 
 
233 aa  65.1  0.0000000008  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  25.96 
 
 
228 aa  64.3  0.000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  27.23 
 
 
230 aa  63.9  0.000000002  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_009767  Rcas_0252  Crp/FNR family transcriptional regulator  30.73 
 
 
218 aa  63.5  0.000000002  Roseiflexus castenholzii DSM 13941  Bacteria  unclonable  0.00000185636  normal  0.131428 
 
 
-
 
NC_008554  Sfum_2941  Crp/FNR family transcriptional regulator  30.05 
 
 
235 aa  63.5  0.000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  25 
 
 
224 aa  63.9  0.000000002  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  26.98 
 
 
241 aa  63.5  0.000000003  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_0390  cyclic nucleotide-binding protein  26.07 
 
 
218 aa  63.5  0.000000003  Sulfurospirillum deleyianum DSM 6946  Bacteria  hitchhiker  0.000226333  n/a   
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  23.96 
 
 
243 aa  62.8  0.000000004  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  28.43 
 
 
234 aa  62.8  0.000000004  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  29.89 
 
 
225 aa  62.8  0.000000004  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0292  CRP/FNR family transcriptional regulator  30.77 
 
 
224 aa  62.8  0.000000005  Roseiflexus sp. RS-1  Bacteria  normal  0.210312  normal  0.0189188 
 
 
-
 
NC_009767  Rcas_3427  Crp/FNR family transcriptional regulator  31.79 
 
 
223 aa  62.4  0.000000005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0598833  hitchhiker  0.00496827 
 
 
-
 
NC_007484  Noc_1061  Crp family transcriptional regulator  28.57 
 
 
214 aa  62  0.000000006  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0336611  n/a   
 
 
-
 
NC_009767  Rcas_0291  Crp/FNR family transcriptional regulator  25.34 
 
 
227 aa  62  0.000000006  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.277011  normal 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  26.4 
 
 
224 aa  62  0.000000007  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  26.85 
 
 
226 aa  61.6  0.000000008  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_008044  TM1040_1951  Crp/FNR family transcriptional regulator  26.18 
 
 
222 aa  62  0.000000008  Ruegeria sp. TM1040  Bacteria  normal  0.861655  normal  0.0267012 
 
 
-
 
NC_013131  Caci_8903  transcriptional regulator, Crp/Fnr family  30.69 
 
 
224 aa  61.6  0.000000009  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008528  OEOE_0355  Crp-like transcriptional regulator  30 
 
 
221 aa  61.6  0.000000009  Oenococcus oeni PSU-1  Bacteria  normal  0.128458  n/a   
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  27.62 
 
 
225 aa  60.1  0.00000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0723  Crp/FNR family transcriptional regulator  29.7 
 
 
228 aa  60.8  0.00000002  Methylobacterium sp. 4-46  Bacteria  normal  0.362046  normal  0.190371 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  26.4 
 
 
228 aa  60.8  0.00000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2074  transcriptional regulator, Crp/Fnr family  26.04 
 
 
225 aa  60.8  0.00000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.971908 
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  24.37 
 
 
231 aa  60.1  0.00000003  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  24.37 
 
 
231 aa  60.1  0.00000003  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  29.06 
 
 
229 aa  59.7  0.00000003  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  26 
 
 
240 aa  60.1  0.00000003  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  25.76 
 
 
226 aa  60.1  0.00000003  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_013440  Hoch_2081  transcriptional regulator, Crp/Fnr family  25 
 
 
229 aa  59.3  0.00000004  Haliangium ochraceum DSM 14365  Bacteria  normal  0.264181  normal 
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  26.92 
 
 
227 aa  59.7  0.00000004  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009668  Oant_3114  CRP/FNR family transcriptional regulator  24.75 
 
 
232 aa  59.3  0.00000004  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  26.78 
 
 
231 aa  59.3  0.00000004  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  25.37 
 
 
236 aa  59.3  0.00000004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  28.57 
 
 
226 aa  59.3  0.00000005  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_010571  Oter_0906  Crp/FNR family transcriptional regulator  29.47 
 
 
238 aa  58.9  0.00000006  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  26.91 
 
 
239 aa  58.9  0.00000006  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_011206  Lferr_0981  transcriptional regulator, Crp/Fnr family  27.32 
 
 
246 aa  58.5  0.00000007  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0154476 
 
 
-
 
NC_013510  Tcur_0407  transcriptional regulator, Crp/Fnr family  28.72 
 
 
243 aa  58.9  0.00000007  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  26.98 
 
 
227 aa  58.5  0.00000008  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>